Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0010380

Physical Location & Seq

Genomic Coordinates Reverse (-)

58676220 .. 58683832

Gene Structure 7613 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00208620.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGGAATCGTTCTGGAGCCACAATGCCGCCCCAGACTCGTCGCATTTCCTCGTCGCCGTCTACTTCGCCGTTGGATTCTTCTTCGCTAGGCTCTTCCTTGATAGAGTCATCTTCACCAGGCTTGCCATCTGGTTGTTGGGTAAAGGCTCTGCTCCATTGAAAAAGATTGATATGGTCCAACGGGCAAAGATTGTAAAATGCTCAGAGTCAATGTGGAAGTTAACATACTATACAGCCGTTGAAGCTTGCATTCTCAGTATAAGCTACCACGAGCCATGGTTCACAGATACAGCAGAGTACTTCAAAGGCTGGCCAAACCAAGAGTTGGGGCTTCCCCTAAAGCTTGTCTATATGTGTCAATGTGGATTCTACACCTACAGCATCGTTGCTCTCCTTACATGGGAGACTCGAAGGAAGGATTTCTCAGTGATGATGTCTCATCATGTAATTACCGTCTTCCTGATTGGATGCTCATACGTTACAAGCTTTTTCCGGATTGGCTCAATCATTCTTGCCCTGCATGATGGGAGTGATGTATTCATGGAAGCTGCCAAGGTCTTCAAATATTCCGAGAAGGAGCTTGCAGCAAGTGTGTTCTTTGGATGTTTTGCTGTTTCATGGCTCATACTGCGGTTAATATACTTCCCCTTTTGGGTCATAAGCTCAACAAGGTCTGCTCTCATGCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001676 GO:0002238 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0005886 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006643 GO:0006665 GO:0006672 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0010033 GO:0012505 GO:0016020 GO:0016053 GO:0016410 GO:0016740 GO:0016746 GO:0016747 GO:0019752 GO:0030148 GO:0032787 GO:0034641 GO:0042221 GO:0042759 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046467 GO:0046513 GO:0050291 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:0071944 GO:0072330 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00600 ko01100 ko04071 map00600 map01100 map04071

Pfam Domains

Protein Families

TRAM_LAG1_CLN8

Protein Analysis

229

Amino Acids

26.41

Weight (kDa)

8.69

Isoelectric Point (pI)

28.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TRAM_LAG1_CLN8	PF03798	66 - 224	3.6e-43	TLC domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010380)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19260
fragaria_vesca	FvH4_2g06020 FvH4_2g06020 FvH4_2g06020 FvH4_2g06020 FvH4_2g06020
malus_domestica	MD00G1035400.v1.1 MD05G1081300.v1.1
prunus_persica	Prupe.8G125600_v2.0.a1
pyrus_communis	pycom05g07470 pycom10g07860
rosa_chinensis	RchiOBHm_Chr6g0257331
rosa_laevigata	RLG00000014688
rosa_multiflora	Rmu_sc0000820.1_g000006
rosa_roxburghii	Rroxscaffold_7G00208620
rosa_rugosa	Rorug05G0573500 Rorug05G0573600
rosa_samantha	Rh6AG090800 Rh6CG078600 Rh6DG074400
rosa_wichuraiana	Rw6G007920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	325
AccI	GTMKAC	1 cut(s)	60
AccIII	TCCGGA	1 cut(s)	492
AciI	CCGC	2 cut(s)	27, 631
AcoI	YGGCCR	1 cut(s)	311
AfaI	GTAC	1 cut(s)	299
AfiI	CCNNNNNNNGG	3 cut(s)	325, 400, 652
AgsI	TTSAA	4 cut(s)	160, 242, 304, 562
AjnI	CCWGG	1 cut(s)	116
AluBI	AGCT	7 cut(s)	245, 264, 343, 486, 548, 580, 663
AluI	AGCT	7 cut(s)	245, 264, 343, 486, 548, 580, 663
Alw26I	GTCTC	2 cut(s)	398, 441
Aor13HI	TCCGGA	1 cut(s)	492
AoxI	GGCC	1 cut(s)	311
ApeKI	GCWGC	2 cut(s)	548, 584
Asp700I	GAANNNNTTC	1 cut(s)	419
AspS9I	GGNCC	1 cut(s)	175
AsuHPI	GGTGA	1 cut(s)	106
AvaII	GGWCC	1 cut(s)	175
BalI	TGGCCA	1 cut(s)	313
BarI	GAAGNNNNNNTAC	2 cut(s)	209, 241
BauI	CACGAG	1 cut(s)	269
BbsI	GAAGAC	2 cut(s)	448, 550
BbvI	GCAGC	2 cut(s)	535, 596
BccI	CCATC	2 cut(s)	134, 518
BceAI	ACGGC	3 cut(s)	41, 53, 221
BciT130I	CCWGG	1 cut(s)	118
BcoDI	GTCTC	2 cut(s)	398, 441
BfaI	CTAG	1 cut(s)	87
BfmI	CTRYAG	1 cut(s)	376
BisI	GCNGC	3 cut(s)	27, 549, 585
BlsI	GCNGC	3 cut(s)	28, 550, 586
BmcAI	AGTACT	1 cut(s)	299
Bme1390I	CCNGG	1 cut(s)	118
Bme18I	GGWCC	1 cut(s)	175
BmgT120I	GGNCC	1 cut(s)	175
BmiI	GGNNCC	1 cut(s)	17
BmrFI	CCNGG	1 cut(s)	118
BmsI	GCATC	2 cut(s)	390, 458
BpiI	GAAGAC	2 cut(s)	448, 550
BpmI	CTGGAG	1 cut(s)	34
BsaJI	CCNNGG	2 cut(s)	275, 552
BsaWI	WCCGGW	1 cut(s)	492
Bsc4I	CCNNNNNNNGG	3 cut(s)	325, 400, 652
BseAI	TCCGGA	1 cut(s)	492
BseBI	CCWGG	1 cut(s)	118
BseDI	CCNNGG	2 cut(s)	275, 552
BseGI	GGATG	2 cut(s)	473, 608
BseLI	CCNNNNNNNGG	3 cut(s)	325, 400, 652
BseMII	CTCAG	3 cut(s)	216, 268, 438
BseXI	GCAGC	2 cut(s)	535, 596
BshFI	GGCC	1 cut(s)	313
BsiSI	CCGG	1 cut(s)	493
BslI	CCNNNNNNNGG	3 cut(s)	325, 400, 652
BsmAI	GTCTC	2 cut(s)	398, 441
BsmI	GAATGC	1 cut(s)	249
BsnI	GGCC	1 cut(s)	313
Bsp13I	TCCGGA	1 cut(s)	492
Bsp19I	CCATGG	1 cut(s)	275
BspACI	CCGC	2 cut(s)	27, 631
BspANI	GGCC	1 cut(s)	313
BspCNI	CTCAG	3 cut(s)	215, 267, 437
BspEI	TCCGGA	1 cut(s)	492
BspLI	GGNNCC	1 cut(s)	17
BspQI	GCTCTTC	1 cut(s)	98
BssECI	CCNNGG	2 cut(s)	275, 552
BssSI	CACGAG	1 cut(s)	269
BssT1I	CCWWGG	2 cut(s)	275, 552
Bst2BI	CACGAG	1 cut(s)	269
Bst2UI	CCWGG	1 cut(s)	118
Bst4CI	ACNGT	1 cut(s)	454
Bst6I	CTCTTC	1 cut(s)	98
BstC8I	GCNNGC	4 cut(s)	123, 247, 311, 582
BstDEI	CTNAG	3 cut(s)	202, 254, 424
BstDSI	CCRYGG	1 cut(s)	275
BstF5I	GGATG	2 cut(s)	473, 608
BstMAI	GTCTC	2 cut(s)	398, 441
BstMWI	GCNNNNNNNGC	2 cut(s)	242, 628
BstNI	CCWGG	1 cut(s)	118
BstSCI	CCNGG	1 cut(s)	116
BstSFI	CTRYAG	1 cut(s)	376
BstV1I	GCAGC	2 cut(s)	535, 596
BstV2I	GAAGAC	2 cut(s)	448, 550
BsuRI	GGCC	1 cut(s)	313
BtgI	CCRYGG	1 cut(s)	275
BtsCI	GGATG	2 cut(s)	473, 608
BtsIMutI	CAGTG	1 cut(s)	432
Cac8I	GCNNGC	4 cut(s)	123, 247, 311, 582
Cfr13I	GGNCC	1 cut(s)	175
Csp6I	GTAC	1 cut(s)	298
CviAII	CATG	7 cut(s)	276, 399, 443, 521, 541, 618, 682
CviQI	GTAC	1 cut(s)	298
DdeI	CTNAG	3 cut(s)	202, 254, 424
EaeI	YGGCCR	1 cut(s)	311
Eam1104I	CTCTTC	1 cut(s)	98
EarI	CTCTTC	1 cut(s)	98
Eco130I	CCWWGG	2 cut(s)	275, 552
Eco47I	GGWCC	1 cut(s)	175
EcoRII	CCWGG	1 cut(s)	116
EcoT14I	CCWWGG	2 cut(s)	275, 552
ErhI	CCWWGG	2 cut(s)	275, 552
FaeI	CATG	7 cut(s)	279, 402, 446, 524, 544, 621, 685
FatI	CATG	7 cut(s)	275, 398, 442, 520, 540, 617, 681
FblI	GTMKAC	1 cut(s)	60
Fnu4HI	GCNGC	3 cut(s)	27, 549, 585
FokI	GGATG	2 cut(s)	480, 615
Fsp4HI	GCNGC	3 cut(s)	27, 549, 585
FspBI	CTAG	1 cut(s)	87
GluI	GCNGC	3 cut(s)	27, 549, 585
GsuI	CTGGAG	1 cut(s)	34
HaeIII	GGCC	1 cut(s)	313
HapII	CCGG	1 cut(s)	493
Hin1II	CATG	7 cut(s)	279, 402, 446, 524, 544, 621, 685
HincII	GTYRAC	1 cut(s)	222
HindII	GTYRAC	1 cut(s)	222
HindIII	AAGCTT	3 cut(s)	243, 341, 484
HinfI	GANTC	7 cut(s)	5, 35, 75, 105, 206, 366, 406
HpaI	GTTAAC	1 cut(s)	222
HpaII	CCGG	1 cut(s)	493
HphI	GGTGA	1 cut(s)	106
Hpy166II	GTNNAC	3 cut(s)	61, 222, 282
Hpy188I	TCNGA	2 cut(s)	205, 571
Hpy188III	TCNNGA	3 cut(s)	13, 460, 493
Hpy8I	GTNNAC	3 cut(s)	61, 222, 282
Hpy99I	CGWCG	2 cut(s)	43, 56
HpyAV	CCTTC	3 cut(s)	405, 409, 568
HpyCH4III	ACNGT	1 cut(s)	454
HpyCH4IV	ACGT	1 cut(s)	477
HpyCH4V	TGCA	3 cut(s)	249, 520, 584
HpyF10VI	GCNNNNNNNGC	2 cut(s)	242, 628
HpyF3I	CTNAG	3 cut(s)	202, 254, 424
HpySE526I	ACGT	1 cut(s)	477
Hsp92II	CATG	7 cut(s)	279, 402, 446, 524, 544, 621, 685
Kpn2I	TCCGGA	1 cut(s)	492
KspAI	GTTAAC	1 cut(s)	222
LguI	GCTCTTC	1 cut(s)	98
LmnI	GCTCC	3 cut(s)	15, 157, 577
LpnPI	CCDG	8 cut(s)	45, 103, 115, 130, 295, 473, 506, 530
Lsp1109I	GCAGC	2 cut(s)	535, 596
LweI	GCATC	2 cut(s)	390, 458
MaeI	CTAG	1 cut(s)	87
MaeII	ACGT	1 cut(s)	477
MaeIII	GTNAC	1 cut(s)	478
MboII	GAAGA	6 cut(s)	70, 73, 85, 103, 448, 550
MlsI	TGGCCA	1 cut(s)	313
MluCI	AATT	1 cut(s)	447
MluNI	TGGCCA	1 cut(s)	313
MlyI	GAGTC	4 cut(s)	29, 114, 215, 400
MmeI	TCCRAC	2 cut(s)	52, 202
MnlI	CCTC	1 cut(s)	59
Mox20I	TGGCCA	1 cut(s)	313
MroI	TCCGGA	1 cut(s)	492
MroXI	GAANNNNTTC	1 cut(s)	419
MscI	TGGCCA	1 cut(s)	313
MseI	TTAA	2 cut(s)	221, 635
Msp20I	TGGCCA	1 cut(s)	313
MspI	CCGG	1 cut(s)	493
MspR9I	CCNGG	1 cut(s)	118
Mva1269I	GAATGC	1 cut(s)	249
MvaI	CCWGG	1 cut(s)	118
MwoI	GCNNNNNNNGC	2 cut(s)	242, 628
NcoI	CCATGG	1 cut(s)	275
NlaIII	CATG	7 cut(s)	279, 402, 446, 524, 544, 621, 685
NlaIV	GGNNCC	1 cut(s)	17
PciSI	GCTCTTC	1 cut(s)	98
PctI	GAATGC	1 cut(s)	249
PdmI	GAANNNNTTC	1 cut(s)	419
PfeI	GAWTC	3 cut(s)	5, 75, 366
PflMI	CCANNNNNTGG	1 cut(s)	325
PkrI	GCNGC	3 cut(s)	28, 550, 586
PleI	GAGTC	4 cut(s)	29, 113, 214, 400
PpsI	GAGTC	4 cut(s)	29, 113, 214, 400
Psp6I	CCWGG	1 cut(s)	116
PspGI	CCWGG	1 cut(s)	116
PspN4I	GGNNCC	1 cut(s)	17
PspPI	GGNCC	1 cut(s)	175
RsaI	GTAC	1 cut(s)	299
RsaNI	GTAC	1 cut(s)	298
SapI	GCTCTTC	1 cut(s)	98
SaqAI	TTAA	2 cut(s)	221, 635
SatI	GCNGC	3 cut(s)	27, 549, 585
Sau96I	GGNCC	1 cut(s)	175
ScaI	AGTACT	1 cut(s)	299
SchI	GAGTC	4 cut(s)	29, 114, 215, 400
ScrFI	CCNGG	1 cut(s)	118
SfaNI	GCATC	2 cut(s)	390, 458
SfcI	CTRYAG	1 cut(s)	376
SinI	GGWCC	1 cut(s)	175
Sse9I	AATT	1 cut(s)	447
SsiI	CCGC	2 cut(s)	27, 631
SspI	AATATT	1 cut(s)	566
SspMI	CTAG	1 cut(s)	87
StyD4I	CCNGG	1 cut(s)	116
StyI	CCWWGG	2 cut(s)	275, 552
TaaI	ACNGT	1 cut(s)	454
TaiI	ACGT	1 cut(s)	480
TaqI	TCGA	1 cut(s)	409
TasI	AATT	1 cut(s)	447
TatI	WGTACW	1 cut(s)	297
TauI	GCSGC	1 cut(s)	29
TfiI	GAWTC	3 cut(s)	5, 75, 366
Tru1I	TTAA	2 cut(s)	221, 635
Tru9I	TTAA	2 cut(s)	221, 635
TscAI	CASTG	1 cut(s)	432
TseI	GCWGC	2 cut(s)	548, 584
TspDTI	ATGAA	2 cut(s)	529, 606
TspRI	CASTG	1 cut(s)	432
Van91I	CCANNNNNTGG	1 cut(s)	325
VpaK11BI	GGWCC	1 cut(s)	175
XcmI	CCANNNNNNNNNTGG	1 cut(s)	133
XmiI	GTMKAC	1 cut(s)	60
XmnI	GAANNNNTTC	1 cut(s)	419
XspI	CTAG	1 cut(s)	87
ZrmI	AGTACT	1 cut(s)	299

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.