Rh7CG024800

Reticulon-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0012352
Physical Location & Seq
Reverse (-)
1742446 .. 1743686
1241 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG024800.1

Sequence Viewer

Length: 648 bp
ATGCCGGGATTAGTATACTCGTCGGATTCTGATGACATCTATGGAACCAGCCACTCAAGGCTCTTTGGACGAGAGAGGCCAATTCATCAGGTTCTTGGAGGTGGCAGAGTTGCGGATGTGTTGTTGTGGAGGAACAGAAATGTATCGGCTGCGCTTTTGGGTGTGATGACCGTGATATGGTTTCTTTTCGAGGTAGTTGAGTACAATTTCGTCACCCTCCTCTGTCACGCCTCCATTACCACTATGCTTGTTATCTTCATTTGGCGCATGGTTGCAGAAATCTTCGGATTGACACCTCCTAGAATACCTGAAATTATATTGGATGACTCTACATTCAGAGATGTAGCTTCCACAGTCCATAAAAAGTTCAACCGTTTCTTGTCAAAGCTCATTGACAGTGCTTGTGGAAAAGACCTACCATTCTTCATCTTGGTAATTTCAAGTGTGAACAGTGAACTAATTATGTGCAATTTAGGCTTATATTATCTATACTTAATAACTTCCTTCATTGTCGATGATGTTCAGGCAATCGTTTCTCTATACATTTTGTCTGTGATTGGAACCTATTTCAGCTTTCTGAATCTTCTTTACTTGGGTAAGCTAGGAAGTGTTATTTTTAATCAAGTTCATCTTAATACTTCCATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Reticulon

Protein Analysis

215

Amino Acids

24.26

Weight (kDa)

6.18

Isoelectric Point (pI)

28.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Reticulon PF02453 37 - 150 7.9e-30 Reticulon
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012352)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G18260
fragaria_vesca FvH4_5g16680 FvH4_5g16680
malus_domestica MD06G1220200.v1.1 MD14G1229700.v1.1
prunus_persica Prupe.5G224500_v2.0.a1
pyrus_communis pycom06g19640 pycom14g19120
rosa_chinensis RchiOBHm_Chr7g0179441
rosa_laevigata RLG00000005356
rosa_multiflora Rmu_co8409275.1_g000001
rosa_roxburghii Rroxscaffold_3G00274020
rosa_rugosa Rorug06G0424200 Rorug06G0424200
rosa_samantha Rh7AG023800 Rh7BG023400 Rh7CG024800 Rh7DG024300
rosa_wichuraiana Rw7G001930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 15
AciI CCGC 1 cut(s) 113
AfaI GTAC 1 cut(s) 203
AfiI CCNNNNNNNGG 1 cut(s) 177
AgsI TTSAA 2 cut(s) 370, 441
AluBI AGCT 4 cut(s) 347, 388, 573, 601
AluI AGCT 4 cut(s) 347, 388, 573, 601
AoxI GGCC 1 cut(s) 77
ApeKI GCWGC 1 cut(s) 149
AspLEI GCGC 2 cut(s) 154, 267
AsuC2I CCSGG 1 cut(s) 6
AsuHPI GGTGA 1 cut(s) 205
BbvI GCAGC 1 cut(s) 136
BcnI CCSGG 1 cut(s) 6
BfaI CTAG 2 cut(s) 300, 602
BisI GCNGC 1 cut(s) 150
BlsI GCNGC 1 cut(s) 151
Bme1390I CCNGG 1 cut(s) 6
BmiI GGNNCC 2 cut(s) 46, 562
BmrFI CCNGG 1 cut(s) 6
BpuEI CTTGAG 1 cut(s) 40
BpuMI CCSGG 1 cut(s) 6
Bsc4I CCNNNNNNNGG 1 cut(s) 177
BseGI GGATG 2 cut(s) 121, 328
BseLI CCNNNNNNNGG 1 cut(s) 177
BseRI GAGGAG 1 cut(s) 209
BseXI GCAGC 1 cut(s) 136
BshFI GGCC 1 cut(s) 79
BsiSI CCGG 1 cut(s) 5
BslI CCNNNNNNNGG 1 cut(s) 177
BsnI GGCC 1 cut(s) 79
BspACI CCGC 1 cut(s) 113
BspANI GGCC 1 cut(s) 79
BspLI GGNNCC 2 cut(s) 46, 562
BssNAI GTATAC 1 cut(s) 16
Bst1107I GTATAC 1 cut(s) 16
Bst4CI ACNGT 5 cut(s) 172, 355, 374, 398, 452
BstF5I GGATG 2 cut(s) 121, 328
BstHHI GCGC 2 cut(s) 154, 267
BstMWI GCNNNNNNNGC 1 cut(s) 474
BstSCI CCNGG 1 cut(s) 4
BstV1I GCAGC 1 cut(s) 136
BstZ17I GTATAC 1 cut(s) 16
BsuRI GGCC 1 cut(s) 79
BtsCI GGATG 2 cut(s) 121, 328
BtsIMutI CAGTG 2 cut(s) 403, 457
CfoI GCGC 2 cut(s) 154, 267
Csp6I GTAC 1 cut(s) 202
CspCI CAANNNNNGTGG 2 cut(s) 229, 264
CviAII CATG 1 cut(s) 268
CviJI RGCY 9 cut(s) 51, 61, 79, 149, 347, 388, 477, 573, 601
CviKI_1 RGCY 9 cut(s) 51, 61, 79, 149, 347, 388, 477, 573, 601
CviQI GTAC 1 cut(s) 202
FaeI CATG 1 cut(s) 271
FalI AAGNNNNNCTT 2 cut(s) 615, 647
FatI CATG 1 cut(s) 267
FblI GTMKAC 1 cut(s) 15
Fnu4HI GCNGC 1 cut(s) 150
FokI GGATG 2 cut(s) 128, 335
Fsp4HI GCNGC 1 cut(s) 150
FspBI CTAG 2 cut(s) 300, 602
GlaI GCGC 2 cut(s) 153, 266
GluI GCNGC 1 cut(s) 150
HaeIII GGCC 1 cut(s) 79
HapII CCGG 1 cut(s) 5
HhaI GCGC 2 cut(s) 154, 267
Hin1II CATG 1 cut(s) 271
Hin6I GCGC 2 cut(s) 152, 265
HinP1I GCGC 2 cut(s) 152, 265
HinfI GANTC 3 cut(s) 26, 326, 580
HpaII CCGG 1 cut(s) 5
HphI GGTGA 1 cut(s) 205
Hpy166II GTNNAC 3 cut(s) 16, 448, 455
Hpy188I TCNGA 5 cut(s) 25, 31, 287, 338, 579
Hpy8I GTNNAC 3 cut(s) 16, 448, 455
Hpy99I CGWCG 1 cut(s) 25
HpyAV CCTTC 1 cut(s) 514
HpyCH4III ACNGT 5 cut(s) 172, 355, 374, 398, 452
HpyCH4V TGCA 2 cut(s) 275, 468
HpyF10VI GCNNNNNNNGC 1 cut(s) 474
Hsp92II CATG 1 cut(s) 271
HspAI GCGC 2 cut(s) 152, 265
LpnPI CCDG 5 cut(s) 18, 61, 74, 321, 509
Lsp1109I GCAGC 1 cut(s) 136
MaeI CTAG 2 cut(s) 300, 602
MaeIII GTNAC 2 cut(s) 211, 224
MboII GAAGA 4 cut(s) 247, 274, 415, 575
MluCI AATT 6 cut(s) 81, 205, 312, 435, 459, 469
MlyI GAGTC 1 cut(s) 320
MnlI CCTC 8 cut(s) 69, 92, 123, 184, 227, 230, 241, 306
MseI TTAA 4 cut(s) 494, 618, 633, 646
MspI CCGG 1 cut(s) 5
MspR9I CCNGG 1 cut(s) 6
MwoI GCNNNNNNNGC 1 cut(s) 474
NciI CCSGG 1 cut(s) 6
NlaIII CATG 1 cut(s) 271
NlaIV GGNNCC 2 cut(s) 46, 562
NmuCI GTSAC 2 cut(s) 211, 224
PfeI GAWTC 2 cut(s) 26, 580
PkrI GCNGC 1 cut(s) 151
PleI GAGTC 1 cut(s) 320
PpsI GAGTC 1 cut(s) 320
PspN4I GGNNCC 2 cut(s) 46, 562
RsaI GTAC 1 cut(s) 203
RsaNI GTAC 1 cut(s) 202
SaqAI TTAA 4 cut(s) 494, 618, 633, 646
SatI GCNGC 1 cut(s) 150
SchI GAGTC 1 cut(s) 320
ScrFI CCNGG 1 cut(s) 6
SmlI CTYRAG 1 cut(s) 55
SmoI CTYRAG 1 cut(s) 55
Sse9I AATT 6 cut(s) 81, 205, 312, 435, 459, 469
SsiI CCGC 1 cut(s) 113
SspMI CTAG 2 cut(s) 300, 602
StyD4I CCNGG 1 cut(s) 4
TaaI ACNGT 5 cut(s) 172, 355, 374, 398, 452
TaqI TCGA 2 cut(s) 189, 513
TasI AATT 6 cut(s) 81, 205, 312, 435, 459, 469
TatI WGTACW 1 cut(s) 201
TfiI GAWTC 2 cut(s) 26, 580
Tru1I TTAA 4 cut(s) 494, 618, 633, 646
Tru9I TTAA 4 cut(s) 494, 618, 633, 646
TscAI CASTG 2 cut(s) 403, 457
TseFI GTSAC 2 cut(s) 211, 224
TseI GCWGC 1 cut(s) 149
Tsp45I GTSAC 2 cut(s) 211, 224
TspDTI ATGAA 5 cut(s) 74, 247, 415, 496, 617
TspRI CASTG 2 cut(s) 403, 457
XmiI GTMKAC 1 cut(s) 15
XspI CTAG 2 cut(s) 300, 602
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.