Rh7AG023800

Reticulon-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0012352
Physical Location & Seq
Reverse (-)
1566903 .. 1568135
1233 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG023800.1

Sequence Viewer

Length: 672 bp
ATGCCGGGATTAGTATACTCATCGGATTCTGATGACATCTATAGAACCAGCCACTCAAGGCTCTTTGGACGAGAGAGGCCAATTCATCAGGTTCTTGGAGGTGGCAGAGTTGCGGATGTGTTATTGTGGAGGAACAGAAATGTATCGGCTGCGCTTTTGGGTGTGATGACCGTGATATGGTTTCTTTTCGAGGTAGTTGAGTACAATTTCGTCACCCTCCTCTGTCACGCCTCCATTACCACTATGCTTGTTATCTTCATTTGGCGCATGGTTGCAGAAATCTTCGGATTGACACCTCCTAGAATACCTGAAATTATATTGGATGACTCTACATTCAGAGATGTAGCTTCCACAGTCCATAAAAAGTTCAACCGTTTCTTGTCAAAGCTCATTGACAGTGCTTGTGGAAAAGACCTACCATTCTTCATCTTGGCAATCGTTTCTCTATACATTTTGTCTGTGATTGGAACCTATTTCAGCTTTCTGAATCTTCTTTACTTGGGGTTCCTGTGTCTGGAAACTCTGCCTTTTCTGTACGAGAAATTTGAGGGCGACGTTGATCATCTAGCTGGAAAAGTTTCCCGTGAAATAAAGAGATCATACAGAAAGTTTGAAGCTCAGTTCCTCAACAAAATCCCAAGAGGCCCAGTCAAAGACAAGAAAATCAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Reticulon

Protein Analysis

223

Amino Acids

25.63

Weight (kDa)

9.26

Isoelectric Point (pI)

32.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Reticulon PF02453 37 - 193 3.8e-49 Reticulon
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012352)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G18260
fragaria_vesca FvH4_5g16680 FvH4_5g16680
malus_domestica MD06G1220200.v1.1 MD14G1229700.v1.1
prunus_persica Prupe.5G224500_v2.0.a1
pyrus_communis pycom06g19640 pycom14g19120
rosa_chinensis RchiOBHm_Chr7g0179441
rosa_laevigata RLG00000005356
rosa_multiflora Rmu_co8409275.1_g000001
rosa_roxburghii Rroxscaffold_3G00274020
rosa_rugosa Rorug06G0424200 Rorug06G0424200
rosa_samantha Rh7AG023800 Rh7BG023400 Rh7CG024800 Rh7DG024300
rosa_wichuraiana Rw7G001930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 15
AciI CCGC 1 cut(s) 113
AcsI RAATTY 1 cut(s) 542
AfaI GTAC 2 cut(s) 203, 536
AfiI CCNNNNNNNGG 2 cut(s) 177, 514
AgsI TTSAA 2 cut(s) 370, 614
AluBI AGCT 5 cut(s) 347, 388, 480, 569, 617
AluI AGCT 5 cut(s) 347, 388, 480, 569, 617
AoxI GGCC 2 cut(s) 77, 643
ApeKI GCWGC 1 cut(s) 149
ApoI RAATTY 1 cut(s) 542
Asp700I GAANNNNTTC 1 cut(s) 577
AspLEI GCGC 2 cut(s) 154, 267
AspS9I GGNCC 1 cut(s) 644
AsuC2I CCSGG 1 cut(s) 6
AsuHPI GGTGA 1 cut(s) 205
BbvI GCAGC 1 cut(s) 136
BclI TGATCA 1 cut(s) 559
BcnI CCSGG 1 cut(s) 6
BfaI CTAG 2 cut(s) 300, 566
BfmI CTRYAG 1 cut(s) 40
BisI GCNGC 1 cut(s) 150
BlsI GCNGC 1 cut(s) 151
Bme1390I CCNGG 1 cut(s) 6
BmgT120I GGNCC 1 cut(s) 644
BmiI GGNNCC 2 cut(s) 469, 506
BmrFI CCNGG 1 cut(s) 6
BmrI ACTGGG 1 cut(s) 641
BmuI ACTGGG 1 cut(s) 641
BpuEI CTTGAG 1 cut(s) 40
BpuMI CCSGG 1 cut(s) 6
Bsc4I CCNNNNNNNGG 2 cut(s) 177, 514
Bse1I ACTGG 1 cut(s) 647
BseGI GGATG 2 cut(s) 121, 328
BseLI CCNNNNNNNGG 2 cut(s) 177, 514
BseMII CTCAG 1 cut(s) 632
BseNI ACTGG 1 cut(s) 647
BseRI GAGGAG 1 cut(s) 209
BseXI GCAGC 1 cut(s) 136
BshFI GGCC 2 cut(s) 79, 645
BsiSI CCGG 1 cut(s) 5
BslI CCNNNNNNNGG 2 cut(s) 177, 514
BsnI GGCC 2 cut(s) 79, 645
Bsp143I GATC 2 cut(s) 559, 596
BspACI CCGC 1 cut(s) 113
BspANI GGCC 2 cut(s) 79, 645
BspCNI CTCAG 1 cut(s) 631
BspLI GGNNCC 2 cut(s) 469, 506
BsrI ACTGG 1 cut(s) 647
BssMI GATC 2 cut(s) 559, 596
BssNAI GTATAC 1 cut(s) 16
Bst1107I GTATAC 1 cut(s) 16
Bst4CI ACNGT 4 cut(s) 172, 355, 374, 398
BstDEI CTNAG 1 cut(s) 618
BstF5I GGATG 2 cut(s) 121, 328
BstHHI GCGC 2 cut(s) 154, 267
BstKTI GATC 2 cut(s) 562, 599
BstMBI GATC 2 cut(s) 559, 596
BstSCI CCNGG 1 cut(s) 4
BstSFI CTRYAG 1 cut(s) 40
BstV1I GCAGC 1 cut(s) 136
BstZ17I GTATAC 1 cut(s) 16
BsuRI GGCC 2 cut(s) 79, 645
BtsCI GGATG 2 cut(s) 121, 328
BtsIMutI CAGTG 1 cut(s) 403
CfoI GCGC 2 cut(s) 154, 267
Cfr13I GGNCC 1 cut(s) 644
Csp6I GTAC 2 cut(s) 202, 535
CspCI CAANNNNNGTGG 2 cut(s) 229, 264
CviAII CATG 1 cut(s) 268
CviQI GTAC 2 cut(s) 202, 535
DdeI CTNAG 1 cut(s) 618
DpnI GATC 2 cut(s) 561, 598
DpnII GATC 2 cut(s) 559, 596
FaeI CATG 1 cut(s) 271
FaiI YATR 9 cut(s) 16, 42, 178, 245, 269, 317, 360, 448, 601
FatI CATG 1 cut(s) 267
FbaI TGATCA 1 cut(s) 559
FblI GTMKAC 1 cut(s) 15
Fnu4HI GCNGC 1 cut(s) 150
FokI GGATG 2 cut(s) 128, 335
Fsp4HI GCNGC 1 cut(s) 150
FspBI CTAG 2 cut(s) 300, 566
GlaI GCGC 2 cut(s) 153, 266
GluI GCNGC 1 cut(s) 150
HaeIII GGCC 2 cut(s) 79, 645
HapII CCGG 1 cut(s) 5
HhaI GCGC 2 cut(s) 154, 267
Hin1II CATG 1 cut(s) 271
Hin6I GCGC 2 cut(s) 152, 265
HinP1I GCGC 2 cut(s) 152, 265
HinfI GANTC 3 cut(s) 26, 326, 487
HpaII CCGG 1 cut(s) 5
HphI GGTGA 1 cut(s) 205
Hpy166II GTNNAC 1 cut(s) 16
Hpy188I TCNGA 6 cut(s) 25, 31, 287, 338, 486, 668
Hpy188III TCNNGA 1 cut(s) 515
Hpy8I GTNNAC 1 cut(s) 16
Hpy99I CGWCG 1 cut(s) 557
HpyCH4III ACNGT 4 cut(s) 172, 355, 374, 398
HpyCH4IV ACGT 1 cut(s) 555
HpyCH4V TGCA 1 cut(s) 275
HpyF3I CTNAG 1 cut(s) 618
HpySE526I ACGT 1 cut(s) 555
Hsp92II CATG 1 cut(s) 271
HspAI GCGC 2 cut(s) 152, 265
Ksp22I TGATCA 1 cut(s) 559
Kzo9I GATC 2 cut(s) 559, 596
LpnPI CCDG 8 cut(s) 18, 61, 74, 321, 500, 521, 555, 660
Lsp1109I GCAGC 1 cut(s) 136
MaeI CTAG 2 cut(s) 300, 566
MaeII ACGT 1 cut(s) 555
MaeIII GTNAC 2 cut(s) 211, 224
MalI GATC 2 cut(s) 561, 598
MboI GATC 2 cut(s) 559, 596
MboII GAAGA 4 cut(s) 247, 274, 415, 482
MluCI AATT 4 cut(s) 81, 205, 312, 542
MlyI GAGTC 1 cut(s) 320
MroXI GAANNNNTTC 1 cut(s) 577
MspI CCGG 1 cut(s) 5
MspR9I CCNGG 1 cut(s) 6
NciI CCSGG 1 cut(s) 6
NdeII GATC 2 cut(s) 559, 596
NlaIII CATG 1 cut(s) 271
NlaIV GGNNCC 2 cut(s) 469, 506
NmuCI GTSAC 2 cut(s) 211, 224
PdmI GAANNNNTTC 1 cut(s) 577
PfeI GAWTC 2 cut(s) 26, 487
PkrI GCNGC 1 cut(s) 151
PleI GAGTC 1 cut(s) 320
PpsI GAGTC 1 cut(s) 320
PspN4I GGNNCC 2 cut(s) 469, 506
PspPI GGNCC 1 cut(s) 644
RsaI GTAC 2 cut(s) 203, 536
RsaNI GTAC 2 cut(s) 202, 535
SatI GCNGC 1 cut(s) 150
Sau3AI GATC 2 cut(s) 559, 596
Sau96I GGNCC 1 cut(s) 644
SchI GAGTC 1 cut(s) 320
ScrFI CCNGG 1 cut(s) 6
SfcI CTRYAG 1 cut(s) 40
SmlI CTYRAG 1 cut(s) 55
SmoI CTYRAG 1 cut(s) 55
Sse9I AATT 4 cut(s) 81, 205, 312, 542
SsiI CCGC 1 cut(s) 113
SspMI CTAG 2 cut(s) 300, 566
StyD4I CCNGG 1 cut(s) 4
TaaI ACNGT 4 cut(s) 172, 355, 374, 398
TaiI ACGT 1 cut(s) 558
TaqI TCGA 1 cut(s) 189
TasI AATT 4 cut(s) 81, 205, 312, 542
TatI WGTACW 1 cut(s) 201
TfiI GAWTC 2 cut(s) 26, 487
TscAI CASTG 1 cut(s) 403
TseFI GTSAC 2 cut(s) 211, 224
TseI GCWGC 1 cut(s) 149
Tsp45I GTSAC 2 cut(s) 211, 224
TspDTI ATGAA 3 cut(s) 74, 247, 415
TspRI CASTG 1 cut(s) 403
XapI RAATTY 1 cut(s) 542
XmiI GTMKAC 1 cut(s) 15
XmnI GAANNNNTTC 1 cut(s) 577
XspI CTAG 2 cut(s) 300, 566
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.