Rh7BG023400

Reticulon-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0012352
Physical Location & Seq
Reverse (-)
1642209 .. 1643491
1283 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG023400.1

Sequence Viewer

Length: 684 bp
ATGCCGGGATTAGTATACTCGTCGGATTCTGATGACATCTATGGAACCAGCCACTCAAGGCTCCACTCAAGGCTCTTTGGACGCGAGAGGCCAATTCATCAGGTTCTTGGGGGTGGCAGAGTTGCGGATGTGTTGTTGTGGAGGAACAGAAATGTATCGGCTGCGCTTTTGGGTGTGATGACCGTGATATGGTTTCTTTTCGAGGTAGTCGAGTACAATTTCGTCACCCTCCTCTGTCACGCCTCCATTACCACTATGCTTGTTATCTTCATTTGGCGCATGGTTGCAGAAATCTTCCGATTGACACCTCCTAGAATACCTGAAATTATATTAGATGACTCTACATTCAGAGATGTAGCTTCCACAGTCCATAAAAAGTTCAACCGTTTCTTGTCAAAGCTCATTGACAGTGCTTGTGGAAAAGACCTACCATTCTTCATCTTGGCAATCATTTCTCTATACATTTTGTCTGTGATTGGAACCTATTTCAGCTTTCTGAATCTTCTTTACTTGGGGTTCCTGTGTCTGGAAACTCTGCCTGTTCTGTACGAGAAATTTGAGGACGACGTTGATCATCTAGCTGGAAAAGTTTCCCGTGAAACAAAGAGATCATACAGAAAGTTTGAGGCTCAGTTCCTCAACAAAATCCCAAGAGGCCCAGTCAAAGACAAGAAAATCAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Reticulon

Protein Analysis

227

Amino Acids

26.14

Weight (kDa)

9.26

Isoelectric Point (pI)

34.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Reticulon PF02453 41 - 197 3.9e-50 Reticulon
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012352)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G18260
fragaria_vesca FvH4_5g16680 FvH4_5g16680
malus_domestica MD06G1220200.v1.1 MD14G1229700.v1.1
prunus_persica Prupe.5G224500_v2.0.a1
pyrus_communis pycom06g19640 pycom14g19120
rosa_chinensis RchiOBHm_Chr7g0179441
rosa_laevigata RLG00000005356
rosa_multiflora Rmu_co8409275.1_g000001
rosa_roxburghii Rroxscaffold_3G00274020
rosa_rugosa Rorug06G0424200 Rorug06G0424200
rosa_samantha Rh7AG023800 Rh7BG023400 Rh7CG024800 Rh7DG024300
rosa_wichuraiana Rw7G001930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 15
AccII CGCG 1 cut(s) 84
AciI CCGC 1 cut(s) 125
AcsI RAATTY 1 cut(s) 554
AfaI GTAC 2 cut(s) 215, 548
AfiI CCNNNNNNNGG 2 cut(s) 189, 526
AgsI TTSAA 1 cut(s) 382
AluBI AGCT 4 cut(s) 359, 400, 492, 581
AluI AGCT 4 cut(s) 359, 400, 492, 581
AoxI GGCC 2 cut(s) 89, 655
ApeKI GCWGC 1 cut(s) 161
ApoI RAATTY 1 cut(s) 554
Asp700I GAANNNNTTC 1 cut(s) 589
AspLEI GCGC 2 cut(s) 166, 279
AspS9I GGNCC 1 cut(s) 656
AsuC2I CCSGG 1 cut(s) 6
AsuHPI GGTGA 1 cut(s) 217
BbvI GCAGC 1 cut(s) 148
BclI TGATCA 1 cut(s) 571
BcnI CCSGG 1 cut(s) 6
BfaI CTAG 2 cut(s) 312, 578
BisI GCNGC 1 cut(s) 162
BlsI GCNGC 1 cut(s) 163
Bme1390I CCNGG 1 cut(s) 6
BmgT120I GGNCC 1 cut(s) 656
BmiI GGNNCC 4 cut(s) 46, 62, 481, 518
BmrFI CCNGG 1 cut(s) 6
BmrI ACTGGG 1 cut(s) 653
BmuI ACTGGG 1 cut(s) 653
BpuEI CTTGAG 2 cut(s) 40, 52
BpuMI CCSGG 1 cut(s) 6
Bsc4I CCNNNNNNNGG 2 cut(s) 189, 526
Bse1I ACTGG 1 cut(s) 659
BseGI GGATG 1 cut(s) 133
BseLI CCNNNNNNNGG 2 cut(s) 189, 526
BseMII CTCAG 1 cut(s) 644
BseNI ACTGG 1 cut(s) 659
BseRI GAGGAG 1 cut(s) 221
BseXI GCAGC 1 cut(s) 148
Bsh1236I CGCG 1 cut(s) 84
BshFI GGCC 2 cut(s) 91, 657
BsiSI CCGG 1 cut(s) 5
BslI CCNNNNNNNGG 2 cut(s) 189, 526
BsnI GGCC 2 cut(s) 91, 657
Bsp143I GATC 2 cut(s) 571, 608
BspACI CCGC 1 cut(s) 125
BspANI GGCC 2 cut(s) 91, 657
BspCNI CTCAG 1 cut(s) 643
BspFNI CGCG 1 cut(s) 84
BspLI GGNNCC 4 cut(s) 46, 62, 481, 518
BsrI ACTGG 1 cut(s) 659
BssMI GATC 2 cut(s) 571, 608
BssNAI GTATAC 1 cut(s) 16
Bst1107I GTATAC 1 cut(s) 16
Bst4CI ACNGT 4 cut(s) 184, 367, 386, 410
BstDEI CTNAG 1 cut(s) 630
BstF5I GGATG 1 cut(s) 133
BstFNI CGCG 1 cut(s) 84
BstHHI GCGC 2 cut(s) 166, 279
BstKTI GATC 2 cut(s) 574, 611
BstMBI GATC 2 cut(s) 571, 608
BstSCI CCNGG 1 cut(s) 4
BstUI CGCG 1 cut(s) 84
BstV1I GCAGC 1 cut(s) 148
BstZ17I GTATAC 1 cut(s) 16
BsuRI GGCC 2 cut(s) 91, 657
BtsCI GGATG 1 cut(s) 133
BtsIMutI CAGTG 1 cut(s) 415
CfoI GCGC 2 cut(s) 166, 279
Cfr13I GGNCC 1 cut(s) 656
CseI GACGC 1 cut(s) 90
Csp6I GTAC 2 cut(s) 214, 547
CspCI CAANNNNNGTGG 2 cut(s) 241, 276
CviAII CATG 1 cut(s) 280
CviQI GTAC 2 cut(s) 214, 547
DdeI CTNAG 1 cut(s) 630
DpnI GATC 2 cut(s) 573, 610
DpnII GATC 2 cut(s) 571, 608
FaeI CATG 1 cut(s) 283
FaiI YATR 9 cut(s) 16, 42, 190, 257, 281, 329, 372, 460, 613
FatI CATG 1 cut(s) 279
FbaI TGATCA 1 cut(s) 571
FblI GTMKAC 1 cut(s) 15
Fnu4HI GCNGC 1 cut(s) 162
FokI GGATG 1 cut(s) 140
Fsp4HI GCNGC 1 cut(s) 162
FspBI CTAG 2 cut(s) 312, 578
GlaI GCGC 2 cut(s) 165, 278
GluI GCNGC 1 cut(s) 162
HaeIII GGCC 2 cut(s) 91, 657
HapII CCGG 1 cut(s) 5
HgaI GACGC 1 cut(s) 90
HhaI GCGC 2 cut(s) 166, 279
Hin1II CATG 1 cut(s) 283
Hin6I GCGC 2 cut(s) 164, 277
HinP1I GCGC 2 cut(s) 164, 277
HinfI GANTC 3 cut(s) 26, 338, 499
HpaII CCGG 1 cut(s) 5
HphI GGTGA 1 cut(s) 217
Hpy166II GTNNAC 1 cut(s) 16
Hpy188I TCNGA 6 cut(s) 25, 31, 299, 350, 498, 680
Hpy188III TCNNGA 1 cut(s) 527
Hpy8I GTNNAC 1 cut(s) 16
Hpy99I CGWCG 2 cut(s) 25, 569
HpyCH4III ACNGT 4 cut(s) 184, 367, 386, 410
HpyCH4IV ACGT 1 cut(s) 567
HpyCH4V TGCA 1 cut(s) 287
HpyF3I CTNAG 1 cut(s) 630
HpySE526I ACGT 1 cut(s) 567
Hsp92II CATG 1 cut(s) 283
HspAI GCGC 2 cut(s) 164, 277
Ksp22I TGATCA 1 cut(s) 571
Kzo9I GATC 2 cut(s) 571, 608
LmnI GCTCC 1 cut(s) 66
LpnPI CCDG 9 cut(s) 18, 61, 86, 333, 512, 533, 552, 567, 672
Lsp1109I GCAGC 1 cut(s) 148
MaeI CTAG 2 cut(s) 312, 578
MaeII ACGT 1 cut(s) 567
MaeIII GTNAC 2 cut(s) 223, 236
MalI GATC 2 cut(s) 573, 610
MboI GATC 2 cut(s) 571, 608
MboII GAAGA 4 cut(s) 259, 286, 427, 494
MluCI AATT 4 cut(s) 93, 217, 324, 554
MlyI GAGTC 1 cut(s) 332
MroXI GAANNNNTTC 1 cut(s) 589
MspI CCGG 1 cut(s) 5
MspR9I CCNGG 1 cut(s) 6
MvnI CGCG 1 cut(s) 84
NciI CCSGG 1 cut(s) 6
NdeII GATC 2 cut(s) 571, 608
NlaIII CATG 1 cut(s) 283
NlaIV GGNNCC 4 cut(s) 46, 62, 481, 518
NmuCI GTSAC 2 cut(s) 223, 236
PcsI WCGNNNNNNNCGW 1 cut(s) 207
PdmI GAANNNNTTC 1 cut(s) 589
PfeI GAWTC 2 cut(s) 26, 499
PkrI GCNGC 1 cut(s) 163
PleI GAGTC 1 cut(s) 332
PpsI GAGTC 1 cut(s) 332
PspN4I GGNNCC 4 cut(s) 46, 62, 481, 518
PspPI GGNCC 1 cut(s) 656
RsaI GTAC 2 cut(s) 215, 548
RsaNI GTAC 2 cut(s) 214, 547
SatI GCNGC 1 cut(s) 162
Sau3AI GATC 2 cut(s) 571, 608
Sau96I GGNCC 1 cut(s) 656
SchI GAGTC 1 cut(s) 332
ScrFI CCNGG 1 cut(s) 6
SmlI CTYRAG 2 cut(s) 55, 67
SmoI CTYRAG 2 cut(s) 55, 67
Sse9I AATT 4 cut(s) 93, 217, 324, 554
SsiI CCGC 1 cut(s) 125
SspMI CTAG 2 cut(s) 312, 578
StyD4I CCNGG 1 cut(s) 4
TaaI ACNGT 4 cut(s) 184, 367, 386, 410
TaiI ACGT 1 cut(s) 570
TaqI TCGA 2 cut(s) 201, 210
TasI AATT 4 cut(s) 93, 217, 324, 554
TatI WGTACW 1 cut(s) 213
TfiI GAWTC 2 cut(s) 26, 499
TscAI CASTG 1 cut(s) 415
TseFI GTSAC 2 cut(s) 223, 236
TseI GCWGC 1 cut(s) 161
Tsp45I GTSAC 2 cut(s) 223, 236
TspDTI ATGAA 3 cut(s) 86, 259, 427
TspRI CASTG 1 cut(s) 415
XapI RAATTY 1 cut(s) 554
XmiI GTMKAC 1 cut(s) 15
XmnI GAANNNNTTC 1 cut(s) 589
XspI CTAG 2 cut(s) 312, 578
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.