AT3G19260

lag1 longevity assurance homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0010380
Physical Location & Seq
Reverse (-)
6669065 .. 6671638
2574 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G19260.1

Sequence Viewer

Length: 891 bp
ATGGAATCGGTATCATCACGCGGCGGAGACCCCGTCGTAAAACCGTCGATGGAGGTCTGGCATTTCCAGATTGCTGTCTATTTCGCTTTCGGATTCTTCTTCTTGAGGCTTGTCCTCGATAGATACGTCTTTCAAAGGATAGCTCTTTGGCTTTTGAGTACTGGTTCTGCTCCGATTAAATTGAATGATGCTGCTACTCGGGCAAAAATCGTCAAATGCAAAGAGTCCTTGTGGAAATTGTTGTATTATGCTGCTTGTGACTTTTTCGTTCTACAAGTCATTTATCACGAGCCGTGGGCTAGAGATATCAAACTCTACTTCCACGGTTGGCCTAATCAAGAGTTGAAGCTTTCAATAAAGCTTTACTATATGTGCCAGTGCGGTTTTTATGTGTATGGTGTGGCTGCGTTGCTTGCATGGGAGACAAGAAGAAAGGATTTTGCTGTCATGATGTCTCACCATGTAATTACAATCATCCTGCTTAGCTACTCCTACTTAACCAGTTTTTTCCGGATTGGAGCAATCATCCTAGCCCTTCATGATGCAAGTGATGTCTTTATGGAAACTGCTAAAATTTTCAAGTACTCTGAAAAAGAATTTGGAGCAAGTGTATGTTTTGCATTATTTGCTGTCTCCTGGCTATTGCTACGGTTGATATACTTCCCATTTTGGATCATCAGGGCCACGAGCATTGAACTCCTGGATTATTTGGATATGACATCAGCTGAAGGCACATTGATGTACTATTCTTTCAACACTATGTTACTAATGCTGCTTGTTTTCCACATATATTGGTGGTATCTCATTTGTGCCATGATTGTAAGACTACTTAAAAACAGAGGAAAAGTTGGAGAAGACATAAGATCCGATTCAGAGGATGATGATGATTAG

Protein Analysis

296

Amino Acids

34.7

Weight (kDa)

7.03

Isoelectric Point (pI)

31.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TRAM_LAG1_CLN8 PF03798 72 - 270 2.6e-50 TLC domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010380)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G19260
fragaria_vesca FvH4_2g06020 FvH4_2g06020 FvH4_2g06020 FvH4_2g06020 FvH4_2g06020
malus_domestica MD00G1035400.v1.1 MD05G1081300.v1.1
prunus_persica Prupe.8G125600_v2.0.a1
pyrus_communis pycom05g07470 pycom10g07860
rosa_chinensis RchiOBHm_Chr6g0257331
rosa_laevigata RLG00000014688
rosa_multiflora Rmu_sc0000820.1_g000006
rosa_roxburghii Rroxscaffold_7G00208620
rosa_rugosa Rorug05G0573500 Rorug05G0573600
rosa_samantha Rh6AG090800 Rh6CG078600 Rh6DG074400
rosa_wichuraiana Rw6G007920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 21
AccIII TCCGGA 1 cut(s) 510
AciI CCGC 3 cut(s) 21, 24, 381
AclWI GGATC 2 cut(s) 680, 858
AcsI RAATTY 2 cut(s) 573, 596
AcuI CTGAAG 1 cut(s) 747
AfaI GTAC 3 cut(s) 160, 584, 743
AgsI TTSAA 7 cut(s) 134, 184, 346, 354, 580, 695, 754
AjnI CCWGG 2 cut(s) 635, 699
AjuI GAANNNNNNNTTGG 2 cut(s) 582, 614
AluBI AGCT 5 cut(s) 143, 349, 361, 486, 725
AluI AGCT 5 cut(s) 143, 349, 361, 486, 725
Alw26I GTCTC 4 cut(s) 21, 416, 459, 637
AlwI GGATC 2 cut(s) 680, 858
Ama87I CYCGRG 1 cut(s) 198
Aor13HI TCCGGA 1 cut(s) 510
AoxI GGCC 2 cut(s) 329, 681
ApeKI GCWGC 4 cut(s) 191, 251, 404, 772
ApoI RAATTY 2 cut(s) 573, 596
AspS9I GGNCC 1 cut(s) 681
AsuHPI GGTGA 1 cut(s) 449
AvaI CYCGRG 1 cut(s) 198
BauI CACGAG 2 cut(s) 287, 685
BbsI GAAGAC 1 cut(s) 861
BbvI GCAGC 4 cut(s) 178, 238, 391, 759
BccI CCATC 1 cut(s) 43
BceAI ACGGC 1 cut(s) 277
BciT130I CCWGG 2 cut(s) 637, 701
BcoDI GTCTC 4 cut(s) 21, 416, 459, 637
BfaI CTAG 2 cut(s) 300, 530
BisI GCNGC 5 cut(s) 22, 192, 252, 405, 773
BlpI GCTNAGC 1 cut(s) 482
BlsI GCNGC 5 cut(s) 23, 193, 253, 406, 774
BmcAI AGTACT 2 cut(s) 160, 584
Bme1390I CCNGG 2 cut(s) 637, 701
BmeT110I CYCGRG 1 cut(s) 198
BmgT120I GGNCC 1 cut(s) 681
BmrFI CCNGG 2 cut(s) 637, 701
BmsI GCATC 2 cut(s) 178, 532
BpiI GAAGAC 1 cut(s) 861
Bpu1102I GCTNAGC 1 cut(s) 482
BpuEI CTTGAG 1 cut(s) 124
BsaI GGTCTC 1 cut(s) 21
BsaJI CCNNGG 2 cut(s) 293, 322
BsaWI WCCGGW 1 cut(s) 510
BsaXI ACNNNNNCTCC 4 cut(s) 18, 48, 594, 624
Bse1I ACTGG 3 cut(s) 166, 376, 501
BseAI TCCGGA 1 cut(s) 510
BseBI CCWGG 2 cut(s) 637, 701
BseDI CCNNGG 2 cut(s) 293, 322
BseGI GGATG 3 cut(s) 474, 525, 883
BseNI ACTGG 3 cut(s) 166, 376, 501
BseXI GCAGC 4 cut(s) 178, 238, 391, 759
Bsh1236I CGCG 1 cut(s) 21
BshFI GGCC 2 cut(s) 331, 683
BsiHKCI CYCGRG 1 cut(s) 198
BsiSI CCGG 1 cut(s) 511
BsmAI GTCTC 4 cut(s) 21, 416, 459, 637
BsnI GGCC 2 cut(s) 331, 683
Bso31I GGTCTC 1 cut(s) 21
BsoBI CYCGRG 1 cut(s) 198
Bsp13I TCCGGA 1 cut(s) 510
Bsp143I GATC 2 cut(s) 672, 863
Bsp1720I GCTNAGC 1 cut(s) 482
BspACI CCGC 3 cut(s) 21, 24, 381
BspANI GGCC 2 cut(s) 331, 683
BspEI TCCGGA 1 cut(s) 510
BspFNI CGCG 1 cut(s) 21
BspHI TCATGA 2 cut(s) 447, 538
BspPI GGATC 2 cut(s) 680, 858
BspTNI GGTCTC 1 cut(s) 21
BsrI ACTGG 3 cut(s) 166, 376, 501
BssECI CCNNGG 2 cut(s) 293, 322
BssMI GATC 2 cut(s) 672, 863
BssSI CACGAG 2 cut(s) 287, 685
Bst2BI CACGAG 2 cut(s) 287, 685
Bst2UI CCWGG 2 cut(s) 637, 701
Bst4CI ACNGT 3 cut(s) 45, 326, 651
BstAPI GCANNNNNTGC 1 cut(s) 626
BstC8I GCNNGC 1 cut(s) 414
BstDEI CTNAG 1 cut(s) 482
BstDSI CCRYGG 2 cut(s) 293, 322
BstF5I GGATG 3 cut(s) 474, 525, 883
BstFNI CGCG 1 cut(s) 21
BstKTI GATC 2 cut(s) 675, 866
BstMAI GTCTC 4 cut(s) 21, 416, 459, 637
BstMBI GATC 2 cut(s) 672, 863
BstMWI GCNNNNNNNGC 3 cut(s) 200, 413, 626
BstNI CCWGG 2 cut(s) 637, 701
BstSCI CCNGG 2 cut(s) 635, 699
BstUI CGCG 1 cut(s) 21
BstV1I GCAGC 4 cut(s) 178, 238, 391, 759
BstV2I GAAGAC 1 cut(s) 861
BstX2I RGATCY 1 cut(s) 863
BstYI RGATCY 1 cut(s) 863
BsuRI GGCC 2 cut(s) 331, 683
BtgI CCRYGG 2 cut(s) 293, 322
BtsCI GGATG 3 cut(s) 474, 525, 883
BtsIMutI CAGTG 1 cut(s) 383
Cac8I GCNNGC 1 cut(s) 414
CciI TCATGA 2 cut(s) 447, 538
Cfr13I GGNCC 1 cut(s) 681
Csp6I GTAC 3 cut(s) 159, 583, 742
CspCI CAANNNNNGTGG 4 cut(s) 673, 708, 773, 808
CviAII CATG 5 cut(s) 417, 448, 461, 539, 814
CviQI GTAC 3 cut(s) 159, 583, 742
DdeI CTNAG 1 cut(s) 482
DpnI GATC 2 cut(s) 674, 865
DpnII GATC 2 cut(s) 672, 863
EciI GGCGGA 1 cut(s) 39
Eco31I GGTCTC 1 cut(s) 21
Eco32I GATATC 1 cut(s) 307
Eco57I CTGAAG 1 cut(s) 747
Eco88I CYCGRG 1 cut(s) 198
EcoRII CCWGG 2 cut(s) 635, 699
EcoRV GATATC 1 cut(s) 307
FaeI CATG 5 cut(s) 420, 451, 464, 542, 817
FatI CATG 5 cut(s) 416, 447, 460, 538, 813
Fnu4HI GCNGC 5 cut(s) 22, 192, 252, 405, 773
FokI GGATG 2 cut(s) 461, 512
Fsp4HI GCNGC 5 cut(s) 22, 192, 252, 405, 773
FspBI CTAG 2 cut(s) 300, 530
GluI GCNGC 5 cut(s) 22, 192, 252, 405, 773
HaeIII GGCC 2 cut(s) 331, 683
HapII CCGG 1 cut(s) 511
Hin1II CATG 5 cut(s) 420, 451, 464, 542, 817
HindIII AAGCTT 2 cut(s) 347, 359
HinfI GANTC 4 cut(s) 5, 93, 224, 869
HpaII CCGG 1 cut(s) 511
HphI GGTGA 1 cut(s) 449
Hpy188I TCNGA 5 cut(s) 92, 174, 589, 868, 874
Hpy188III TCNNGA 7 cut(s) 67, 103, 287, 338, 448, 511, 539
Hpy99I CGWCG 2 cut(s) 38, 49
HpyAV CCTTC 2 cut(s) 545, 722
HpyCH4III ACNGT 3 cut(s) 45, 326, 651
HpyCH4IV ACGT 1 cut(s) 126
HpyCH4V TGCA 4 cut(s) 219, 416, 545, 620
HpyF10VI GCNNNNNNNGC 3 cut(s) 200, 413, 626
HpyF3I CTNAG 1 cut(s) 482
HpySE526I ACGT 1 cut(s) 126
Hsp92II CATG 5 cut(s) 420, 451, 464, 542, 817
Kpn2I TCCGGA 1 cut(s) 510
Kzo9I GATC 2 cut(s) 672, 863
LmnI GCTCC 3 cut(s) 175, 518, 602
Lsp1109I GCAGC 4 cut(s) 178, 238, 391, 759
LweI GCATC 2 cut(s) 178, 532
MaeI CTAG 2 cut(s) 300, 530
MaeII ACGT 1 cut(s) 126
MaeIII GTNAC 2 cut(s) 257, 762
MalI GATC 2 cut(s) 674, 865
MboI GATC 2 cut(s) 672, 863
MboII GAAGA 4 cut(s) 88, 91, 441, 866
MflI RGATCY 1 cut(s) 863
MluCI AATT 5 cut(s) 179, 236, 465, 573, 596
MlyI GAGTC 1 cut(s) 233
MmeI TCCRAC 1 cut(s) 829
MnlI CCTC 5 cut(s) 46, 99, 125, 833, 868
MroI TCCGGA 1 cut(s) 510
MseI TTAA 3 cut(s) 177, 497, 831
MslI CAYNNNNRTG 1 cut(s) 737
MspA1I CMGCKG 1 cut(s) 725
MspI CCGG 1 cut(s) 511
MspR9I CCNGG 2 cut(s) 637, 701
MvaI CCWGG 2 cut(s) 637, 701
MvnI CGCG 1 cut(s) 21
MwoI GCNNNNNNNGC 3 cut(s) 200, 413, 626
NdeII GATC 2 cut(s) 672, 863
NlaIII CATG 5 cut(s) 420, 451, 464, 542, 817
NmuCI GTSAC 1 cut(s) 257
PagI TCATGA 2 cut(s) 447, 538
PcsI WCGNNNNNNNCGW 1 cut(s) 123
PfeI GAWTC 3 cut(s) 5, 93, 869
PflFI GACNNNGTC 1 cut(s) 32
PfoI TCCNGGA 1 cut(s) 699
PkrI GCNGC 5 cut(s) 23, 193, 253, 406, 774
PleI GAGTC 1 cut(s) 232
PpsI GAGTC 1 cut(s) 232
Psp6I CCWGG 2 cut(s) 635, 699
PspGI CCWGG 2 cut(s) 635, 699
PspPI GGNCC 1 cut(s) 681
PsuI RGATCY 1 cut(s) 863
PsyI GACNNNGTC 1 cut(s) 32
PvuII CAGCTG 1 cut(s) 725
RsaI GTAC 3 cut(s) 160, 584, 743
RsaNI GTAC 3 cut(s) 159, 583, 742
RseI CAYNNNNRTG 1 cut(s) 737
SaqAI TTAA 3 cut(s) 177, 497, 831
SatI GCNGC 5 cut(s) 22, 192, 252, 405, 773
Sau3AI GATC 2 cut(s) 672, 863
Sau96I GGNCC 1 cut(s) 681
ScaI AGTACT 2 cut(s) 160, 584
SchI GAGTC 1 cut(s) 233
ScrFI CCNGG 2 cut(s) 637, 701
SetI ASST 7 cut(s) 57, 129, 145, 351, 363, 488, 727
SfaNI GCATC 2 cut(s) 178, 532
SmiMI CAYNNNNRTG 1 cut(s) 737
SmlI CTYRAG 1 cut(s) 103
SmoI CTYRAG 1 cut(s) 103
Sse9I AATT 5 cut(s) 179, 236, 465, 573, 596
SsiI CCGC 3 cut(s) 21, 24, 381
SspMI CTAG 2 cut(s) 300, 530
StyD4I CCNGG 2 cut(s) 635, 699
TaaI ACNGT 3 cut(s) 45, 326, 651
TaiI ACGT 1 cut(s) 129
TaqI TCGA 2 cut(s) 47, 117
TasI AATT 5 cut(s) 179, 236, 465, 573, 596
TatI WGTACW 3 cut(s) 158, 582, 741
TauI GCSGC 1 cut(s) 24
TfiI GAWTC 3 cut(s) 5, 93, 869
Tru1I TTAA 3 cut(s) 177, 497, 831
Tru9I TTAA 3 cut(s) 177, 497, 831
TscAI CASTG 1 cut(s) 383
TseFI GTSAC 1 cut(s) 257
TseI GCWGC 4 cut(s) 191, 251, 404, 772
Tsp45I GTSAC 1 cut(s) 257
TspDTI ATGAA 1 cut(s) 527
TspRI CASTG 1 cut(s) 383
Tth111I GACNNNGTC 1 cut(s) 32
XapI RAATTY 2 cut(s) 573, 596
XspI CTAG 2 cut(s) 300, 530
ZrmI AGTACT 2 cut(s) 160, 584
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.