MD06G1221300.v1.1

Lipid phosphate phosphatase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0007000
Physical Location & Seq
Forward (+)
35288014 .. 35290226
2213 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1221300.v1.1.491

Sequence Viewer

Length: 915 bp
ATGCCCGAGATGCAGTTAGGATCTCACACATTAAGATCTCATGGAGTCAAAGTGGCTAAACTACTGCACAAGTATGACTGGTTAATTCTTCTGCTTCTCGCGGCGGTTGATGTAACTTTGAATCTTATAGAGCCTTTTCATCGTTTCGTTGGCAAAGAAATGATGACTGATCTCAAATACCCTTTTCAGAAAGACACCATTCCCTTCTGGGCCGTTCCAATTTACGCAGTACTCTTGCCTGTCGCCATCTTTCTCGTGTACTACATTTGCAGAAAGGATGTTTATGATTTGCACCATGCCATATTGGGTCTTTTCTATTCTGTTCTCATAACTCTTGTAATAACGGATGCAATCAAGGATGCTGTTGGCCGCCCGCGTCCAAACTTCTTCTGGCGGTGTTTCCCTAATGGAATAGGTATATATGATCCTGCCACTAACAATTGTGTCTGCACTGGAGAGAAGAAGATTATAAAGGAAGGACATAAAAGCTTTCCTAGTGGACATACTTCAGTTTCATTTGCAGGTCTTGGTTTTCTTGCATGGTATTTGTCCGGGAAGATCAAAGTGTTTGATCGTAGAGGCCATTCTGCAAAGCTCTGTATTGTTATTCTTCCGTTACTCTGTGCTGCTCTGGTGGGAATCTCTCATGTGGATGACTACTGGCATCATTGGCAGGATGTCTTTGCAGGAGGTCTTATAGGAATTGTCATAGCTTCGATTTTTTACTTGCAGTCCTTCCCTCTCCCAAACCAGCGGGATGGTGCACCTCATGCGTATTTCCACATGCTGGCTGCAGAGAGGAATGTTGGCGAGTCCGTGTCTCCGGCCACGAGGGTCAACTCTCTTCGGATGCGAAGAACAGATATCGAGAGTCTAGACTTCAGTCCCCAAGATTCGAGTCCGCTAGTCCACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00561 ko00564 ko01110 map00561 map00564 map01110
Pfam Domains
Protein Families
PAP2

Protein Analysis

305

Amino Acids

34.25

Weight (kDa)

8.66

Isoelectric Point (pI)

41.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAP2 PF01569 102 - 245 1.4e-27 PAP2 superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 470
Acc36I ACCTGC 1 cut(s) 512
AccB7I CCANNNNNTGG 1 cut(s) 787
AccII CGCG 2 cut(s) 101, 376
AciI CCGC 7 cut(s) 101, 104, 370, 374, 394, 754, 902
AclWI GGATC 2 cut(s) 28, 419
AcoI YGGCCR 2 cut(s) 367, 825
AcuI CTGAAG 2 cut(s) 492, 865
AfaI GTAC 2 cut(s) 231, 260
AfiI CCNNNNNNNGG 1 cut(s) 787
AgsI TTSAA 1 cut(s) 121
AluBI AGCT 3 cut(s) 489, 595, 713
AluI AGCT 3 cut(s) 489, 595, 713
Alw21I GWGCWC 1 cut(s) 766
Alw26I GTCTC 1 cut(s) 825
Alw44I GTGCAC 1 cut(s) 762
AlwI GGATC 2 cut(s) 28, 419
Ama87I CYCGRG 1 cut(s) 5
AoxI GGCC 4 cut(s) 210, 367, 580, 825
ApaLI GTGCAC 1 cut(s) 762
ApeKI GCWGC 2 cut(s) 626, 791
AspS9I GGNCC 1 cut(s) 210
AsuC2I CCSGG 1 cut(s) 553
AvaI CYCGRG 1 cut(s) 5
BaeGI GKGCMC 1 cut(s) 766
BauI CACGAG 2 cut(s) 254, 829
Bbv12I GWGCWC 1 cut(s) 766
BbvI GCAGC 2 cut(s) 613, 778
BccI CCATC 2 cut(s) 254, 752
BceAI ACGGC 1 cut(s) 197
BcnI CCSGG 1 cut(s) 553
BcoDI GTCTC 1 cut(s) 825
BfaI CTAG 3 cut(s) 495, 875, 905
BfmI CTRYAG 1 cut(s) 792
BfuAI ACCTGC 1 cut(s) 512
BglII AGATCT 1 cut(s) 35
BisI GCNGC 4 cut(s) 102, 370, 627, 792
BlsI GCNGC 4 cut(s) 103, 371, 628, 793
BmcAI AGTACT 1 cut(s) 231
Bme1390I CCNGG 1 cut(s) 553
BmeT110I CYCGRG 1 cut(s) 5
BmgT120I GGNCC 1 cut(s) 210
BmrFI CCNGG 1 cut(s) 553
BmsI GCATC 4 cut(s) 337, 349, 673, 840
BoxI GACNNNNGTC 1 cut(s) 882
BpmI CTGGAG 1 cut(s) 474
BpuMI CCSGG 1 cut(s) 553
BsaXI ACNNNNNCTCC 2 cut(s) 36, 66
Bsc4I CCNNNNNNNGG 1 cut(s) 787
Bse1I ACTGG 3 cut(s) 83, 457, 665
BseGI GGATG 7 cut(s) 283, 352, 364, 658, 682, 763, 855
BseLI CCNNNNNNNGG 1 cut(s) 787
BseNI ACTGG 3 cut(s) 83, 457, 665
BseSI GKGCMC 1 cut(s) 766
BseXI GCAGC 2 cut(s) 613, 778
BsgI GTGCAG 2 cut(s) 50, 433
Bsh1236I CGCG 2 cut(s) 101, 376
BshFI GGCC 4 cut(s) 212, 369, 582, 827
BsiHKAI GWGCWC 1 cut(s) 766
BsiHKCI CYCGRG 1 cut(s) 5
BsiSI CCGG 2 cut(s) 552, 824
BslFI GGGAC 1 cut(s) 870
BslI CCNNNNNNNGG 1 cut(s) 787
BsmAI GTCTC 1 cut(s) 825
BsmFI GGGAC 1 cut(s) 870
BsnI GGCC 4 cut(s) 212, 369, 582, 827
BsoBI CYCGRG 1 cut(s) 5
Bsp1286I GDGCHC 1 cut(s) 766
Bsp143I GATC 6 cut(s) 20, 35, 169, 424, 558, 571
BspACI CCGC 7 cut(s) 101, 104, 370, 374, 394, 754, 902
BspANI GGCC 4 cut(s) 212, 369, 582, 827
BspFNI CGCG 2 cut(s) 101, 376
BspMAI CTGCAG 1 cut(s) 796
BspMI ACCTGC 1 cut(s) 512
BspPI GGATC 2 cut(s) 28, 419
BsrI ACTGG 3 cut(s) 83, 457, 665
BssMI GATC 6 cut(s) 20, 35, 169, 424, 558, 571
BssSI CACGAG 2 cut(s) 254, 829
Bst2BI CACGAG 2 cut(s) 254, 829
Bst6I CTCTTC 1 cut(s) 849
BstAPI GCANNNNNTGC 1 cut(s) 770
BstC8I GCNNGC 2 cut(s) 374, 789
BstF5I GGATG 7 cut(s) 283, 352, 364, 658, 682, 763, 855
BstFNI CGCG 2 cut(s) 101, 376
BstKTI GATC 6 cut(s) 23, 38, 172, 427, 561, 574
BstMAI GTCTC 1 cut(s) 825
BstMBI GATC 6 cut(s) 20, 35, 169, 424, 558, 571
BstMWI GCNNNNNNNGC 3 cut(s) 10, 670, 770
BstNSI RCATGY 1 cut(s) 787
BstPAI GACNNNNGTC 1 cut(s) 882
BstSCI CCNGG 1 cut(s) 551
BstSFI CTRYAG 1 cut(s) 792
BstSLI GKGCMC 1 cut(s) 766
BstUI CGCG 2 cut(s) 101, 376
BstV1I GCAGC 2 cut(s) 613, 778
BstX2I RGATCY 2 cut(s) 20, 35
BstXI CCANNNNNNTGG 1 cut(s) 758
BstYI RGATCY 2 cut(s) 20, 35
BsuRI GGCC 4 cut(s) 212, 369, 582, 827
BtsCI GGATG 7 cut(s) 283, 352, 364, 658, 682, 763, 855
BtsIMutI CAGTG 1 cut(s) 450
BveI ACCTGC 1 cut(s) 512
Cac8I GCNNGC 2 cut(s) 374, 789
Cfr13I GGNCC 1 cut(s) 210
CseI GACGC 1 cut(s) 365
Csp6I GTAC 2 cut(s) 230, 259
CviAII CATG 6 cut(s) 41, 296, 540, 647, 770, 784
CviQI GTAC 2 cut(s) 230, 259
DpnI GATC 6 cut(s) 22, 37, 171, 426, 560, 573
DpnII GATC 6 cut(s) 20, 35, 169, 424, 558, 571
EaeI YGGCCR 2 cut(s) 367, 825
Eam1104I CTCTTC 1 cut(s) 849
EarI CTCTTC 1 cut(s) 849
Eco32I GATATC 1 cut(s) 865
Eco57I CTGAAG 2 cut(s) 492, 865
Eco88I CYCGRG 1 cut(s) 5
EcoRV GATATC 1 cut(s) 865
FaeI CATG 6 cut(s) 44, 299, 543, 650, 773, 787
FaqI GGGAC 1 cut(s) 870
FatI CATG 6 cut(s) 40, 295, 539, 646, 769, 783
FauI CCCGC 2 cut(s) 381, 747
Fnu4HI GCNGC 4 cut(s) 102, 370, 627, 792
FokI GGATG 7 cut(s) 290, 359, 371, 665, 689, 770, 862
Fsp4HI GCNGC 4 cut(s) 102, 370, 627, 792
FspBI CTAG 3 cut(s) 495, 875, 905
GluI GCNGC 4 cut(s) 102, 370, 627, 792
GsuI CTGGAG 1 cut(s) 474
HaeIII GGCC 4 cut(s) 212, 369, 582, 827
HapII CCGG 2 cut(s) 552, 824
HgaI GACGC 1 cut(s) 365
Hin1II CATG 6 cut(s) 44, 299, 543, 650, 773, 787
HincII GTYRAC 1 cut(s) 838
HindII GTYRAC 1 cut(s) 838
HindIII AAGCTT 1 cut(s) 487
HinfI GANTC 7 cut(s) 45, 121, 639, 812, 871, 893, 898
HpaII CCGG 2 cut(s) 552, 824
Hpy166II GTNNAC 5 cut(s) 259, 500, 764, 838, 910
Hpy188I TCNGA 2 cut(s) 189, 849
Hpy188III TCNNGA 2 cut(s) 868, 875
Hpy8I GTNNAC 5 cut(s) 259, 500, 764, 838, 910
HpyAV CCTTC 3 cut(s) 214, 470, 745
HpyF10VI GCNNNNNNNGC 3 cut(s) 10, 670, 770
Hsp92II CATG 6 cut(s) 44, 299, 543, 650, 773, 787
Kzo9I GATC 6 cut(s) 20, 35, 169, 424, 558, 571
Lsp1109I GCAGC 2 cut(s) 613, 778
LweI GCATC 4 cut(s) 337, 349, 673, 840
MaeI CTAG 3 cut(s) 495, 875, 905
MaeIII GTNAC 2 cut(s) 112, 615
MalI GATC 6 cut(s) 22, 37, 171, 426, 560, 573
MboI GATC 6 cut(s) 20, 35, 169, 424, 558, 571
MboII GAAGA 8 cut(s) 80, 379, 472, 475, 568, 602, 836, 867
MfeI CAATTG 1 cut(s) 439
MflI RGATCY 2 cut(s) 20, 35
MhlI GDGCHC 1 cut(s) 766
MluCI AATT 4 cut(s) 84, 219, 439, 702
MlyI GAGTC 4 cut(s) 54, 821, 880, 907
MnlI CCTC 6 cut(s) 572, 683, 750, 777, 792, 825
MseI TTAA 2 cut(s) 32, 83
MslI CAYNNNNRTG 2 cut(s) 72, 651
MspA1I CMGCKG 1 cut(s) 754
MspI CCGG 2 cut(s) 552, 824
MspR9I CCNGG 1 cut(s) 553
MunI CAATTG 1 cut(s) 439
MvnI CGCG 2 cut(s) 101, 376
MwoI GCNNNNNNNGC 3 cut(s) 10, 670, 770
NciI CCSGG 1 cut(s) 553
NdeII GATC 6 cut(s) 20, 35, 169, 424, 558, 571
NlaIII CATG 6 cut(s) 44, 299, 543, 650, 773, 787
NspI RCATGY 1 cut(s) 787
PfeI GAWTC 3 cut(s) 121, 639, 893
PflMI CCANNNNNTGG 1 cut(s) 787
PfoI TCCNGGA 1 cut(s) 551
PkrI GCNGC 4 cut(s) 103, 371, 628, 793
PleI GAGTC 4 cut(s) 53, 820, 879, 906
PpsI GAGTC 4 cut(s) 53, 820, 879, 906
PshAI GACNNNNGTC 1 cut(s) 882
PsiI TTATAA 1 cut(s) 470
PspPI GGNCC 1 cut(s) 210
PstI CTGCAG 1 cut(s) 796
PsuI RGATCY 2 cut(s) 20, 35
RsaI GTAC 2 cut(s) 231, 260
RsaNI GTAC 2 cut(s) 230, 259
RseI CAYNNNNRTG 2 cut(s) 72, 651
SaqAI TTAA 2 cut(s) 32, 83
SatI GCNGC 4 cut(s) 102, 370, 627, 792
Sau3AI GATC 6 cut(s) 20, 35, 169, 424, 558, 571
Sau96I GGNCC 1 cut(s) 210
ScaI AGTACT 1 cut(s) 231
SchI GAGTC 4 cut(s) 54, 821, 880, 907
ScrFI CCNGG 1 cut(s) 553
SduI GDGCHC 1 cut(s) 766
SetI ASST 7 cut(s) 418, 491, 526, 597, 694, 715, 769
SfaNI GCATC 4 cut(s) 337, 349, 673, 840
SfcI CTRYAG 1 cut(s) 792
SmiMI CAYNNNNRTG 2 cut(s) 72, 651
Sse9I AATT 4 cut(s) 84, 219, 439, 702
SsiI CCGC 7 cut(s) 101, 104, 370, 374, 394, 754, 902
SspMI CTAG 3 cut(s) 495, 875, 905
StyD4I CCNGG 1 cut(s) 551
TaqI TCGA 3 cut(s) 716, 867, 896
TasI AATT 4 cut(s) 84, 219, 439, 702
TatI WGTACW 2 cut(s) 229, 258
TauI GCSGC 2 cut(s) 104, 372
TfiI GAWTC 3 cut(s) 121, 639, 893
Tru1I TTAA 2 cut(s) 32, 83
Tru9I TTAA 2 cut(s) 32, 83
TscAI CASTG 1 cut(s) 457
TseI GCWGC 2 cut(s) 626, 791
TspDTI ATGAA 2 cut(s) 128, 504
TspGWI ACGGA 3 cut(s) 359, 603, 805
TspRI CASTG 1 cut(s) 457
Van91I CCANNNNNTGG 1 cut(s) 787
VneI GTGCAC 1 cut(s) 762
XbaI TCTAGA 1 cut(s) 874
XceI RCATGY 1 cut(s) 787
XcmI CCANNNNNNNNNTGG 1 cut(s) 387
XspI CTAG 3 cut(s) 495, 875, 905
ZrmI AGTACT 1 cut(s) 231
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.