Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000236.1

Orthogroup ID

OG0007000

Physical Location & Seq

Genomic Coordinates Reverse (-)

130036 .. 131472

Gene Structure 1437 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000236.1_g000048.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

atgccagaaattcatttgggaactcacacgttgaaatctcatggactcaaagtggcaaatgtgcacaagtatgactggatgattcttctagttcttggggcgatagatattactttgaatgtcatcgagccttttcaccggtttcttaatgaagatatgatgactgatttgaaatacccctttcagccggacactgtaccaatgtggtgtgttccgatttacgctgtattcttgccggttggtatcttttttgcgttctacttcgtcagaaaggatatttatgacttgcaccatgctatgttgggtcttgcatattcaattttgataactctggttatcaccgactcaatcaaagatgctgttggtcgcccccgtcccgacttcttctatcggtgttttcctgatggacaaggggcatatgatacgtactatggtgatgttttgtgtactggagataaggatgctataagggaaggatataaaagctttcctagtggccattcttcagtgtcatttgcaggcctcggttttcttgcgtggtacttggccgggaagatcaaagcatttgatcgtcgaggccatgctgcaaagctgtgcattgtgatttttccactactttgtgctgctctggtagcagtctcgcgggtggatgactactggcatcattgggcagacgttttcactggtagtcttataggaattgtcatagcatcagtttgttacttgcagtccttcccttttccaaaccaggaaaatgggtgggcacctcatgtatattttcgagtgatggctgcacagctgagtgatgcctcggcgacaaggcctaacaatctcaatacgcgaagaccagacgttgaagctccagttgatttcagtccaccagcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00561 ko00564 ko01110 map00561 map00564 map01110

Pfam Domains

Protein Families

PAP2

Protein Analysis

295

Amino Acids

33.21

Weight (kDa)

6.29

Isoelectric Point (pI)

37.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007000)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18220
fragaria_vesca	FvH4_5g16740 FvH4_5g16740 FvH4_5g16740 FvH4_5g16740 FvH4_5g16740 FvH4_5g16740
malus_domestica	MD06G1221300.v1.1 MD14G1230500.v1.1
prunus_persica	Prupe.5G225500_v2.0.a1 Prupe.5G225500_v2.0.a1 Prupe.5G225500_v2.0.a1
pyrus_communis	pycom14g19180
rosa_chinensis	RchiOBHm_Chr7g0179351
rosa_laevigata	RLG00000005363
rosa_multiflora	Rmu_co8515879.1_g000001 Rmu_sc0000236.1_g000048 Rmu_sc0019996.1_g000007
rosa_roxburghii	Rroxscaffold_3G00274100
rosa_rugosa	Rorug06G0423700
rosa_samantha	Rh7AG023100 Rh7BG022700 Rh7CG024000 Rh7DG023400
rosa_wichuraiana	Rw7G001860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	763
AccII	CGCG	2 cut(s)	643, 841
AciI	CCGC	1 cut(s)	643
AcoI	YGGCCR	2 cut(s)	496, 546
AcsI	RAATTY	1 cut(s)	9
AcuI	CTGAAG	1 cut(s)	489
AfaI	GTAC	4 cut(s)	198, 428, 448, 542
AflIII	ACRYGT	1 cut(s)	27
AgeI	ACCGGT	1 cut(s)	138
AgsI	TTSAA	5 cut(s)	34, 118, 172, 318, 857
AjnI	CCWGG	1 cut(s)	747
AluBI	AGCT	5 cut(s)	486, 592, 799, 860, 884
AluI	AGCT	5 cut(s)	486, 592, 799, 860, 884
Alw21I	GWGCWC	1 cut(s)	66
Alw26I	GTCTC	1 cut(s)	643
Alw44I	GTGCAC	1 cut(s)	62
AoxI	GGCC	5 cut(s)	496, 520, 546, 577, 821
ApaLI	GTGCAC	1 cut(s)	62
ApeKI	GCWGC	3 cut(s)	584, 623, 791
ApoI	RAATTY	1 cut(s)	9
AsiGI	ACCGGT	1 cut(s)	138
AsuC2I	CCSGG	1 cut(s)	550
AsuHPI	GGTGA	3 cut(s)	128, 331, 446
BaeGI	GKGCMC	2 cut(s)	66, 766
BalI	TGGCCA	1 cut(s)	498
BanI	GGYRCC	1 cut(s)	763
BbsI	GAAGAC	1 cut(s)	850
Bbv12I	GWGCWC	1 cut(s)	66
BbvI	GCAGC	3 cut(s)	571, 610, 778
BccI	CCATC	2 cut(s)	398, 781
BciT130I	CCWGG	1 cut(s)	749
BcnI	CCSGG	1 cut(s)	550
BcoDI	GTCTC	1 cut(s)	643
BfaI	CTAG	2 cut(s)	89, 492
BisI	GCNGC	3 cut(s)	585, 624, 792
BlsI	GCNGC	3 cut(s)	586, 625, 793
Bme1390I	CCNGG	2 cut(s)	550, 749
BmiI	GGNNCC	1 cut(s)	765
BmrFI	CCNGG	2 cut(s)	550, 749
BmsI	GCATC	5 cut(s)	346, 451, 670, 719, 796
BpiI	GAAGAC	1 cut(s)	850
BpmI	CTGGAG	2 cut(s)	471, 846
BpuMI	CCSGG	1 cut(s)	550
BsaAI	YACGTR	1 cut(s)	426
BsaJI	CCNNGG	2 cut(s)	523, 810
BsaWI	WCCGGW	1 cut(s)	138
Bse118I	RCCGGY	2 cut(s)	138, 235
Bse1I	ACTGG	5 cut(s)	80, 454, 662, 688, 863
BseBI	CCWGG	1 cut(s)	749
BseDI	CCNNGG	2 cut(s)	523, 810
BseGI	GGATG	3 cut(s)	84, 466, 655
BseMII	CTCAG	1 cut(s)	791
BseNI	ACTGG	5 cut(s)	80, 454, 662, 688, 863
BseSI	GKGCMC	2 cut(s)	66, 766
BseXI	GCAGC	3 cut(s)	571, 610, 778
BsgI	GTGCAG	1 cut(s)	777
Bsh1236I	CGCG	2 cut(s)	643, 841
BshFI	GGCC	5 cut(s)	498, 522, 548, 579, 823
BshNI	GGYRCC	1 cut(s)	763
BshTI	ACCGGT	1 cut(s)	138
BsiHKAI	GWGCWC	1 cut(s)	66
BsiSI	CCGG	4 cut(s)	139, 188, 236, 549
BslFI	GGGAC	1 cut(s)	360
BsmAI	GTCTC	1 cut(s)	643
BsmFI	GGGAC	1 cut(s)	360
BsnI	GGCC	5 cut(s)	498, 522, 548, 579, 823
Bsp1286I	GDGCHC	2 cut(s)	66, 766
Bsp143I	GATC	2 cut(s)	555, 568
BspACI	CCGC	1 cut(s)	643
BspANI	GGCC	5 cut(s)	498, 522, 548, 579, 823
BspCNI	CTCAG	1 cut(s)	792
BspFNI	CGCG	2 cut(s)	643, 841
BspLI	GGNNCC	1 cut(s)	765
BspT107I	GGYRCC	1 cut(s)	763
BsrFI	RCCGGY	2 cut(s)	138, 235
BsrI	ACTGG	5 cut(s)	80, 454, 662, 688, 863
BssAI	RCCGGY	2 cut(s)	138, 235
BssECI	CCNNGG	2 cut(s)	523, 810
BssMI	GATC	2 cut(s)	555, 568
Bst2UI	CCWGG	1 cut(s)	749
Bst4CI	ACNGT	1 cut(s)	196
BstBAI	YACGTR	1 cut(s)	426
BstC8I	GCNNGC	1 cut(s)	520
BstDEI	CTNAG	1 cut(s)	800
BstF5I	GGATG	3 cut(s)	84, 466, 655
BstFNI	CGCG	2 cut(s)	643, 841
BstKTI	GATC	2 cut(s)	558, 571
BstMAI	GTCTC	1 cut(s)	643
BstMBI	GATC	2 cut(s)	555, 568
BstMWI	GCNNNNNNNGC	1 cut(s)	632
BstNI	CCWGG	1 cut(s)	749
BstSCI	CCNGG	2 cut(s)	548, 747
BstSLI	GKGCMC	2 cut(s)	66, 766
BstSNI	TACGTA	1 cut(s)	426
BstUI	CGCG	2 cut(s)	643, 841
BstV1I	GCAGC	3 cut(s)	571, 610, 778
BstV2I	GAAGAC	1 cut(s)	850
BstXI	CCANNNNNNTGG	1 cut(s)	755
BsuRI	GGCC	5 cut(s)	498, 522, 548, 579, 823
BtsCI	GGATG	3 cut(s)	84, 466, 655
BtsIMutI	CAGTG	3 cut(s)	192, 513, 681
Cac8I	GCNNGC	1 cut(s)	520
Cfr10I	RCCGGY	2 cut(s)	138, 235
Csp6I	GTAC	4 cut(s)	197, 427, 447, 541
CspAI	ACCGGT	1 cut(s)	138
CviAII	CATG	4 cut(s)	41, 293, 581, 770
CviQI	GTAC	4 cut(s)	197, 427, 447, 541
DdeI	CTNAG	1 cut(s)	800
DpnI	GATC	2 cut(s)	557, 570
DpnII	GATC	2 cut(s)	555, 568
EaeI	YGGCCR	2 cut(s)	496, 546
Eco105I	TACGTA	1 cut(s)	426
Eco147I	AGGCCT	2 cut(s)	522, 823
Eco57I	CTGAAG	1 cut(s)	489
EcoRII	CCWGG	1 cut(s)	747
FaeI	CATG	4 cut(s)	44, 296, 584, 773
FaqI	GGGAC	1 cut(s)	360
FatI	CATG	4 cut(s)	40, 292, 580, 769
FauI	CCCGC	1 cut(s)	636
FauNDI	CATATG	1 cut(s)	418
Fnu4HI	GCNGC	3 cut(s)	585, 624, 792
FokI	GGATG	3 cut(s)	91, 473, 662
Fsp4HI	GCNGC	3 cut(s)	585, 624, 792
FspBI	CTAG	2 cut(s)	89, 492
GluI	GCNGC	3 cut(s)	585, 624, 792
GsuI	CTGGAG	2 cut(s)	471, 846
HaeIII	GGCC	5 cut(s)	498, 522, 548, 579, 823
HapII	CCGG	4 cut(s)	139, 188, 236, 549
Hin1II	CATG	4 cut(s)	44, 296, 584, 773
HindIII	AAGCTT	1 cut(s)	484
HinfI	GANTC	3 cut(s)	45, 82, 344
HpaII	CCGG	4 cut(s)	139, 188, 236, 549
HphI	GGTGA	3 cut(s)	128, 331, 446
Hpy166II	GTNNAC	3 cut(s)	64, 447, 878
Hpy188I	TCNGA	2 cut(s)	216, 269
Hpy188III	TCNNGA	2 cut(s)	377, 401
Hpy8I	GTNNAC	3 cut(s)	64, 447, 878
Hpy99I	CGWCG	1 cut(s)	576
HpyAV	CCTTC	2 cut(s)	467, 742
HpyCH4III	ACNGT	1 cut(s)	196
HpyCH4IV	ACGT	4 cut(s)	29, 425, 675, 852
HpyCH4V	TGCA	8 cut(s)	64, 289, 311, 518, 587, 597, 727, 794
HpyF10VI	GCNNNNNNNGC	1 cut(s)	632
HpyF3I	CTNAG	1 cut(s)	800
HpySE526I	ACGT	4 cut(s)	29, 425, 675, 852
Hsp92II	CATG	4 cut(s)	44, 296, 584, 773
Kzo9I	GATC	2 cut(s)	555, 568
LmnI	GCTCC	1 cut(s)	865
Lsp1109I	GCAGC	3 cut(s)	571, 610, 778
LweI	GCATC	5 cut(s)	346, 451, 670, 719, 796
MaeI	CTAG	2 cut(s)	89, 492
MaeII	ACGT	4 cut(s)	29, 425, 675, 852
MaeIII	GTNAC	1 cut(s)	719
MalI	GATC	2 cut(s)	557, 570
MboI	GATC	2 cut(s)	555, 568
MboII	GAAGA	6 cut(s)	77, 164, 376, 495, 565, 855
MhlI	GDGCHC	2 cut(s)	66, 766
MlsI	TGGCCA	1 cut(s)	498
MluCI	AATT	3 cut(s)	9, 318, 699
MluNI	TGGCCA	1 cut(s)	498
MlyI	GAGTC	2 cut(s)	39, 338
MnlI	CCTC	4 cut(s)	533, 569, 777, 820
Mox20I	TGGCCA	1 cut(s)	498
MscI	TGGCCA	1 cut(s)	498
MseI	TTAA	1 cut(s)	147
MslI	CAYNNNNRTG	1 cut(s)	69
Msp20I	TGGCCA	1 cut(s)	498
MspA1I	CMGCKG	1 cut(s)	799
MspI	CCGG	4 cut(s)	139, 188, 236, 549
MspR9I	CCNGG	2 cut(s)	550, 749
MvaI	CCWGG	1 cut(s)	749
MvnI	CGCG	2 cut(s)	643, 841
MwoI	GCNNNNNNNGC	1 cut(s)	632
NciI	CCSGG	1 cut(s)	550
NdeI	CATATG	1 cut(s)	418
NdeII	GATC	2 cut(s)	555, 568
NlaIII	CATG	4 cut(s)	44, 296, 584, 773
NlaIV	GGNNCC	1 cut(s)	765
NmeAIII	GCCGAG	1 cut(s)	791
PceI	AGGCCT	2 cut(s)	522, 823
PfeI	GAWTC	1 cut(s)	82
PinAI	ACCGGT	1 cut(s)	138
PkrI	GCNGC	3 cut(s)	586, 625, 793
PleI	GAGTC	2 cut(s)	39, 338
PpsI	GAGTC	2 cut(s)	39, 338
Ppu21I	YACGTR	1 cut(s)	426
Psp6I	CCWGG	1 cut(s)	747
PspGI	CCWGG	1 cut(s)	747
PspN4I	GGNNCC	1 cut(s)	765
PvuII	CAGCTG	1 cut(s)	799
RsaI	GTAC	4 cut(s)	198, 428, 448, 542
RsaNI	GTAC	4 cut(s)	197, 427, 447, 541
RseI	CAYNNNNRTG	1 cut(s)	69
SaqAI	TTAA	1 cut(s)	147
SatI	GCNGC	3 cut(s)	585, 624, 792
Sau3AI	GATC	2 cut(s)	555, 568
SchI	GAGTC	2 cut(s)	39, 338
ScrFI	CCNGG	2 cut(s)	550, 749
SduI	GDGCHC	2 cut(s)	66, 766
SfaNI	GCATC	5 cut(s)	346, 451, 670, 719, 796
SmiMI	CAYNNNNRTG	1 cut(s)	69
SnaBI	TACGTA	1 cut(s)	426
Sse9I	AATT	3 cut(s)	9, 318, 699
SseBI	AGGCCT	2 cut(s)	522, 823
SsiI	CCGC	1 cut(s)	643
SspMI	CTAG	2 cut(s)	89, 492
StuI	AGGCCT	2 cut(s)	522, 823
StyD4I	CCNGG	2 cut(s)	548, 747
TaaI	ACNGT	1 cut(s)	196
TaiI	ACGT	4 cut(s)	32, 428, 678, 855
TaqI	TCGA	3 cut(s)	126, 574, 781
TasI	AATT	3 cut(s)	9, 318, 699
TatI	WGTACW	1 cut(s)	446
TfiI	GAWTC	1 cut(s)	82
Tru1I	TTAA	1 cut(s)	147
Tru9I	TTAA	1 cut(s)	147
TscAI	CASTG	3 cut(s)	199, 513, 688
TseI	GCWGC	3 cut(s)	584, 623, 791
TspDTI	ATGAA	1 cut(s)	165
TspRI	CASTG	3 cut(s)	199, 513, 688
VneI	GTGCAC	1 cut(s)	62
XapI	RAATTY	1 cut(s)	9
XspI	CTAG	2 cut(s)	89, 492

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.