Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0007000

Physical Location & Seq

Genomic Coordinates Forward (+)

17424283 .. 17427743

Gene Structure 3461 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G225500.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGCCAGACTTTCAGTTGGGATCTCACACATTAAAATCTCATGGAGTCAAAGTGGCTAAAGTGCACAAATATGATTGGTTAATTCTTCTGCTTCTTGCGGCGGTAGATATAACTTTGAATGTTATAGAGCCTTTTCACCGTTTTGTTGGCGAGGAAATGATGACTGATCTGAAATACCCTTGTCATAAGGACACCATACCTTTATGGGCTGTTCCAATTTACGCAGTAATCTTGCCTCTTGTCATCTTTCTCCTGTACTATTTTTGCAGAAAGGATGTTTATGATTTACACCATGCCATATTGGGTCTTTTCTATTCTGTTCTTATAACTCTTGTTATAACCGATTCAATCAAAGATGCTGTTGGTCGCCCCCGTCCAAACTTCTTCTGGCGGTGTTTCCCTGATGGAATAGGTGAATTTGATCCTGTCAGTGGCAATGCTATGTGTAATGGAGATAAGAAAGTTATCAAGGAAGGACATAAAAGCTTTCCTAGTGGGCATACTTCAGTTTCATTTGCAGGTCTTGGTTTCCTTGCATGGTATTTGTCAGGGAAAATTAAAGTGTTTGATCGTAGGGGCCATTCTGCAAAGCTCTGCATTGCATTTCTTCCGTTACTCTGCGCTGCTCTTGTGGGAATCTCTCGTGTGGATGACTACTGGCATCATTGGCAAGACGTCTTTGCTGGAGGTCTTATAGGAATTACCATAGCTTCAATTTGTTACTTGCAGTCCTTCCCTCTTCCAAACCAGCACGATGGGTGGGCACCTCATGCATATTTTTCCATGCTGGCTGCAGAGAGGAATGGTGGCCTGTCCATGTCCCCAGCCACAAGGGCTAATTCTCTTCGTATGCGGAGAACAGATATGGACAGTCCAGATTTCACTCCACAAGATACCAGTCCACCACCCCACCAATTACTGGAAGAAATGGAAACTGGGAGAAGATACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00561 ko00564 ko01110 map00561 map00564 map01110

Pfam Domains

Protein Families

PAP2

Protein Analysis

317

Amino Acids

35.62

Weight (kDa)

7.24

Isoelectric Point (pI)

41.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007000)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18220
fragaria_vesca	FvH4_5g16740 FvH4_5g16740 FvH4_5g16740 FvH4_5g16740 FvH4_5g16740 FvH4_5g16740
malus_domestica	MD06G1221300.v1.1 MD14G1230500.v1.1
prunus_persica	Prupe.5G225500_v2.0.a1 Prupe.5G225500_v2.0.a1 Prupe.5G225500_v2.0.a1
pyrus_communis	pycom14g19180
rosa_chinensis	RchiOBHm_Chr7g0179351
rosa_laevigata	RLG00000005363
rosa_multiflora	Rmu_co8515879.1_g000001 Rmu_sc0000236.1_g000048 Rmu_sc0019996.1_g000007
rosa_roxburghii	Rroxscaffold_3G00274100
rosa_rugosa	Rorug06G0423700
rosa_samantha	Rh7AG023100 Rh7BG022700 Rh7CG024000 Rh7DG023400
rosa_wichuraiana	Rw7G001860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	326, 338
AatII	GACGTC	1 cut(s)	678
Acc36I	ACCTGC	1 cut(s)	509
AccB1I	GGYRCC	1 cut(s)	763
AccB7I	CCANNNNNTGG	1 cut(s)	919
AciI	CCGC	4 cut(s)	98, 101, 391, 853
AclWI	GGATC	2 cut(s)	28, 416
AcsI	RAATTY	1 cut(s)	416
AcuI	CTGAAG	1 cut(s)	489
AcyI	GRCGYC	1 cut(s)	675
AfaI	GTAC	1 cut(s)	257
AfiI	CCNNNNNNNGG	2 cut(s)	431, 919
AgsI	TTSAA	3 cut(s)	118, 348, 714
AluBI	AGCT	3 cut(s)	486, 592, 710
AluI	AGCT	3 cut(s)	486, 592, 710
Alw21I	GWGCWC	1 cut(s)	66
Alw44I	GTGCAC	1 cut(s)	62
AlwI	GGATC	2 cut(s)	28, 416
AoxI	GGCC	2 cut(s)	577, 808
ApaLI	GTGCAC	1 cut(s)	62
ApeKI	GCWGC	2 cut(s)	623, 791
ApoI	RAATTY	1 cut(s)	416
AspLEI	GCGC	1 cut(s)	623
AspS9I	GGNCC	1 cut(s)	577
AsuHPI	GGTGA	2 cut(s)	128, 425
BaeGI	GKGCMC	2 cut(s)	66, 766
BanI	GGYRCC	1 cut(s)	763
BauI	CACGAG	1 cut(s)	642
Bbv12I	GWGCWC	1 cut(s)	66
BbvI	GCAGC	2 cut(s)	610, 778
BccI	CCATC	2 cut(s)	398, 749
BfaI	CTAG	1 cut(s)	492
BfmI	CTRYAG	1 cut(s)	792
BfuAI	ACCTGC	1 cut(s)	509
BglI	GCCNNNNNGGC	1 cut(s)	833
BisI	GCNGC	3 cut(s)	99, 624, 792
BlsI	GCNGC	3 cut(s)	100, 625, 793
BmgT120I	GGNCC	1 cut(s)	577
BmiI	GGNNCC	2 cut(s)	578, 765
BmrI	ACTGGG	1 cut(s)	945
BmsI	GCATC	2 cut(s)	346, 670
BmuI	ACTGGG	1 cut(s)	945
BpmI	CTGGAG	1 cut(s)	705
BsaHI	GRCGYC	1 cut(s)	675
BsaXI	ACNNNNNCTCC	2 cut(s)	36, 66
Bsc4I	CCNNNNNNNGG	2 cut(s)	431, 919
Bse1I	ACTGG	4 cut(s)	662, 897, 924, 940
Bse3DI	GCAATG	2 cut(s)	442, 597
BseGI	GGATG	2 cut(s)	280, 655
BseLI	CCNNNNNNNGG	2 cut(s)	431, 919
BseMI	GCAATG	2 cut(s)	442, 597
BseNI	ACTGG	4 cut(s)	662, 897, 924, 940
BseSI	GKGCMC	2 cut(s)	66, 766
BseXI	GCAGC	2 cut(s)	610, 778
BseYI	CCCAGC	1 cut(s)	823
BshFI	GGCC	2 cut(s)	579, 810
BshNI	GGYRCC	1 cut(s)	763
BsiHKAI	GWGCWC	1 cut(s)	66
BslFI	GGGAC	1 cut(s)	805
BslI	CCNNNNNNNGG	2 cut(s)	431, 919
BsmFI	GGGAC	1 cut(s)	805
BsnI	GGCC	2 cut(s)	579, 810
Bsp1286I	GDGCHC	2 cut(s)	66, 766
Bsp143I	GATC	4 cut(s)	20, 166, 421, 568
BspACI	CCGC	4 cut(s)	98, 101, 391, 853
BspANI	GGCC	2 cut(s)	579, 810
BspLI	GGNNCC	2 cut(s)	578, 765
BspMAI	CTGCAG	1 cut(s)	796
BspMI	ACCTGC	1 cut(s)	509
BspPI	GGATC	2 cut(s)	28, 416
BspT107I	GGYRCC	1 cut(s)	763
BsrDI	GCAATG	2 cut(s)	442, 597
BsrI	ACTGG	4 cut(s)	662, 897, 924, 940
BssMI	GATC	4 cut(s)	20, 166, 421, 568
BssNI	GRCGYC	1 cut(s)	675
BssSI	CACGAG	1 cut(s)	642
Bst2BI	CACGAG	1 cut(s)	642
Bst4CI	ACNGT	2 cut(s)	140, 872
Bst6I	CTCTTC	2 cut(s)	744, 849
BstACI	GRCGYC	1 cut(s)	675
BstAPI	GCANNNNNTGC	1 cut(s)	770
BstC8I	GCNNGC	1 cut(s)	789
BstF5I	GGATG	2 cut(s)	280, 655
BstHHI	GCGC	1 cut(s)	623
BstKTI	GATC	4 cut(s)	23, 169, 424, 571
BstMBI	GATC	4 cut(s)	20, 166, 421, 568
BstMWI	GCNNNNNNNGC	3 cut(s)	667, 770, 833
BstSFI	CTRYAG	1 cut(s)	792
BstSLI	GKGCMC	2 cut(s)	66, 766
BstV1I	GCAGC	2 cut(s)	610, 778
BstX2I	RGATCY	1 cut(s)	20
BstXI	CCANNNNNNTGG	1 cut(s)	755
BstYI	RGATCY	1 cut(s)	20
BsuRI	GGCC	2 cut(s)	579, 810
BtsCI	GGATG	2 cut(s)	280, 655
BtsIMutI	CAGTG	1 cut(s)	436
BveI	ACCTGC	1 cut(s)	509
Cac8I	GCNNGC	1 cut(s)	789
CfoI	GCGC	1 cut(s)	623
Cfr13I	GGNCC	1 cut(s)	577
Csp6I	GTAC	1 cut(s)	256
CviAII	CATG	6 cut(s)	41, 293, 537, 770, 784, 817
CviQI	GTAC	1 cut(s)	256
DpnI	GATC	4 cut(s)	22, 168, 423, 570
DpnII	GATC	4 cut(s)	20, 166, 421, 568
Eam1104I	CTCTTC	2 cut(s)	744, 849
EarI	CTCTTC	2 cut(s)	744, 849
Eco57I	CTGAAG	1 cut(s)	489
EcoT22I	ATGCAT	1 cut(s)	775
FaeI	CATG	6 cut(s)	44, 296, 540, 773, 787, 820
FaqI	GGGAC	1 cut(s)	805
FatI	CATG	6 cut(s)	40, 292, 536, 769, 783, 816
Fnu4HI	GCNGC	3 cut(s)	99, 624, 792
FokI	GGATG	2 cut(s)	287, 662
Fsp4HI	GCNGC	3 cut(s)	99, 624, 792
FspBI	CTAG	1 cut(s)	492
GlaI	GCGC	1 cut(s)	622
GluI	GCNGC	3 cut(s)	99, 624, 792
GsaI	CCCAGC	1 cut(s)	827
GsuI	CTGGAG	1 cut(s)	705
HaeIII	GGCC	2 cut(s)	579, 810
HhaI	GCGC	1 cut(s)	623
Hin1I	GRCGYC	1 cut(s)	675
Hin1II	CATG	6 cut(s)	44, 296, 540, 773, 787, 820
Hin6I	GCGC	1 cut(s)	621
HinP1I	GCGC	1 cut(s)	621
HindIII	AAGCTT	1 cut(s)	484
HinfI	GANTC	3 cut(s)	45, 344, 636
HphI	GGTGA	2 cut(s)	128, 425
Hpy166II	GTNNAC	2 cut(s)	64, 902
Hpy188I	TCNGA	1 cut(s)	171
Hpy188III	TCNNGA	1 cut(s)	875
Hpy8I	GTNNAC	2 cut(s)	64, 902
HpyAV	CCTTC	2 cut(s)	467, 742
HpyCH4III	ACNGT	2 cut(s)	140, 872
HpyCH4IV	ACGT	1 cut(s)	675
HpyF10VI	GCNNNNNNNGC	3 cut(s)	667, 770, 833
HpySE526I	ACGT	1 cut(s)	675
Hsp92I	GRCGYC	1 cut(s)	675
Hsp92II	CATG	6 cut(s)	44, 296, 540, 773, 787, 820
HspAI	GCGC	1 cut(s)	621
Kzo9I	GATC	4 cut(s)	20, 166, 421, 568
Lsp1109I	GCAGC	2 cut(s)	610, 778
LweI	GCATC	2 cut(s)	346, 670
MaeI	CTAG	1 cut(s)	492
MaeII	ACGT	1 cut(s)	675
MaeIII	GTNAC	2 cut(s)	612, 719
MalI	GATC	4 cut(s)	22, 168, 423, 570
MboI	GATC	4 cut(s)	20, 166, 421, 568
MboII	GAAGA	6 cut(s)	77, 376, 599, 731, 836, 935
MflI	RGATCY	1 cut(s)	20
MhlI	GDGCHC	2 cut(s)	66, 766
MluCI	AATT	8 cut(s)	81, 216, 416, 555, 699, 714, 838, 914
MlyI	GAGTC	1 cut(s)	54
MnlI	CCTC	6 cut(s)	145, 246, 680, 747, 777, 792
Mph1103I	ATGCAT	1 cut(s)	775
MseI	TTAA	3 cut(s)	32, 80, 558
MslI	CAYNNNNRTG	1 cut(s)	69
MwoI	GCNNNNNNNGC	3 cut(s)	667, 770, 833
NdeII	GATC	4 cut(s)	20, 166, 421, 568
NlaIII	CATG	6 cut(s)	44, 296, 540, 773, 787, 820
NlaIV	GGNNCC	2 cut(s)	578, 765
NsiI	ATGCAT	1 cut(s)	775
PfeI	GAWTC	2 cut(s)	344, 636
PflMI	CCANNNNNTGG	1 cut(s)	919
PkrI	GCNGC	3 cut(s)	100, 625, 793
PleI	GAGTC	1 cut(s)	53
PpsI	GAGTC	1 cut(s)	53
PsiI	TTATAA	2 cut(s)	326, 338
PspFI	CCCAGC	1 cut(s)	823
PspN4I	GGNNCC	2 cut(s)	578, 765
PspPI	GGNCC	1 cut(s)	577
PstI	CTGCAG	1 cut(s)	796
PsuI	RGATCY	1 cut(s)	20
RsaI	GTAC	1 cut(s)	257
RsaNI	GTAC	1 cut(s)	256
RseI	CAYNNNNRTG	1 cut(s)	69
SaqAI	TTAA	3 cut(s)	32, 80, 558
SatI	GCNGC	3 cut(s)	99, 624, 792
Sau3AI	GATC	4 cut(s)	20, 166, 421, 568
Sau96I	GGNCC	1 cut(s)	577
SchI	GAGTC	1 cut(s)	54
SduI	GDGCHC	2 cut(s)	66, 766
SetI	ASST	9 cut(s)	202, 415, 488, 523, 594, 678, 691, 712, 769
SfaNI	GCATC	2 cut(s)	346, 670
SfcI	CTRYAG	1 cut(s)	792
SmiMI	CAYNNNNRTG	1 cut(s)	69
Sse9I	AATT	8 cut(s)	81, 216, 416, 555, 699, 714, 838, 914
SsiI	CCGC	4 cut(s)	98, 101, 391, 853
SspMI	CTAG	1 cut(s)	492
TaaI	ACNGT	2 cut(s)	140, 872
TaiI	ACGT	1 cut(s)	678
TasI	AATT	8 cut(s)	81, 216, 416, 555, 699, 714, 838, 914
TatI	WGTACW	1 cut(s)	255
TauI	GCSGC	1 cut(s)	101
TfiI	GAWTC	2 cut(s)	344, 636
Tru1I	TTAA	3 cut(s)	32, 80, 558
Tru9I	TTAA	3 cut(s)	32, 80, 558
TscAI	CASTG	1 cut(s)	436
TseI	GCWGC	2 cut(s)	623, 791
TspDTI	ATGAA	1 cut(s)	501
TspGWI	ACGGA	1 cut(s)	600
TspRI	CASTG	1 cut(s)	436
Van91I	CCANNNNNTGG	1 cut(s)	919
VneI	GTGCAC	1 cut(s)	62
XapI	RAATTY	1 cut(s)	416
XcmI	CCANNNNNNNNNTGG	1 cut(s)	384
XspI	CTAG	1 cut(s)	492
ZraI	GACGTC	1 cut(s)	676
Zsp2I	ATGCAT	1 cut(s)	775

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.