FvH4_5g16740

Lipid phosphate phosphatase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0007000
Physical Location & Seq
Forward (+)
9557112 .. 9560730
3619 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g16740.t3

Sequence Viewer

Length: 882 bp
ATGTCAGACGTTCATATGGGATCTCACACACTGAAATCTCATGGAGTCAAAGTGGCTAAATCGCACATGTATGACTGGATGATTCTTGTAGTTCTTGGGGCCATCGATATTACTTTGAATCTCATCGAGCCTTTTCACCGGTTTATTAGTGAACAAATGATGAATGATGTATCCTACCCTTTTCATCCAGACACTATACCTATGTGGGCTGTTCCGATTTTTGCAATAATCTTGCCGGCCGGTATCTTTTTTGCTTTCTACCTCAAGAGAAAGGATGTTTATGACTTGCACCATTCTATATTGGGTCTTCTCTATTCAGTTCTGATAACTCTGGTTATCACTGATTCAATCAAAGATGCTGTTGGTCGCCCCCGTCCCAACTTCTTCTGGCGGTGTTTTCCTGATGGAATAGGTGTATATGATCAGAAGTATGGCAATGTTATGTGTACTGGAGATAAGTTGATTATAAAGGAAGGATATAAAAGCTTTCCTAGTGGTCATTCTTCAGTTTCATTTGCAGGCCTCGGTTTTCTTTCGTGGTACTTGGCTGGGAAGATCAAAGTGTTTGATCGTCGAGGCCATAGTGCAAAGCTGTGCATTGTGCTGTTTCCACTACTTTGTGCTGCTTTGGTTGCAACCTCACGGGTGGATGACTACTGGCATCATTGGCAAGACGTCTTGTGTGGTAGTCTTATAGGAATTGTCATAGCATCAATTTGTTACTTGCAGTCCTTCCCTTATCCAAACAAGGAAGAGGAGCGGAATGATGCCTTGGCGACAAGGCTTGAACCTCTTCATGCACGAAGATCAGATGTCGAAACTCCAGATGATTCCATTCCACCTGAAGCTAGATGCATCTATGCACTTGGAAGCTGTACGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00561 ko00564 ko01110 map00561 map00564 map01110
Pfam Domains
Protein Families
PAP2

Protein Analysis

294

Amino Acids

33.05

Weight (kDa)

6.66

Isoelectric Point (pI)

41.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAP2 PF01569 101 - 244 2e-30 PAP2 superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 467
AatII GACGTC 1 cut(s) 678
AccBSI CCGCTC 1 cut(s) 760
AciI CCGC 2 cut(s) 391, 760
AclWI GGATC 1 cut(s) 28
AcoI YGGCCR 1 cut(s) 237
AcuI CTGAAG 2 cut(s) 489, 864
AcyI GRCGYC 1 cut(s) 675
AfaI GTAC 3 cut(s) 448, 542, 877
AflIII ACRYGT 1 cut(s) 66
AgeI ACCGGT 1 cut(s) 138
AgsI TTSAA 3 cut(s) 118, 348, 788
AjuI GAANNNNNNNTTGG 2 cut(s) 755, 787
AluBI AGCT 4 cut(s) 486, 592, 848, 873
AluI AGCT 4 cut(s) 486, 592, 848, 873
AlwI GGATC 1 cut(s) 28
AoxI GGCC 4 cut(s) 99, 237, 520, 577
ApeKI GCWGC 1 cut(s) 623
AsiGI ACCGGT 1 cut(s) 138
Asp700I GAANNNNTTC 1 cut(s) 792
AspS9I GGNCC 1 cut(s) 99
AsuHPI GGTGA 1 cut(s) 128
BbsI GAAGAC 1 cut(s) 299
BbvI GCAGC 1 cut(s) 610
BccI CCATC 2 cut(s) 110, 398
BciVI GTATCC 1 cut(s) 181
BclI TGATCA 1 cut(s) 421
BfaI CTAG 2 cut(s) 492, 849
BfuI GTATCC 1 cut(s) 181
BisI GCNGC 1 cut(s) 624
BlsI GCNGC 1 cut(s) 625
BmgT120I GGNCC 1 cut(s) 99
BmiI GGNNCC 1 cut(s) 100
BmsI GCATC 6 cut(s) 346, 670, 719, 757, 842, 864
BpiI GAAGAC 1 cut(s) 299
BpmI CTGGAG 2 cut(s) 471, 807
BpuEI CTTGAG 1 cut(s) 248
Bsa29I ATCGAT 1 cut(s) 105
BsaAI YACGTR 1 cut(s) 879
BsaHI GRCGYC 1 cut(s) 675
BsaJI CCNNGG 2 cut(s) 523, 771
BsaWI WCCGGW 1 cut(s) 138
BsaXI ACNNNNNCTCC 2 cut(s) 36, 66
Bse118I RCCGGY 3 cut(s) 138, 235, 239
Bse1I ACTGG 3 cut(s) 80, 454, 662
Bse3DI GCAATG 1 cut(s) 442
BseCI ATCGAT 1 cut(s) 105
BseDI CCNNGG 2 cut(s) 523, 771
BseGI GGATG 4 cut(s) 84, 184, 280, 655
BseMI GCAATG 1 cut(s) 442
BseNI ACTGG 3 cut(s) 80, 454, 662
BseRI GAGGAG 1 cut(s) 770
BseX3I CGGCCG 1 cut(s) 237
BseXI GCAGC 1 cut(s) 610
BseYI CCCAGC 1 cut(s) 548
Bsh1285I CGRYCG 1 cut(s) 240
BshFI GGCC 4 cut(s) 101, 239, 522, 579
BshTI ACCGGT 1 cut(s) 138
BshVI ATCGAT 1 cut(s) 105
BsiEI CGRYCG 1 cut(s) 240
BsiSI CCGG 3 cut(s) 139, 236, 240
BslFI GGGAC 1 cut(s) 360
BsmFI GGGAC 1 cut(s) 360
BsnI GGCC 4 cut(s) 101, 239, 522, 579
Bsp143I GATC 5 cut(s) 20, 421, 555, 568, 806
BspACI CCGC 2 cut(s) 391, 760
BspANI GGCC 4 cut(s) 101, 239, 522, 579
BspDI ATCGAT 1 cut(s) 105
BspLI GGNNCC 1 cut(s) 100
BspPI GGATC 1 cut(s) 28
BsrBI CCGCTC 1 cut(s) 760
BsrDI GCAATG 1 cut(s) 442
BsrFI RCCGGY 3 cut(s) 138, 235, 239
BsrI ACTGG 3 cut(s) 80, 454, 662
BssAI RCCGGY 3 cut(s) 138, 235, 239
BssECI CCNNGG 2 cut(s) 523, 771
BssMI GATC 5 cut(s) 20, 421, 555, 568, 806
BssNI GRCGYC 1 cut(s) 675
BssT1I CCWWGG 1 cut(s) 771
Bst6I CTCTTC 2 cut(s) 747, 798
BstACI GRCGYC 1 cut(s) 675
BstBAI YACGTR 1 cut(s) 879
BstC8I GCNNGC 2 cut(s) 237, 520
BstF5I GGATG 4 cut(s) 84, 184, 280, 655
BstKTI GATC 5 cut(s) 23, 424, 558, 571, 809
BstMBI GATC 5 cut(s) 20, 421, 555, 568, 806
BstMCI CGRYCG 1 cut(s) 240
BstMWI GCNNNNNNNGC 2 cut(s) 632, 667
BstNSI RCATGY 1 cut(s) 70
BstV1I GCAGC 1 cut(s) 610
BstV2I GAAGAC 1 cut(s) 299
BstX2I RGATCY 1 cut(s) 20
BstYI RGATCY 1 cut(s) 20
BstZI CGGCCG 1 cut(s) 237
Bsu15I ATCGAT 1 cut(s) 105
BsuI GTATCC 1 cut(s) 181
BsuRI GGCC 4 cut(s) 101, 239, 522, 579
BsuTUI ATCGAT 1 cut(s) 105
BtsCI GGATG 4 cut(s) 84, 184, 280, 655
BtsIMutI CAGTG 2 cut(s) 29, 339
Cac8I GCNNGC 2 cut(s) 237, 520
Cfr10I RCCGGY 3 cut(s) 138, 235, 239
Cfr13I GGNCC 1 cut(s) 99
ClaI ATCGAT 1 cut(s) 105
Csp6I GTAC 3 cut(s) 447, 541, 876
CspAI ACCGGT 1 cut(s) 138
CviAII CATG 3 cut(s) 41, 67, 797
CviQI GTAC 3 cut(s) 447, 541, 876
DpnI GATC 5 cut(s) 22, 423, 557, 570, 808
DpnII GATC 5 cut(s) 20, 421, 555, 568, 806
EaeI YGGCCR 1 cut(s) 237
EagI CGGCCG 1 cut(s) 237
Eam1104I CTCTTC 2 cut(s) 747, 798
EarI CTCTTC 2 cut(s) 747, 798
EclXI CGGCCG 1 cut(s) 237
Eco130I CCWWGG 1 cut(s) 771
Eco147I AGGCCT 1 cut(s) 522
Eco52I CGGCCG 1 cut(s) 237
Eco57I CTGAAG 2 cut(s) 489, 864
EcoT14I CCWWGG 1 cut(s) 771
EcoT22I ATGCAT 1 cut(s) 857
ErhI CCWWGG 1 cut(s) 771
FaeI CATG 3 cut(s) 44, 70, 800
FaqI GGGAC 1 cut(s) 360
FatI CATG 3 cut(s) 40, 66, 796
FauNDI CATATG 1 cut(s) 15
FbaI TGATCA 1 cut(s) 421
Fnu4HI GCNGC 1 cut(s) 624
FokI GGATG 4 cut(s) 91, 171, 287, 662
Fsp4HI GCNGC 1 cut(s) 624
FspBI CTAG 2 cut(s) 492, 849
GluI GCNGC 1 cut(s) 624
GsaI CCCAGC 1 cut(s) 552
GsuI CTGGAG 2 cut(s) 471, 807
HaeIII GGCC 4 cut(s) 101, 239, 522, 579
HapII CCGG 3 cut(s) 139, 236, 240
Hin1I GRCGYC 1 cut(s) 675
Hin1II CATG 3 cut(s) 44, 70, 800
HindIII AAGCTT 1 cut(s) 484
HinfI GANTC 5 cut(s) 45, 82, 118, 344, 830
HpaII CCGG 3 cut(s) 139, 236, 240
HphI GGTGA 1 cut(s) 128
Hpy166II GTNNAC 2 cut(s) 152, 447
Hpy188I TCNGA 5 cut(s) 7, 216, 324, 426, 811
Hpy188III TCNNGA 4 cut(s) 188, 265, 401, 824
Hpy8I GTNNAC 2 cut(s) 152, 447
Hpy99I CGWCG 1 cut(s) 576
HpyAV CCTTC 2 cut(s) 467, 742
HpyCH4IV ACGT 3 cut(s) 9, 675, 878
HpyF10VI GCNNNNNNNGC 2 cut(s) 632, 667
HpySE526I ACGT 3 cut(s) 9, 675, 878
Hsp92I GRCGYC 1 cut(s) 675
Hsp92II CATG 3 cut(s) 44, 70, 800
KroI GCCGGC 1 cut(s) 235
KroNI GCCGGC 1 cut(s) 237
Ksp22I TGATCA 1 cut(s) 421
Kzo9I GATC 5 cut(s) 20, 421, 555, 568, 806
LmnI GCTCC 1 cut(s) 757
Lsp1109I GCAGC 1 cut(s) 610
LweI GCATC 6 cut(s) 346, 670, 719, 757, 842, 864
MaeI CTAG 2 cut(s) 492, 849
MaeII ACGT 3 cut(s) 9, 675, 878
MaeIII GTNAC 1 cut(s) 719
MalI GATC 5 cut(s) 22, 423, 557, 570, 808
MbiI CCGCTC 1 cut(s) 760
MboI GATC 5 cut(s) 20, 421, 555, 568, 806
MboII GAAGA 7 cut(s) 299, 376, 495, 565, 764, 785, 816
MflI RGATCY 1 cut(s) 20
MluCI AATT 2 cut(s) 699, 714
MlyI GAGTC 1 cut(s) 54
MnlI CCTC 6 cut(s) 272, 533, 569, 649, 748, 801
Mph1103I ATGCAT 1 cut(s) 857
MroNI GCCGGC 1 cut(s) 235
MroXI GAANNNNTTC 1 cut(s) 792
MslI CAYNNNNRTG 1 cut(s) 69
MspI CCGG 3 cut(s) 139, 236, 240
MwoI GCNNNNNNNGC 2 cut(s) 632, 667
NaeI GCCGGC 1 cut(s) 237
NdeI CATATG 1 cut(s) 15
NdeII GATC 5 cut(s) 20, 421, 555, 568, 806
NgoMIV GCCGGC 1 cut(s) 235
NlaIII CATG 3 cut(s) 44, 70, 800
NlaIV GGNNCC 1 cut(s) 100
NsiI ATGCAT 1 cut(s) 857
NspI RCATGY 1 cut(s) 70
PceI AGGCCT 1 cut(s) 522
PciI ACATGT 1 cut(s) 66
PdiI GCCGGC 1 cut(s) 237
PdmI GAANNNNTTC 1 cut(s) 792
PfeI GAWTC 4 cut(s) 82, 118, 344, 830
PinAI ACCGGT 1 cut(s) 138
PkrI GCNGC 1 cut(s) 625
PleI GAGTC 1 cut(s) 53
PpsI GAGTC 1 cut(s) 53
Ppu21I YACGTR 1 cut(s) 879
PscI ACATGT 1 cut(s) 66
PsiI TTATAA 1 cut(s) 467
PspFI CCCAGC 1 cut(s) 548
PspN4I GGNNCC 1 cut(s) 100
PspPI GGNCC 1 cut(s) 99
PsuI RGATCY 1 cut(s) 20
RsaI GTAC 3 cut(s) 448, 542, 877
RsaNI GTAC 3 cut(s) 447, 541, 876
RseI CAYNNNNRTG 1 cut(s) 69
SatI GCNGC 1 cut(s) 624
Sau3AI GATC 5 cut(s) 20, 421, 555, 568, 806
Sau96I GGNCC 1 cut(s) 99
SchI GAGTC 1 cut(s) 54
SfaNI GCATC 6 cut(s) 346, 670, 719, 757, 842, 864
SmiMI CAYNNNNRTG 1 cut(s) 69
SmlI CTYRAG 1 cut(s) 263
SmoI CTYRAG 1 cut(s) 263
Sse9I AATT 2 cut(s) 699, 714
SseBI AGGCCT 1 cut(s) 522
SsiI CCGC 2 cut(s) 391, 760
SspMI CTAG 2 cut(s) 492, 849
StuI AGGCCT 1 cut(s) 522
StyI CCWWGG 1 cut(s) 771
TaiI ACGT 3 cut(s) 12, 678, 881
TaqI TCGA 4 cut(s) 105, 126, 574, 816
TasI AATT 2 cut(s) 699, 714
TatI WGTACW 1 cut(s) 446
TfiI GAWTC 4 cut(s) 82, 118, 344, 830
TscAI CASTG 2 cut(s) 36, 346
TseI GCWGC 1 cut(s) 623
TspDTI ATGAA 4 cut(s) 173, 176, 501, 785
TspRI CASTG 2 cut(s) 36, 346
XceI RCATGY 1 cut(s) 70
XmnI GAANNNNTTC 1 cut(s) 792
XspI CTAG 2 cut(s) 492, 849
ZraI GACGTC 1 cut(s) 676
Zsp2I ATGCAT 1 cut(s) 857
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.