MD14G1230500.v1.1

Lipid phosphate phosphatase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr14
OG0007000
Physical Location & Seq
Forward (+)
31121839 .. 31124159
2321 bp
Loading structure...
UTR
Exon/CDS
Intron
MD14G1230500.v1.1.491

Sequence Viewer

Length: 891 bp
ATGCCCGAGATGCAGATAATTTCTCACACATTAAGATCTCATGGAGTCAAAGTGGCTAAAGTGCACAAGTATGACTGGTTAATTCTTGTACTTCTCGCGGCGGTTGATCTATCTTTGAATTTTATAGAGCCTTTTCATCGTTTCGTTGGCGAAGAAATGATGACTGATCTCAAATACCCTTTTCAGAAAGACACCATTCCTTTCTGGGCTGTTCCAATTTACGCGGTACTCTTGCCTCTCTCCATCTTTCTCGTGTACTACATTTGCAGAAAGGATGTTTATGATTTGCACCATGCCATATTGGGTCTTTTCTATTCTGTTCTCATAACTCTTGTAATAACGGATGCAATCAAGGATGCTGTTGGCCGCCCGCGTCCAAACTTCTTCTGGCGGTGCTTCCCTAATGGAATAGGTGTATATGATCCAAACACTAACAATGCTATCTGCACTGGAGAGAAAAAGATTATAAAGGAAGGACATAAAAGCTTTCCTAGCGGGCATACTTCAGTTTCATTTGCAGGTCTTGGTTTTCTTGCATGGTATTTATCGGGGAAGATCAAAGTGTTTGACCGTAGAGGCCATTCCGCAAAGCTCTGCATTGTATTTCTGCCGTTACTCTGTGCTGCTCTCGTGGGAATCTCTCGTGTGGATGACTACTGGCATCATTGGCAGGACGTCTTTGCTGGAGGTCTTATAGGAATTGTCATAGCTTCGATTTGTTACTTGCAATCCTTCCCTCTCCCAAACCAGCGGGATGGGTGGGCACCTCATGCGTATTTCCTCATGCTGGATGCGGAGAGGAATGTTGACGAGTCCTTATCTCCAGCCACGAGGGTTAACTCTCTTCGTATGCGAAGAACAGATATCGAGAGTCCAGGCTCAAGTCCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00561 ko00564 ko01110 map00561 map00564 map01110
Pfam Domains
Protein Families
PAP2

Protein Analysis

297

Amino Acids

33.53

Weight (kDa)

8.46

Isoelectric Point (pI)

39.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAP2 PF01569 101 - 244 3.7e-30 PAP2 superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 467
AatII GACGTC 1 cut(s) 678
Acc36I ACCTGC 1 cut(s) 509
AccB1I GGYRCC 1 cut(s) 763
AccII CGCG 3 cut(s) 98, 224, 373
AclWI GGATC 1 cut(s) 416
AcoI YGGCCR 1 cut(s) 364
AcsI RAATTY 1 cut(s) 118
AcuI CTGAAG 1 cut(s) 489
AcyI GRCGYC 1 cut(s) 675
AfaI GTAC 3 cut(s) 90, 228, 257
AfiI CCNNNNNNNGG 1 cut(s) 787
AgsI TTSAA 1 cut(s) 118
AjnI CCWGG 1 cut(s) 874
AluBI AGCT 3 cut(s) 486, 592, 710
AluI AGCT 3 cut(s) 486, 592, 710
Alw21I GWGCWC 1 cut(s) 66
Alw44I GTGCAC 1 cut(s) 62
AlwI GGATC 1 cut(s) 416
Ama87I CYCGRG 1 cut(s) 5
AoxI GGCC 2 cut(s) 364, 577
ApaLI GTGCAC 1 cut(s) 62
ApeKI GCWGC 1 cut(s) 623
ApoI RAATTY 1 cut(s) 118
AvaI CYCGRG 1 cut(s) 5
BaeGI GKGCMC 2 cut(s) 66, 766
BanI GGYRCC 1 cut(s) 763
BauI CACGAG 4 cut(s) 251, 629, 642, 829
Bbv12I GWGCWC 1 cut(s) 66
BbvI GCAGC 1 cut(s) 610
BccI CCATC 2 cut(s) 251, 749
BceAI ACGGC 1 cut(s) 595
BciT130I CCWGG 1 cut(s) 876
BfaI CTAG 1 cut(s) 492
BfuAI ACCTGC 1 cut(s) 509
BglII AGATCT 1 cut(s) 35
BisI GCNGC 3 cut(s) 99, 367, 624
BlsI GCNGC 3 cut(s) 100, 368, 625
Bme1390I CCNGG 1 cut(s) 876
BmeT110I CYCGRG 1 cut(s) 5
BmiI GGNNCC 1 cut(s) 765
BmrFI CCNGG 1 cut(s) 876
BmsI GCATC 4 cut(s) 334, 346, 670, 781
BpmI CTGGAG 3 cut(s) 471, 705, 807
BpuEI CTTGAG 1 cut(s) 865
BsaHI GRCGYC 1 cut(s) 675
BsaXI ACNNNNNCTCC 2 cut(s) 36, 66
Bsc4I CCNNNNNNNGG 1 cut(s) 787
Bse1I ACTGG 3 cut(s) 80, 454, 662
BseBI CCWGG 1 cut(s) 876
BseGI GGATG 6 cut(s) 280, 349, 361, 655, 760, 796
BseLI CCNNNNNNNGG 1 cut(s) 787
BseNI ACTGG 3 cut(s) 80, 454, 662
BseSI GKGCMC 2 cut(s) 66, 766
BseXI GCAGC 1 cut(s) 610
BsgI GTGCAG 1 cut(s) 430
Bsh1236I CGCG 3 cut(s) 98, 224, 373
BshFI GGCC 2 cut(s) 366, 579
BshNI GGYRCC 1 cut(s) 763
BsiHKAI GWGCWC 1 cut(s) 66
BsiHKCI CYCGRG 1 cut(s) 5
BslI CCNNNNNNNGG 1 cut(s) 787
BsnI GGCC 2 cut(s) 366, 579
BsoBI CYCGRG 1 cut(s) 5
Bsp1286I GDGCHC 2 cut(s) 66, 766
Bsp143I GATC 5 cut(s) 35, 106, 166, 421, 555
BspANI GGCC 2 cut(s) 366, 579
BspFNI CGCG 3 cut(s) 98, 224, 373
BspLI GGNNCC 1 cut(s) 765
BspMI ACCTGC 1 cut(s) 509
BspPI GGATC 1 cut(s) 416
BspT107I GGYRCC 1 cut(s) 763
BsrI ACTGG 3 cut(s) 80, 454, 662
BssMI GATC 5 cut(s) 35, 106, 166, 421, 555
BssNI GRCGYC 1 cut(s) 675
BssSI CACGAG 4 cut(s) 251, 629, 642, 829
Bst2BI CACGAG 4 cut(s) 251, 629, 642, 829
Bst2UI CCWGG 1 cut(s) 876
Bst4CI ACNGT 1 cut(s) 572
Bst6I CTCTTC 1 cut(s) 849
BstACI GRCGYC 1 cut(s) 675
BstAPI GCANNNNNTGC 1 cut(s) 770
BstC8I GCNNGC 2 cut(s) 371, 497
BstF5I GGATG 6 cut(s) 280, 349, 361, 655, 760, 796
BstFNI CGCG 3 cut(s) 98, 224, 373
BstKTI GATC 5 cut(s) 38, 109, 169, 424, 558
BstMBI GATC 5 cut(s) 35, 106, 166, 421, 555
BstMWI GCNNNNNNNGC 4 cut(s) 10, 492, 667, 770
BstNI CCWGG 1 cut(s) 876
BstSCI CCNGG 1 cut(s) 874
BstSLI GKGCMC 2 cut(s) 66, 766
BstUI CGCG 3 cut(s) 98, 224, 373
BstV1I GCAGC 1 cut(s) 610
BstX2I RGATCY 1 cut(s) 35
BstXI CCANNNNNNTGG 1 cut(s) 755
BstYI RGATCY 1 cut(s) 35
BsuRI GGCC 2 cut(s) 366, 579
BtsCI GGATG 6 cut(s) 280, 349, 361, 655, 760, 796
BtsIMutI CAGTG 1 cut(s) 447
BveI ACCTGC 1 cut(s) 509
Cac8I GCNNGC 2 cut(s) 371, 497
CseI GACGC 1 cut(s) 362
Csp6I GTAC 3 cut(s) 89, 227, 256
CviAII CATG 5 cut(s) 41, 293, 537, 770, 784
CviQI GTAC 3 cut(s) 89, 227, 256
DpnI GATC 5 cut(s) 37, 108, 168, 423, 557
DpnII GATC 5 cut(s) 35, 106, 166, 421, 555
EaeI YGGCCR 1 cut(s) 364
Eam1104I CTCTTC 1 cut(s) 849
EarI CTCTTC 1 cut(s) 849
Eco32I GATATC 1 cut(s) 865
Eco57I CTGAAG 1 cut(s) 489
Eco88I CYCGRG 1 cut(s) 5
EcoRII CCWGG 1 cut(s) 874
EcoRV GATATC 1 cut(s) 865
FaeI CATG 5 cut(s) 44, 296, 540, 773, 787
FatI CATG 5 cut(s) 40, 292, 536, 769, 783
FauI CCCGC 3 cut(s) 378, 488, 744
Fnu4HI GCNGC 3 cut(s) 99, 367, 624
FokI GGATG 6 cut(s) 287, 356, 368, 662, 767, 803
Fsp4HI GCNGC 3 cut(s) 99, 367, 624
FspBI CTAG 1 cut(s) 492
GluI GCNGC 3 cut(s) 99, 367, 624
GsuI CTGGAG 3 cut(s) 471, 705, 807
HaeIII GGCC 2 cut(s) 366, 579
HgaI GACGC 1 cut(s) 362
Hin1I GRCGYC 1 cut(s) 675
Hin1II CATG 5 cut(s) 44, 296, 540, 773, 787
HincII GTYRAC 2 cut(s) 808, 838
HindII GTYRAC 2 cut(s) 808, 838
HindIII AAGCTT 1 cut(s) 484
HinfI GANTC 4 cut(s) 45, 636, 812, 871
HpaI GTTAAC 1 cut(s) 838
Hpy166II GTNNAC 4 cut(s) 64, 256, 808, 838
Hpy188I TCNGA 1 cut(s) 186
Hpy188III TCNNGA 1 cut(s) 868
Hpy8I GTNNAC 4 cut(s) 64, 256, 808, 838
HpyAV CCTTC 2 cut(s) 467, 742
HpyCH4III ACNGT 1 cut(s) 572
HpyCH4IV ACGT 1 cut(s) 675
HpyF10VI GCNNNNNNNGC 4 cut(s) 10, 492, 667, 770
HpySE526I ACGT 1 cut(s) 675
Hsp92I GRCGYC 1 cut(s) 675
Hsp92II CATG 5 cut(s) 44, 296, 540, 773, 787
KspAI GTTAAC 1 cut(s) 838
Kzo9I GATC 5 cut(s) 35, 106, 166, 421, 555
Lsp1109I GCAGC 1 cut(s) 610
LweI GCATC 4 cut(s) 334, 346, 670, 781
MaeI CTAG 1 cut(s) 492
MaeII ACGT 1 cut(s) 675
MaeIII GTNAC 2 cut(s) 612, 719
MalI GATC 5 cut(s) 37, 108, 168, 423, 557
MboI GATC 5 cut(s) 35, 106, 166, 421, 555
MboII GAAGA 5 cut(s) 164, 376, 565, 836, 867
MflI RGATCY 1 cut(s) 35
MhlI GDGCHC 2 cut(s) 66, 766
MluCI AATT 5 cut(s) 18, 81, 118, 216, 699
MlyI GAGTC 3 cut(s) 54, 821, 880
MnlI CCTC 8 cut(s) 246, 569, 680, 747, 777, 791, 792, 825
MseI TTAA 3 cut(s) 32, 80, 837
MslI CAYNNNNRTG 1 cut(s) 69
MspA1I CMGCKG 1 cut(s) 751
MspR9I CCNGG 1 cut(s) 876
MvaI CCWGG 1 cut(s) 876
MvnI CGCG 3 cut(s) 98, 224, 373
MwoI GCNNNNNNNGC 4 cut(s) 10, 492, 667, 770
NdeII GATC 5 cut(s) 35, 106, 166, 421, 555
NlaIII CATG 5 cut(s) 44, 296, 540, 773, 787
NlaIV GGNNCC 1 cut(s) 765
PfeI GAWTC 1 cut(s) 636
PkrI GCNGC 3 cut(s) 100, 368, 625
PleI GAGTC 3 cut(s) 53, 820, 879
PpsI GAGTC 3 cut(s) 53, 820, 879
PsiI TTATAA 1 cut(s) 467
Psp6I CCWGG 1 cut(s) 874
PspGI CCWGG 1 cut(s) 874
PspN4I GGNNCC 1 cut(s) 765
PsuI RGATCY 1 cut(s) 35
RsaI GTAC 3 cut(s) 90, 228, 257
RsaNI GTAC 3 cut(s) 89, 227, 256
RseI CAYNNNNRTG 1 cut(s) 69
SaqAI TTAA 3 cut(s) 32, 80, 837
SatI GCNGC 3 cut(s) 99, 367, 624
Sau3AI GATC 5 cut(s) 35, 106, 166, 421, 555
SchI GAGTC 3 cut(s) 54, 821, 880
ScrFI CCNGG 1 cut(s) 876
SduI GDGCHC 2 cut(s) 66, 766
SetI ASST 8 cut(s) 415, 488, 523, 594, 678, 691, 712, 769
SfaNI GCATC 4 cut(s) 334, 346, 670, 781
SmiMI CAYNNNNRTG 1 cut(s) 69
SmlI CTYRAG 1 cut(s) 880
SmoI CTYRAG 1 cut(s) 880
Sse9I AATT 5 cut(s) 18, 81, 118, 216, 699
SspMI CTAG 1 cut(s) 492
StyD4I CCNGG 1 cut(s) 874
TaaI ACNGT 1 cut(s) 572
TaiI ACGT 1 cut(s) 678
TaqI TCGA 2 cut(s) 713, 867
TasI AATT 5 cut(s) 18, 81, 118, 216, 699
TatI WGTACW 2 cut(s) 88, 255
TauI GCSGC 2 cut(s) 101, 369
TfiI GAWTC 1 cut(s) 636
Tru1I TTAA 3 cut(s) 32, 80, 837
Tru9I TTAA 3 cut(s) 32, 80, 837
TscAI CASTG 1 cut(s) 454
TseI GCWGC 1 cut(s) 623
TspDTI ATGAA 2 cut(s) 125, 501
TspGWI ACGGA 1 cut(s) 356
TspRI CASTG 1 cut(s) 454
VneI GTGCAC 1 cut(s) 62
XapI RAATTY 1 cut(s) 118
XcmI CCANNNNNNNNNTGG 1 cut(s) 384
XspI CTAG 1 cut(s) 492
ZraI GACGTC 1 cut(s) 676
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.