Prupe.5G224500_v2.0.a1

Reticulon-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0012352
Physical Location & Seq
Forward (+)
17391561 .. 17393114
1554 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G224500.1

Sequence Viewer

Length: 669 bp
ATGCCGGGGGTATATTCATCCGATTCTGATGACAATATTGGCGCAAGCCATGGGGCAAAGCTCTTTGGACGTGAAAGGCCAATTCATCATGTTCTTGGAGGTGGAAAAGTTGCGGATGTGTTATTGTGGAGGAACAGAAATGTATCAGCTGCGCTTTTGATTGGGATGACGGTGATATGGTTTCTTTTCGAGGTAGTCGAGTACAATTTTGTGACCCTCGTCTGCCACCTCTCCATTACCACATTGCTTGTAATCTTCATATGGCGCACGGCTGCAGAATTGTTCAGATTGACACCTCCTACCATACCTGATATAATATTACATGAATCTACATTCAAAGAGTTGGCTTCCACAGTCCACAAAAGATGCAACCATTTCTTGTCAAAGCTTCTTGACAGTGCATGTGGAAGAGACCTACCATTCTTCTTCTTGGCAATTATTTCTCTCTATATTTTGTCTGTGATTGGAACCTATTTCAGCTTTCTGAATCTTGTTTACTTGGGGTTCCTCGCCCTGGAAACACTGCCATTTGTGTATGAGCGATTTGAGGAGGACGTTGATCGCCTAGCTGGAAAAGTTAGCAGAGAGATAAAGAGATCGTACAGAAAGTTTGATTCTCAGTTTCTCAACAAAATTCCAAGAGGCCCAGTGAAAGAGAAAACCAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Reticulon

Protein Analysis

223

Amino Acids

25.34

Weight (kDa)

8.97

Isoelectric Point (pI)

34.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012352)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G18260
fragaria_vesca FvH4_5g16680 FvH4_5g16680
malus_domestica MD06G1220200.v1.1 MD14G1229700.v1.1
prunus_persica Prupe.5G224500_v2.0.a1
pyrus_communis pycom06g19640 pycom14g19120
rosa_chinensis RchiOBHm_Chr7g0179441
rosa_laevigata RLG00000005356
rosa_multiflora Rmu_co8409275.1_g000001
rosa_roxburghii Rroxscaffold_3G00274020
rosa_rugosa Rorug06G0424200 Rorug06G0424200
rosa_samantha Rh7AG023800 Rh7BG023400 Rh7CG024800 Rh7DG024300
rosa_wichuraiana Rw7G001930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 113
AcsI RAATTY 1 cut(s) 633
AfaI GTAC 2 cut(s) 203, 602
AfiI CCNNNNNNNGG 1 cut(s) 514
AgsI TTSAA 1 cut(s) 337
AjiI CACGTC 1 cut(s) 71
AjnI CCWGG 1 cut(s) 513
AluBI AGCT 5 cut(s) 61, 149, 388, 480, 569
AluI AGCT 5 cut(s) 61, 149, 388, 480, 569
Alw26I GTCTC 1 cut(s) 405
AoxI GGCC 2 cut(s) 77, 643
ApeKI GCWGC 2 cut(s) 149, 272
ApoI RAATTY 1 cut(s) 633
AspLEI GCGC 3 cut(s) 44, 154, 267
AspS9I GGNCC 1 cut(s) 644
AsuC2I CCSGG 1 cut(s) 6
AsuHPI GGTGA 1 cut(s) 184
BbvI GCAGC 2 cut(s) 136, 259
BceAI ACGGC 1 cut(s) 285
BciT130I CCWGG 1 cut(s) 515
BcnI CCSGG 1 cut(s) 6
BcoDI GTCTC 1 cut(s) 405
BfaI CTAG 1 cut(s) 566
BfmI CTRYAG 1 cut(s) 273
BisI GCNGC 2 cut(s) 150, 273
BlsI GCNGC 2 cut(s) 151, 274
Bme1390I CCNGG 2 cut(s) 6, 515
BmgBI CACGTC 1 cut(s) 71
BmgT120I GGNCC 1 cut(s) 644
BmiI GGNNCC 2 cut(s) 469, 506
BmrFI CCNGG 2 cut(s) 6, 515
BmrI ACTGGG 1 cut(s) 641
BmsI GCATC 1 cut(s) 356
BmuI ACTGGG 1 cut(s) 641
BoxI GACNNNNGTC 1 cut(s) 218
BpuMI CCSGG 1 cut(s) 6
BsaI GGTCTC 1 cut(s) 405
BsaJI CCNNGG 3 cut(s) 5, 49, 513
Bsc4I CCNNNNNNNGG 1 cut(s) 514
Bse1I ACTGG 1 cut(s) 647
Bse3DI GCAATG 1 cut(s) 242
BseBI CCWGG 1 cut(s) 515
BseDI CCNNGG 3 cut(s) 5, 49, 513
BseGI GGATG 3 cut(s) 17, 121, 171
BseLI CCNNNNNNNGG 1 cut(s) 514
BseMI GCAATG 1 cut(s) 242
BseMII CTCAG 1 cut(s) 632
BseNI ACTGG 1 cut(s) 647
BseRI GAGGAG 1 cut(s) 563
BseXI GCAGC 2 cut(s) 136, 259
BshFI GGCC 2 cut(s) 79, 645
BsiSI CCGG 1 cut(s) 5
BslI CCNNNNNNNGG 1 cut(s) 514
BsmAI GTCTC 1 cut(s) 405
BsnI GGCC 2 cut(s) 79, 645
Bso31I GGTCTC 1 cut(s) 405
Bsp143I GATC 2 cut(s) 559, 596
Bsp19I CCATGG 1 cut(s) 49
BspACI CCGC 1 cut(s) 113
BspANI GGCC 2 cut(s) 79, 645
BspCNI CTCAG 1 cut(s) 631
BspLI GGNNCC 2 cut(s) 469, 506
BspMAI CTGCAG 1 cut(s) 277
BspTNI GGTCTC 1 cut(s) 405
BsrDI GCAATG 1 cut(s) 242
BsrI ACTGG 1 cut(s) 647
BssECI CCNNGG 3 cut(s) 5, 49, 513
BssMI GATC 2 cut(s) 559, 596
BssT1I CCWWGG 1 cut(s) 49
Bst2UI CCWGG 1 cut(s) 515
Bst4CI ACNGT 3 cut(s) 172, 355, 398
Bst6I CTCTTC 1 cut(s) 403
BstC8I GCNNGC 1 cut(s) 46
BstDEI CTNAG 1 cut(s) 618
BstDSI CCRYGG 1 cut(s) 49
BstF5I GGATG 3 cut(s) 17, 121, 171
BstHHI GCGC 3 cut(s) 44, 154, 267
BstKTI GATC 2 cut(s) 562, 599
BstMAI GTCTC 1 cut(s) 405
BstMBI GATC 2 cut(s) 559, 596
BstNI CCWGG 1 cut(s) 515
BstNSI RCATGY 1 cut(s) 405
BstPAI GACNNNNGTC 1 cut(s) 218
BstSCI CCNGG 2 cut(s) 4, 513
BstSFI CTRYAG 1 cut(s) 273
BstV1I GCAGC 2 cut(s) 136, 259
BsuRI GGCC 2 cut(s) 79, 645
BtgI CCRYGG 1 cut(s) 49
BtrI CACGTC 1 cut(s) 71
BtsCI GGATG 3 cut(s) 17, 121, 171
BtsI GCAGTG 1 cut(s) 521
BtsIMutI CAGTG 3 cut(s) 403, 521, 654
Cac8I GCNNGC 1 cut(s) 46
CfoI GCGC 3 cut(s) 44, 154, 267
Cfr13I GGNCC 1 cut(s) 644
Csp6I GTAC 2 cut(s) 202, 601
CspCI CAANNNNNGTGG 2 cut(s) 229, 264
CviAII CATG 4 cut(s) 50, 89, 323, 402
CviQI GTAC 2 cut(s) 202, 601
DdeI CTNAG 1 cut(s) 618
DpnI GATC 2 cut(s) 561, 598
DpnII GATC 2 cut(s) 559, 596
Eam1104I CTCTTC 1 cut(s) 403
EarI CTCTTC 1 cut(s) 403
Eco130I CCWWGG 1 cut(s) 49
Eco31I GGTCTC 1 cut(s) 405
EcoRII CCWGG 1 cut(s) 513
EcoT14I CCWWGG 1 cut(s) 49
ErhI CCWWGG 1 cut(s) 49
FaeI CATG 4 cut(s) 53, 92, 326, 405
FatI CATG 4 cut(s) 49, 88, 322, 401
FauNDI CATATG 1 cut(s) 260
Fnu4HI GCNGC 2 cut(s) 150, 273
FokI GGATG 3 cut(s) 4, 128, 178
Fsp4HI GCNGC 2 cut(s) 150, 273
FspBI CTAG 1 cut(s) 566
GlaI GCGC 3 cut(s) 43, 153, 266
GluI GCNGC 2 cut(s) 150, 273
HaeIII GGCC 2 cut(s) 79, 645
HapII CCGG 1 cut(s) 5
HhaI GCGC 3 cut(s) 44, 154, 267
Hin1II CATG 4 cut(s) 53, 92, 326, 405
Hin6I GCGC 3 cut(s) 42, 152, 265
HinP1I GCGC 3 cut(s) 42, 152, 265
HindIII AAGCTT 1 cut(s) 386
HinfI GANTC 4 cut(s) 23, 326, 487, 614
HpaII CCGG 1 cut(s) 5
HphI GGTGA 1 cut(s) 184
Hpy166II GTNNAC 2 cut(s) 358, 496
Hpy188I TCNGA 4 cut(s) 22, 28, 287, 486
Hpy188III TCNNGA 1 cut(s) 392
Hpy8I GTNNAC 2 cut(s) 358, 496
HpyCH4III ACNGT 3 cut(s) 172, 355, 398
HpyCH4IV ACGT 2 cut(s) 70, 555
HpyCH4V TGCA 3 cut(s) 275, 369, 401
HpyF3I CTNAG 1 cut(s) 618
HpySE526I ACGT 2 cut(s) 70, 555
Hsp92II CATG 4 cut(s) 53, 92, 326, 405
HspAI GCGC 3 cut(s) 42, 152, 265
Kzo9I GATC 2 cut(s) 559, 596
LpnPI CCDG 6 cut(s) 18, 321, 500, 527, 555, 660
Lsp1109I GCAGC 2 cut(s) 136, 259
LweI GCATC 1 cut(s) 356
MaeI CTAG 1 cut(s) 566
MaeII ACGT 2 cut(s) 70, 555
MaeIII GTNAC 1 cut(s) 211
MalI GATC 2 cut(s) 561, 598
MboI GATC 2 cut(s) 559, 596
MboII GAAGA 4 cut(s) 247, 415, 418, 420
MluCI AATT 5 cut(s) 81, 205, 278, 435, 633
MspA1I CMGCKG 1 cut(s) 149
MspI CCGG 1 cut(s) 5
MspR9I CCNGG 2 cut(s) 6, 515
MvaI CCWGG 1 cut(s) 515
NciI CCSGG 1 cut(s) 6
NcoI CCATGG 1 cut(s) 49
NdeI CATATG 1 cut(s) 260
NdeII GATC 2 cut(s) 559, 596
NlaIII CATG 4 cut(s) 53, 92, 326, 405
NlaIV GGNNCC 2 cut(s) 469, 506
NmuCI GTSAC 1 cut(s) 211
NspI RCATGY 1 cut(s) 405
PcsI WCGNNNNNNNCGW 1 cut(s) 195
PfeI GAWTC 4 cut(s) 23, 326, 487, 614
PkrI GCNGC 2 cut(s) 151, 274
PshAI GACNNNNGTC 1 cut(s) 218
Psp6I CCWGG 1 cut(s) 513
PspGI CCWGG 1 cut(s) 513
PspN4I GGNNCC 2 cut(s) 469, 506
PspPI GGNCC 1 cut(s) 644
PstI CTGCAG 1 cut(s) 277
PvuII CAGCTG 1 cut(s) 149
RsaI GTAC 2 cut(s) 203, 602
RsaNI GTAC 2 cut(s) 202, 601
SatI GCNGC 2 cut(s) 150, 273
Sau3AI GATC 2 cut(s) 559, 596
Sau96I GGNCC 1 cut(s) 644
ScrFI CCNGG 2 cut(s) 6, 515
SfaNI GCATC 1 cut(s) 356
SfcI CTRYAG 1 cut(s) 273
Sse9I AATT 5 cut(s) 81, 205, 278, 435, 633
SsiI CCGC 1 cut(s) 113
SspI AATATT 2 cut(s) 37, 318
SspMI CTAG 1 cut(s) 566
StyD4I CCNGG 2 cut(s) 4, 513
StyI CCWWGG 1 cut(s) 49
TaaI ACNGT 3 cut(s) 172, 355, 398
TaiI ACGT 2 cut(s) 73, 558
TaqI TCGA 2 cut(s) 189, 198
TasI AATT 5 cut(s) 81, 205, 278, 435, 633
TatI WGTACW 1 cut(s) 201
TfiI GAWTC 4 cut(s) 23, 326, 487, 614
TscAI CASTG 3 cut(s) 403, 528, 654
TseFI GTSAC 1 cut(s) 211
TseI GCWGC 2 cut(s) 149, 272
Tsp45I GTSAC 1 cut(s) 211
TspDTI ATGAA 4 cut(s) 6, 74, 247, 339
TspRI CASTG 3 cut(s) 403, 528, 654
XapI RAATTY 1 cut(s) 633
XceI RCATGY 1 cut(s) 405
XspI CTAG 1 cut(s) 566
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.