Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0019996.1

Orthogroup ID

OG0007000

Physical Location & Seq

Genomic Coordinates Forward (+)

24540 .. 26568

Gene Structure 2029 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0019996.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1125 bp

atgccagaaattcatttgggaactcacacgttgaaatctcatggactcaaagtggcaaatgtgcacaagtatgactggatgattcttctagttcttggggcgatagatattactttgaatgtcatcgagccttttcaccggtttcttaatgaagatatgatgactgatttgaaatacccctttcagccagacactgtaccaatgtggtgtgttccgatttacgctgtattcttgccggttggtatcttttttgcgttctacttcgtcagaaaggatatttatgacttgcaccatgctatgttgggtcttgcatattcaattttgataactctggttatcaccgactcaatcaaagatgctgttggtcgcccccgtcccgacttcttctatcggtgttttcctgatggacaaggggcatatgatacgtactatggtgatgttttgtgtactggagataaggatgctataagggaaggatataaaagctttcctagtggccattcttcagtgtcatttgcaggcctcggttttcttgcgtggtacttggccgggaagatcaaagcatttgatcgtcgaggccatgctgcaaagctgtgcattgtgatttttccactactttgtgctgctctggtagcagtctcgcgggtggatgactactggcatcattgggcagacgttttcactggtagtcttataggaattgtcatagcatcagtttgttacttgcagtccttcccttttccaaaccaggaaaatgggtgggcacctcatgtatattttcgagtgatggcttcacagctgagtgatgcctcggcgacaaggcctaacaatctcaatacgcgaagaccagacgttgaagctccagcatttgcagcattcaagattcagatgaggaggtcccggaggaggagacgttatcgtaggctaggaagtgtggttattactgaggaaaatgcagcagcaggagggagagggactctaaagttttggaaaattagagtgaccccgaaactgcggctcaaggttacaacatcatcgatggctgttctgaggaggcttaggaatgcttatgtgggaatgatgctttgttttgctggccgtgttgctcagttgaattcatggtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00561 ko00564 ko01110 map00561 map00564 map01110

Pfam Domains

Protein Families

PAP2

Protein Analysis

374

Amino Acids

42.45

Weight (kDa)

9.59

Isoelectric Point (pI)

43.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007000)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18220
fragaria_vesca	FvH4_5g16740 FvH4_5g16740 FvH4_5g16740 FvH4_5g16740 FvH4_5g16740 FvH4_5g16740
malus_domestica	MD06G1221300.v1.1 MD14G1230500.v1.1
prunus_persica	Prupe.5G225500_v2.0.a1 Prupe.5G225500_v2.0.a1 Prupe.5G225500_v2.0.a1
pyrus_communis	pycom14g19180
rosa_chinensis	RchiOBHm_Chr7g0179351
rosa_laevigata	RLG00000005363
rosa_multiflora	Rmu_co8515879.1_g000001 Rmu_sc0000236.1_g000048 Rmu_sc0019996.1_g000007
rosa_roxburghii	Rroxscaffold_3G00274100
rosa_rugosa	Rorug06G0423700
rosa_samantha	Rh7AG023100 Rh7BG022700 Rh7CG024000 Rh7DG023400
rosa_wichuraiana	Rw7G001860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	763
AccII	CGCG	2 cut(s)	643, 841
AciI	CCGC	2 cut(s)	643, 1015
AcoI	YGGCCR	3 cut(s)	496, 546, 1096
AcsI	RAATTY	2 cut(s)	9, 1114
AcuI	CTGAAG	1 cut(s)	489
AfaI	GTAC	4 cut(s)	198, 428, 448, 542
AfiI	CCNNNNNNNGG	1 cut(s)	906
AflIII	ACRYGT	1 cut(s)	27
AgeI	ACCGGT	1 cut(s)	138
AgsI	TTSAA	7 cut(s)	34, 118, 172, 318, 857, 880, 1114
AjnI	CCWGG	1 cut(s)	747
AluBI	AGCT	4 cut(s)	486, 592, 799, 860
AluI	AGCT	4 cut(s)	486, 592, 799, 860
Alw21I	GWGCWC	1 cut(s)	66
Alw26I	GTCTC	2 cut(s)	643, 904
Alw44I	GTGCAC	1 cut(s)	62
AlwNI	CAGNNNCTG	1 cut(s)	194
AoxI	GGCC	6 cut(s)	496, 520, 546, 577, 821, 1096
ApaLI	GTGCAC	1 cut(s)	62
ApeKI	GCWGC	5 cut(s)	584, 623, 872, 956, 959
ApoI	RAATTY	2 cut(s)	9, 1114
AsiGI	ACCGGT	1 cut(s)	138
AspS9I	GGNCC	1 cut(s)	897
AsuC2I	CCSGG	2 cut(s)	550, 901
AsuHPI	GGTGA	3 cut(s)	128, 331, 446
AvaII	GGWCC	1 cut(s)	897
BaeGI	GKGCMC	2 cut(s)	66, 766
BalI	TGGCCA	1 cut(s)	498
BanI	GGYRCC	1 cut(s)	763
BbsI	GAAGAC	1 cut(s)	850
Bbv12I	GWGCWC	1 cut(s)	66
BbvI	GCAGC	5 cut(s)	571, 610, 884, 968, 971
BccI	CCATC	3 cut(s)	398, 781, 1033
BceAI	ACGGC	1 cut(s)	1083
BciT130I	CCWGG	1 cut(s)	749
BcnI	CCSGG	2 cut(s)	550, 901
BcoDI	GTCTC	2 cut(s)	643, 904
BfaI	CTAG	3 cut(s)	89, 492, 926
BisI	GCNGC	6 cut(s)	585, 624, 873, 957, 960, 1016
BlsI	GCNGC	6 cut(s)	586, 625, 874, 958, 961, 1017
Bme1390I	CCNGG	3 cut(s)	550, 749, 901
Bme18I	GGWCC	1 cut(s)	897
BmgT120I	GGNCC	1 cut(s)	897
BmiI	GGNNCC	2 cut(s)	765, 899
BmrFI	CCNGG	3 cut(s)	550, 749, 901
BmsI	GCATC	6 cut(s)	346, 451, 670, 719, 796, 1071
BpiI	GAAGAC	1 cut(s)	850
BplI	GAGNNNNNCTC	2 cut(s)	961, 993
BpmI	CTGGAG	2 cut(s)	471, 846
Bpu10I	CCTNAGC	1 cut(s)	1058
BpuEI	CTTGAG	1 cut(s)	1004
BpuMI	CCSGG	2 cut(s)	550, 901
Bsa29I	ATCGAT	1 cut(s)	1037
BsaAI	YACGTR	1 cut(s)	426
BsaJI	CCNNGG	2 cut(s)	523, 810
BsaWI	WCCGGW	1 cut(s)	138
BsaXI	ACNNNNNCTCC	2 cut(s)	898, 928
Bsc4I	CCNNNNNNNGG	1 cut(s)	906
Bse118I	RCCGGY	2 cut(s)	138, 235
Bse1I	ACTGG	4 cut(s)	80, 454, 662, 688
BseBI	CCWGG	1 cut(s)	749
BseCI	ATCGAT	1 cut(s)	1037
BseDI	CCNNGG	2 cut(s)	523, 810
BseGI	GGATG	3 cut(s)	84, 466, 655
BseLI	CCNNNNNNNGG	1 cut(s)	906
BseMII	CTCAG	4 cut(s)	791, 936, 1040, 1121
BseNI	ACTGG	4 cut(s)	80, 454, 662, 688
BseRI	GAGGAG	4 cut(s)	907, 919, 922, 1066
BseSI	GKGCMC	2 cut(s)	66, 766
BseXI	GCAGC	5 cut(s)	571, 610, 884, 968, 971
Bsh1236I	CGCG	2 cut(s)	643, 841
BshFI	GGCC	6 cut(s)	498, 522, 548, 579, 823, 1098
BshNI	GGYRCC	1 cut(s)	763
BshTI	ACCGGT	1 cut(s)	138
BshVI	ATCGAT	1 cut(s)	1037
BsiHKAI	GWGCWC	1 cut(s)	66
BsiSI	CCGG	4 cut(s)	139, 236, 549, 901
BslFI	GGGAC	3 cut(s)	360, 883, 988
BslI	CCNNNNNNNGG	1 cut(s)	906
BsmAI	GTCTC	2 cut(s)	643, 904
BsmBI	CGTCTC	1 cut(s)	904
BsmFI	GGGAC	3 cut(s)	360, 883, 988
BsmI	GAATGC	2 cut(s)	875, 1069
BsnI	GGCC	6 cut(s)	498, 522, 548, 579, 823, 1098
Bsp1286I	GDGCHC	2 cut(s)	66, 766
Bsp143I	GATC	2 cut(s)	555, 568
BspACI	CCGC	2 cut(s)	643, 1015
BspANI	GGCC	6 cut(s)	498, 522, 548, 579, 823, 1098
BspCNI	CTCAG	4 cut(s)	792, 937, 1041, 1120
BspDI	ATCGAT	1 cut(s)	1037
BspFNI	CGCG	2 cut(s)	643, 841
BspLI	GGNNCC	2 cut(s)	765, 899
BspT107I	GGYRCC	1 cut(s)	763
BsrFI	RCCGGY	2 cut(s)	138, 235
BsrI	ACTGG	4 cut(s)	80, 454, 662, 688
BssAI	RCCGGY	2 cut(s)	138, 235
BssECI	CCNNGG	2 cut(s)	523, 810
BssMI	GATC	2 cut(s)	555, 568
Bst2UI	CCWGG	1 cut(s)	749
Bst4CI	ACNGT	1 cut(s)	196
BstBAI	YACGTR	1 cut(s)	426
BstC8I	GCNNGC	2 cut(s)	520, 1096
BstDEI	CTNAG	5 cut(s)	800, 945, 1049, 1058, 1107
BstF5I	GGATG	3 cut(s)	84, 466, 655
BstFNI	CGCG	2 cut(s)	643, 841
BstKTI	GATC	2 cut(s)	558, 571
BstMAI	GTCTC	2 cut(s)	643, 904
BstMBI	GATC	2 cut(s)	555, 568
BstMWI	GCNNNNNNNGC	2 cut(s)	632, 872
BstNI	CCWGG	1 cut(s)	749
BstSCI	CCNGG	3 cut(s)	548, 747, 899
BstSLI	GKGCMC	2 cut(s)	66, 766
BstSNI	TACGTA	1 cut(s)	426
BstUI	CGCG	2 cut(s)	643, 841
BstV1I	GCAGC	5 cut(s)	571, 610, 884, 968, 971
BstV2I	GAAGAC	1 cut(s)	850
BstXI	CCANNNNNNTGG	1 cut(s)	755
Bsu15I	ATCGAT	1 cut(s)	1037
BsuRI	GGCC	6 cut(s)	498, 522, 548, 579, 823, 1098
BsuTUI	ATCGAT	1 cut(s)	1037
BtsCI	GGATG	3 cut(s)	84, 466, 655
BtsIMutI	CAGTG	3 cut(s)	192, 513, 681
Cac8I	GCNNGC	2 cut(s)	520, 1096
CaiI	CAGNNNCTG	1 cut(s)	194
Cfr10I	RCCGGY	2 cut(s)	138, 235
Cfr13I	GGNCC	1 cut(s)	897
ClaI	ATCGAT	1 cut(s)	1037
Csp6I	GTAC	4 cut(s)	197, 427, 447, 541
CspAI	ACCGGT	1 cut(s)	138
CviAII	CATG	5 cut(s)	41, 293, 581, 770, 1119
CviQI	GTAC	4 cut(s)	197, 427, 447, 541
DdeI	CTNAG	5 cut(s)	800, 945, 1049, 1058, 1107
DpnI	GATC	2 cut(s)	557, 570
DpnII	GATC	2 cut(s)	555, 568
EaeI	YGGCCR	3 cut(s)	496, 546, 1096
Eco105I	TACGTA	1 cut(s)	426
Eco147I	AGGCCT	2 cut(s)	522, 823
Eco47I	GGWCC	1 cut(s)	897
Eco57I	CTGAAG	1 cut(s)	489
EcoO109I	RGGNCCY	1 cut(s)	897
EcoRI	GAATTC	1 cut(s)	1114
EcoRII	CCWGG	1 cut(s)	747
Esp3I	CGTCTC	1 cut(s)	904
FaeI	CATG	5 cut(s)	44, 296, 584, 773, 1122
FaqI	GGGAC	3 cut(s)	360, 883, 988
FatI	CATG	5 cut(s)	40, 292, 580, 769, 1118
FauI	CCCGC	1 cut(s)	636
FauNDI	CATATG	1 cut(s)	418
Fnu4HI	GCNGC	6 cut(s)	585, 624, 873, 957, 960, 1016
FokI	GGATG	3 cut(s)	91, 473, 662
Fsp4HI	GCNGC	6 cut(s)	585, 624, 873, 957, 960, 1016
FspBI	CTAG	3 cut(s)	89, 492, 926
GluI	GCNGC	6 cut(s)	585, 624, 873, 957, 960, 1016
GsuI	CTGGAG	2 cut(s)	471, 846
HaeIII	GGCC	6 cut(s)	498, 522, 548, 579, 823, 1098
HapII	CCGG	4 cut(s)	139, 236, 549, 901
Hin1II	CATG	5 cut(s)	44, 296, 584, 773, 1122
HindIII	AAGCTT	1 cut(s)	484
HinfI	GANTC	5 cut(s)	45, 82, 344, 883, 976
HpaII	CCGG	4 cut(s)	139, 236, 549, 901
HphI	GGTGA	3 cut(s)	128, 331, 446
Hpy166II	GTNNAC	2 cut(s)	64, 447
Hpy188I	TCNGA	4 cut(s)	216, 269, 888, 1050
Hpy188III	TCNNGA	3 cut(s)	377, 401, 880
Hpy8I	GTNNAC	2 cut(s)	64, 447
Hpy99I	CGWCG	1 cut(s)	576
HpyAV	CCTTC	2 cut(s)	467, 742
HpyCH4III	ACNGT	1 cut(s)	196
HpyCH4IV	ACGT	5 cut(s)	29, 425, 675, 852, 913
HpyCH4V	TGCA	9 cut(s)	64, 289, 311, 518, 587, 597, 727, 872, 956
HpyF10VI	GCNNNNNNNGC	2 cut(s)	632, 872
HpyF3I	CTNAG	5 cut(s)	800, 945, 1049, 1058, 1107
HpySE526I	ACGT	5 cut(s)	29, 425, 675, 852, 913
Hsp92II	CATG	5 cut(s)	44, 296, 584, 773, 1122
Kzo9I	GATC	2 cut(s)	555, 568
LmnI	GCTCC	1 cut(s)	865
Lsp1109I	GCAGC	5 cut(s)	571, 610, 884, 968, 971
LweI	GCATC	6 cut(s)	346, 451, 670, 719, 796, 1071
MaeI	CTAG	3 cut(s)	89, 492, 926
MaeII	ACGT	5 cut(s)	29, 425, 675, 852, 913
MaeIII	GTNAC	3 cut(s)	719, 1000, 1024
MalI	GATC	2 cut(s)	557, 570
MboI	GATC	2 cut(s)	555, 568
MboII	GAAGA	6 cut(s)	77, 164, 376, 495, 565, 855
MhlI	GDGCHC	2 cut(s)	66, 766
MlsI	TGGCCA	1 cut(s)	498
MluCI	AATT	5 cut(s)	9, 318, 699, 993, 1114
MluNI	TGGCCA	1 cut(s)	498
MlyI	GAGTC	3 cut(s)	39, 338, 970
Mox20I	TGGCCA	1 cut(s)	498
MscI	TGGCCA	1 cut(s)	498
MseI	TTAA	1 cut(s)	147
MslI	CAYNNNNRTG	1 cut(s)	69
Msp20I	TGGCCA	1 cut(s)	498
MspA1I	CMGCKG	1 cut(s)	799
MspI	CCGG	4 cut(s)	139, 236, 549, 901
MspR9I	CCNGG	3 cut(s)	550, 749, 901
Mva1269I	GAATGC	2 cut(s)	875, 1069
MvaI	CCWGG	1 cut(s)	749
MvnI	CGCG	2 cut(s)	643, 841
MwoI	GCNNNNNNNGC	2 cut(s)	632, 872
NciI	CCSGG	2 cut(s)	550, 901
NdeI	CATATG	1 cut(s)	418
NdeII	GATC	2 cut(s)	555, 568
NlaIII	CATG	5 cut(s)	44, 296, 584, 773, 1122
NlaIV	GGNNCC	2 cut(s)	765, 899
NmeAIII	GCCGAG	1 cut(s)	791
NmuCI	GTSAC	1 cut(s)	1000
PceI	AGGCCT	2 cut(s)	522, 823
PctI	GAATGC	2 cut(s)	875, 1069
PfeI	GAWTC	2 cut(s)	82, 883
PfoI	TCCNGGA	1 cut(s)	899
PinAI	ACCGGT	1 cut(s)	138
PkrI	GCNGC	6 cut(s)	586, 625, 874, 958, 961, 1017
PleI	GAGTC	3 cut(s)	39, 338, 970
PpsI	GAGTC	3 cut(s)	39, 338, 970
Ppu21I	YACGTR	1 cut(s)	426
PpuMI	RGGWCCY	1 cut(s)	897
Psp5II	RGGWCCY	1 cut(s)	897
Psp6I	CCWGG	1 cut(s)	747
PspGI	CCWGG	1 cut(s)	747
PspN4I	GGNNCC	2 cut(s)	765, 899
PspPI	GGNCC	1 cut(s)	897
PspPPI	RGGWCCY	1 cut(s)	897
PstNI	CAGNNNCTG	1 cut(s)	194
PvuII	CAGCTG	1 cut(s)	799
RsaI	GTAC	4 cut(s)	198, 428, 448, 542
RsaNI	GTAC	4 cut(s)	197, 427, 447, 541
RseI	CAYNNNNRTG	1 cut(s)	69
SaqAI	TTAA	1 cut(s)	147
SatI	GCNGC	6 cut(s)	585, 624, 873, 957, 960, 1016
Sau3AI	GATC	2 cut(s)	555, 568
Sau96I	GGNCC	1 cut(s)	897
SchI	GAGTC	3 cut(s)	39, 338, 970
ScrFI	CCNGG	3 cut(s)	550, 749, 901
SduI	GDGCHC	2 cut(s)	66, 766
SfaNI	GCATC	6 cut(s)	346, 451, 670, 719, 796, 1071
SinI	GGWCC	1 cut(s)	897
SmiMI	CAYNNNNRTG	1 cut(s)	69
SmlI	CTYRAG	1 cut(s)	1019
SmoI	CTYRAG	1 cut(s)	1019
SnaBI	TACGTA	1 cut(s)	426
Sse9I	AATT	5 cut(s)	9, 318, 699, 993, 1114
SseBI	AGGCCT	2 cut(s)	522, 823
SsiI	CCGC	2 cut(s)	643, 1015
SspMI	CTAG	3 cut(s)	89, 492, 926
StuI	AGGCCT	2 cut(s)	522, 823
StyD4I	CCNGG	3 cut(s)	548, 747, 899
TaaI	ACNGT	1 cut(s)	196
TaiI	ACGT	5 cut(s)	32, 428, 678, 855, 916
TaqI	TCGA	4 cut(s)	126, 574, 781, 1037
TasI	AATT	5 cut(s)	9, 318, 699, 993, 1114
TatI	WGTACW	1 cut(s)	446
TauI	GCSGC	1 cut(s)	1018
TfiI	GAWTC	2 cut(s)	82, 883
Tru1I	TTAA	1 cut(s)	147
Tru9I	TTAA	1 cut(s)	147
TscAI	CASTG	3 cut(s)	199, 513, 688
TseFI	GTSAC	1 cut(s)	1000
TseI	GCWGC	5 cut(s)	584, 623, 872, 956, 959
Tsp45I	GTSAC	1 cut(s)	1000
TspDTI	ATGAA	2 cut(s)	165, 1107
TspRI	CASTG	3 cut(s)	199, 513, 688
VneI	GTGCAC	1 cut(s)	62
VpaK11BI	GGWCC	1 cut(s)	897
XapI	RAATTY	2 cut(s)	9, 1114
XspI	CTAG	3 cut(s)	89, 492, 926

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.