AT3G18260

Reticulon-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0012352
Physical Location & Seq
Reverse (-)
6260135 .. 6261606
1472 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G18260.1

Sequence Viewer

Length: 678 bp
ATGCCAATATTTACGGGATCGTCCTCCGATTCTGAAGACGAAAGAACGATCCATAAAACAACTAAGCTCTTCACTCGTCAACGATCTATTCACTCTATATTTGGAGGTGGTAAAGTTGCGGATATTCTGTTATGGAGAGAGCCGAAAATAGCAGCAACATTGGTGATAGGAGTGAGCATCTTATGGTTCTTAATGGAAGTAGTGGAATACAATTTCATAACCCTAATTTGTCATGCTTCCATGACCTCCATGCTTTTTTTCTTCATTTGGTCTACTGCTTCTGATTTTCTCAATTGGGAAAGACCACTAATACCAGAAGTTGTACTAGACGAATCTTCTTTCAAACAATTAGCAAGAAGCTTCCATGTTAGATTCAACCAAATCCTCACAAAGCTTCTTGACGTTGCTTGTGGAAGAGATCCTCCTCTCTTTTTTCTCACAACGATCTCGCTTTATATCGTATCCATCATCGGGACATATTTCAACTTTGTGAATCTTCTCTTCATAGGGTTTGTAAGCATGCAAACCTTACCGGTTATGTATGAGATGTACGAGGACGACGTGGATACAGCGGCGGGTAAGTTGATGAGGAAGATGAAGAAGCTGTACAAGAAAGTCGATACGAATGTTCTTAGTAAAATCCCAAGAGGAACTGTCAAAAACAAGAAATTTACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Reticulon

Protein Analysis

225

Amino Acids

25.88

Weight (kDa)

9.17

Isoelectric Point (pI)

30.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Reticulon PF02453 39 - 194 3.9e-48 Reticulon
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012352)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G18260
fragaria_vesca FvH4_5g16680 FvH4_5g16680
malus_domestica MD06G1220200.v1.1 MD14G1229700.v1.1
prunus_persica Prupe.5G224500_v2.0.a1
pyrus_communis pycom06g19640 pycom14g19120
rosa_chinensis RchiOBHm_Chr7g0179441
rosa_laevigata RLG00000005356
rosa_multiflora Rmu_co8409275.1_g000001
rosa_roxburghii Rroxscaffold_3G00274020
rosa_rugosa Rorug06G0424200 Rorug06G0424200
rosa_samantha Rh7AG023800 Rh7BG023400 Rh7CG024800 Rh7DG024300
rosa_wichuraiana Rw7G001930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 272
AciI CCGC 3 cut(s) 119, 572, 575
AclWI GGATC 3 cut(s) 25, 43, 413
AcsI RAATTY 1 cut(s) 668
AcuI CTGAAG 1 cut(s) 54
AfaI GTAC 3 cut(s) 324, 551, 608
AfiI CCNNNNNNNGG 1 cut(s) 471
AgeI ACCGGT 1 cut(s) 532
AgsI TTSAA 3 cut(s) 343, 376, 484
AjiI CACGTC 1 cut(s) 562
AluBI AGCT 4 cut(s) 67, 360, 394, 604
AluI AGCT 4 cut(s) 67, 360, 394, 604
AlwI GGATC 3 cut(s) 25, 43, 413
ApeKI GCWGC 1 cut(s) 152
ApoI RAATTY 1 cut(s) 668
AsiGI ACCGGT 1 cut(s) 532
AsuHPI GGTGA 1 cut(s) 175
BaeI ACNNNNGTAYC 2 cut(s) 612, 645
BarI GAAGNNNNNNTAC 2 cut(s) 590, 622
BbsI GAAGAC 1 cut(s) 42
BbvI GCAGC 1 cut(s) 164
BccI CCATC 1 cut(s) 473
BciVI GTATCC 2 cut(s) 472, 559
BfaI CTAG 1 cut(s) 326
BfuI GTATCC 2 cut(s) 472, 559
BisI GCNGC 2 cut(s) 153, 573
BlsI GCNGC 2 cut(s) 154, 574
BmgBI CACGTC 1 cut(s) 562
BmsI GCATC 1 cut(s) 186
BpiI GAAGAC 1 cut(s) 42
BsaWI WCCGGW 1 cut(s) 532
Bsc4I CCNNNNNNNGG 1 cut(s) 471
Bse118I RCCGGY 1 cut(s) 532
BseLI CCNNNNNNNGG 1 cut(s) 471
BseRI GAGGAG 1 cut(s) 414
BseXI GCAGC 1 cut(s) 164
BshTI ACCGGT 1 cut(s) 532
BsiSI CCGG 1 cut(s) 533
BslFI GGGAC 1 cut(s) 487
BslI CCNNNNNNNGG 1 cut(s) 471
BsmFI GGGAC 1 cut(s) 487
Bsp1407I TGTACA 1 cut(s) 606
Bsp143I GATC 5 cut(s) 17, 48, 83, 418, 444
BspACI CCGC 3 cut(s) 119, 572, 575
BspPI GGATC 3 cut(s) 25, 43, 413
BspQI GCTCTTC 1 cut(s) 74
BsrFI RCCGGY 1 cut(s) 532
BsrGI TGTACA 1 cut(s) 606
BssAI RCCGGY 1 cut(s) 532
BssMI GATC 5 cut(s) 17, 48, 83, 418, 444
Bst4CI ACNGT 1 cut(s) 655
Bst6I CTCTTC 3 cut(s) 74, 409, 506
BstAUI TGTACA 1 cut(s) 606
BstC8I GCNNGC 1 cut(s) 521
BstDEI CTNAG 2 cut(s) 63, 632
BstKTI GATC 5 cut(s) 20, 51, 86, 421, 447
BstMBI GATC 5 cut(s) 17, 48, 83, 418, 444
BstNSI RCATGY 1 cut(s) 523
BstV1I GCAGC 1 cut(s) 164
BstV2I GAAGAC 1 cut(s) 42
BstX2I RGATCY 1 cut(s) 418
BstYI RGATCY 1 cut(s) 418
BsuI GTATCC 2 cut(s) 472, 559
BtrI CACGTC 1 cut(s) 562
Cac8I GCNNGC 1 cut(s) 521
Cfr10I RCCGGY 1 cut(s) 532
Csp6I GTAC 3 cut(s) 323, 550, 607
CspAI ACCGGT 1 cut(s) 532
CviAII CATG 5 cut(s) 233, 241, 250, 365, 520
CviJI RGCY 5 cut(s) 67, 142, 360, 394, 604
CviKI_1 RGCY 5 cut(s) 67, 142, 360, 394, 604
CviQI GTAC 3 cut(s) 323, 550, 607
DdeI CTNAG 2 cut(s) 63, 632
DpnI GATC 5 cut(s) 19, 50, 85, 420, 446
DpnII GATC 5 cut(s) 17, 48, 83, 418, 444
Eam1104I CTCTTC 3 cut(s) 74, 409, 506
EarI CTCTTC 3 cut(s) 74, 409, 506
Eco57I CTGAAG 1 cut(s) 54
FaeI CATG 5 cut(s) 236, 244, 253, 368, 523
FaqI GGGAC 1 cut(s) 487
FatI CATG 5 cut(s) 232, 240, 249, 364, 519
FauI CCCGC 1 cut(s) 568
FblI GTMKAC 1 cut(s) 272
Fnu4HI GCNGC 2 cut(s) 153, 573
Fsp4HI GCNGC 2 cut(s) 153, 573
FspBI CTAG 1 cut(s) 326
GluI GCNGC 2 cut(s) 153, 573
HapII CCGG 1 cut(s) 533
Hin1II CATG 5 cut(s) 236, 244, 253, 368, 523
HincII GTYRAC 1 cut(s) 80
HindII GTYRAC 1 cut(s) 80
HindIII AAGCTT 2 cut(s) 358, 392
HinfI GANTC 4 cut(s) 29, 332, 372, 493
HpaII CCGG 1 cut(s) 533
HphI GGTGA 1 cut(s) 175
Hpy166II GTNNAC 2 cut(s) 80, 273
Hpy188I TCNGA 3 cut(s) 28, 34, 283
Hpy188III TCNNGA 2 cut(s) 398, 472
Hpy8I GTNNAC 2 cut(s) 80, 273
Hpy99I CGWCG 1 cut(s) 563
HpyCH4III ACNGT 1 cut(s) 655
HpyCH4IV ACGT 2 cut(s) 402, 561
HpyCH4V TGCA 1 cut(s) 523
HpyF3I CTNAG 2 cut(s) 63, 632
HpySE526I ACGT 2 cut(s) 402, 561
Hsp92II CATG 5 cut(s) 236, 244, 253, 368, 523
Kzo9I GATC 5 cut(s) 17, 48, 83, 418, 444
LguI GCTCTTC 1 cut(s) 74
LpnPI CCDG 2 cut(s) 327, 546
Lsp1109I GCAGC 1 cut(s) 164
LweI GCATC 1 cut(s) 186
MaeI CTAG 1 cut(s) 326
MaeII ACGT 2 cut(s) 402, 561
MalI GATC 5 cut(s) 19, 50, 85, 420, 446
MboI GATC 5 cut(s) 17, 48, 83, 418, 444
MboII GAAGA 9 cut(s) 47, 61, 253, 327, 426, 488, 493, 604, 610
MfeI CAATTG 1 cut(s) 292
MflI RGATCY 1 cut(s) 418
MluCI AATT 5 cut(s) 211, 225, 292, 347, 668
MnlI CCTC 9 cut(s) 34, 98, 256, 395, 432, 435, 547, 582, 641
MseI TTAA 2 cut(s) 191, 676
MspA1I CMGCKG 1 cut(s) 572
MspI CCGG 1 cut(s) 533
MunI CAATTG 1 cut(s) 292
NdeII GATC 5 cut(s) 17, 48, 83, 418, 444
NlaIII CATG 5 cut(s) 236, 244, 253, 368, 523
NspI RCATGY 1 cut(s) 523
PaeI GCATGC 1 cut(s) 523
PciSI GCTCTTC 1 cut(s) 74
PcsI WCGNNNNNNNCGW 1 cut(s) 558
PfeI GAWTC 4 cut(s) 29, 332, 372, 493
PinAI ACCGGT 1 cut(s) 532
PkrI GCNGC 2 cut(s) 154, 574
PsuI RGATCY 1 cut(s) 418
RsaI GTAC 3 cut(s) 324, 551, 608
RsaNI GTAC 3 cut(s) 323, 550, 607
SapI GCTCTTC 1 cut(s) 74
SaqAI TTAA 2 cut(s) 191, 676
SatI GCNGC 2 cut(s) 153, 573
Sau3AI GATC 5 cut(s) 17, 48, 83, 418, 444
SetI ASST 9 cut(s) 69, 109, 248, 362, 396, 405, 530, 564, 606
SfaNI GCATC 1 cut(s) 186
SphI GCATGC 1 cut(s) 523
Sse9I AATT 5 cut(s) 211, 225, 292, 347, 668
SsiI CCGC 3 cut(s) 119, 572, 575
SspI AATATT 1 cut(s) 9
SspMI CTAG 1 cut(s) 326
TaaI ACNGT 1 cut(s) 655
TaiI ACGT 2 cut(s) 405, 564
TaqI TCGA 1 cut(s) 618
TasI AATT 5 cut(s) 211, 225, 292, 347, 668
TatI WGTACW 2 cut(s) 322, 606
TauI GCSGC 1 cut(s) 575
TfiI GAWTC 4 cut(s) 29, 332, 372, 493
Tru1I TTAA 2 cut(s) 191, 676
Tru9I TTAA 2 cut(s) 191, 676
TseI GCWGC 1 cut(s) 152
TspDTI ATGAA 4 cut(s) 205, 253, 493, 611
XapI RAATTY 1 cut(s) 668
XceI RCATGY 1 cut(s) 523
XmiI GTMKAC 1 cut(s) 272
XspI CTAG 1 cut(s) 326
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.