Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0010380

Physical Location & Seq

Genomic Coordinates Reverse (-)

15028581 .. 15033005

Gene Structure 4425 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G125600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

ATGGAATCGTTCTGGAGCCACAATGGCGCACCAGACGCTTGGCACTTCCTCGTCGTTATCTACTTCGCTTTTGGGTTTTTGGCTGCTCGGCTCTTTTTTGACAGATTCATCTTTTGCAAAATTGCCATCTGGTTGTTGAGCAAGGGATCTGCTCCATTGAAGCTCGATATGGCTACACGGGCAAAGGTTGTTAAATGTTCAGAGTCACTTTGGAAGCTAGCATACTATGCCACTGTTGAAGCATGCATTCTCAAGATAAGCTACCAGGAGCCATGGTTCAGAGATACAAAAGAGTACTTTAAAGGCTGGCCAAACCAGGAGTTGGGGCTTCCCCTAAAGCTTTTGTATATGGGTCAATGTGGATTCTATACCTACAGCATTGTTGCCCTCCTTACATGGGAGACTCGAAGGAAGGATTTCTCAGTGATGATGGGTCACCATGTAATTACTGTTCTCCTGATTGGGTTCTCATACATTACGAGCTTTTTTCGGATTGGCTCAATCATTCTTGCCCTGCATGATGCGAGTGATGTATTTTTGGAAGCTGCCAAGGTTTTCAAGTATTCTGAGAAGGAGCTTGCCGCAAGTGTGTTATTTGGATTTTTTGCTGTTTCGTGGCTCATACTGAGGCTAATATTCTTCCCTTTCTGGGTTATAAGGTCATCAAGCTATGACCTTATTGACTGCTTGGATCTCTCGAAGCCTGCTTCCAGAGCTCTGTACTATGTGTTCAATACAATGTTACTGATGCTGTTTGTGTTCCACTTATACTGGTGGGTTATGATATGTGCAATGATAAGAAGACAGCTGAAAAATAGAGGAAAAGTTGGAGAAGATATAAGATCTGATTCAGAGGATGATGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001676 GO:0002238 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0005886 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006643 GO:0006665 GO:0006672 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0010033 GO:0012505 GO:0016020 GO:0016053 GO:0016410 GO:0016740 GO:0016746 GO:0016747 GO:0019752 GO:0030148 GO:0032787 GO:0034641 GO:0042221 GO:0042759 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046467 GO:0046513 GO:0050291 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:0071944 GO:0072330 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00600 ko01100 ko04071 map00600 map01100 map04071

Pfam Domains

Protein Families

TRAM_LAG1_CLN8

Protein Analysis

289

Amino Acids

33.65

Weight (kDa)

8.62

Isoelectric Point (pI)

33.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010380)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19260
fragaria_vesca	FvH4_2g06020 FvH4_2g06020 FvH4_2g06020 FvH4_2g06020 FvH4_2g06020
malus_domestica	MD00G1035400.v1.1 MD05G1081300.v1.1
prunus_persica	Prupe.8G125600_v2.0.a1
pyrus_communis	pycom05g07470 pycom10g07860
rosa_chinensis	RchiOBHm_Chr6g0257331
rosa_laevigata	RLG00000014688
rosa_multiflora	Rmu_sc0000820.1_g000006
rosa_roxburghii	Rroxscaffold_7G00208620
rosa_rugosa	Rorug05G0573500 Rorug05G0573600
rosa_samantha	Rh6AG090800 Rh6CG078600 Rh6DG074400
rosa_wichuraiana	Rw6G007920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	656
AccB7I	CCANNNNNTGG	1 cut(s)	322
AciI	CCGC	1 cut(s)	582
AclWI	GGATC	2 cut(s)	154, 699
AcoI	YGGCCR	1 cut(s)	308
AfaI	GTAC	2 cut(s)	296, 722
AfiI	CCNNNNNNNGG	3 cut(s)	322, 397, 649
AgsI	TTSAA	4 cut(s)	160, 239, 559, 733
AjnI	CCWGG	2 cut(s)	264, 315
AloI	GAACNNNNNNTCC	2 cut(s)	260, 292
Alw21I	GWGCWC	1 cut(s)	718
Alw26I	GTCTC	1 cut(s)	395
AlwI	GGATC	2 cut(s)	154, 699
AoxI	GGCC	1 cut(s)	308
ApeKI	GCWGC	2 cut(s)	83, 545
Asp700I	GAANNNNTTC	1 cut(s)	416
AspLEI	GCGC	1 cut(s)	29
AsuHPI	GGTGA	1 cut(s)	428
AsuNHI	GCTAGC	1 cut(s)	217
BalI	TGGCCA	1 cut(s)	310
BanII	GRGCYC	1 cut(s)	718
BarI	GAAGNNNNNNTAC	2 cut(s)	206, 238
BbsI	GAAGAC	1 cut(s)	808
Bbv12I	GWGCWC	1 cut(s)	718
BbvI	GCAGC	2 cut(s)	70, 532
BccI	CCATC	2 cut(s)	134, 424
BciT130I	CCWGG	2 cut(s)	266, 317
BcoDI	GTCTC	1 cut(s)	395
BfaI	CTAG	1 cut(s)	218
BfmI	CTRYAG	1 cut(s)	373
BglI	GCCNNNNNGGC	1 cut(s)	24
BglII	AGATCT	1 cut(s)	842
BisI	GCNGC	3 cut(s)	84, 546, 582
BlsI	GCNGC	3 cut(s)	85, 547, 583
BmcAI	AGTACT	1 cut(s)	296
Bme1390I	CCNGG	2 cut(s)	266, 317
BmiI	GGNNCC	2 cut(s)	17, 270
BmrFI	CCNGG	2 cut(s)	266, 317
BmsI	GCATC	2 cut(s)	511, 738
BmtI	GCTAGC	1 cut(s)	221
BpiI	GAAGAC	1 cut(s)	808
BpmI	CTGGAG	1 cut(s)	34
BpuEI	CTTGAG	1 cut(s)	236
BsaJI	CCNNGG	2 cut(s)	272, 549
BsaXI	ACNNNNNCTCC	2 cut(s)	260, 290
Bsc4I	CCNNNNNNNGG	3 cut(s)	322, 397, 649
Bse1I	ACTGG	1 cut(s)	776
Bse3DI	GCAATG	1 cut(s)	798
BseBI	CCWGG	2 cut(s)	266, 317
BseDI	CCNNGG	2 cut(s)	272, 549
BseGI	GGATG	1 cut(s)	862
BseLI	CCNNNNNNNGG	3 cut(s)	322, 397, 649
BseMI	GCAATG	1 cut(s)	798
BseMII	CTCAG	3 cut(s)	435, 558, 617
BseNI	ACTGG	1 cut(s)	776
BseXI	GCAGC	2 cut(s)	70, 532
BshFI	GGCC	1 cut(s)	310
BsiHKAI	GWGCWC	1 cut(s)	718
BslI	CCNNNNNNNGG	3 cut(s)	322, 397, 649
BsmAI	GTCTC	1 cut(s)	395
BsmI	GAATGC	1 cut(s)	246
BsnI	GGCC	1 cut(s)	310
Bsp1286I	GDGCHC	1 cut(s)	718
Bsp143I	GATC	3 cut(s)	146, 691, 842
Bsp19I	CCATGG	1 cut(s)	272
BspACI	CCGC	1 cut(s)	582
BspANI	GGCC	1 cut(s)	310
BspCNI	CTCAG	3 cut(s)	434, 559, 618
BspLI	GGNNCC	2 cut(s)	17, 270
BspOI	GCTAGC	1 cut(s)	221
BspPI	GGATC	2 cut(s)	154, 699
BsrDI	GCAATG	1 cut(s)	798
BsrI	ACTGG	1 cut(s)	776
BssECI	CCNNGG	2 cut(s)	272, 549
BssMI	GATC	3 cut(s)	146, 691, 842
BssT1I	CCWWGG	2 cut(s)	272, 549
Bst2UI	CCWGG	2 cut(s)	266, 317
Bst4CI	ACNGT	2 cut(s)	235, 451
BstAPI	GCANNNNNTGC	1 cut(s)	227
BstC8I	GCNNGC	5 cut(s)	219, 244, 308, 579, 705
BstDEI	CTNAG	3 cut(s)	421, 567, 626
BstDSI	CCRYGG	1 cut(s)	272
BstEII	GGTNACC	1 cut(s)	434
BstF5I	GGATG	1 cut(s)	862
BstHHI	GCGC	1 cut(s)	29
BstKTI	GATC	3 cut(s)	149, 694, 845
BstMAI	GTCTC	1 cut(s)	395
BstMBI	GATC	3 cut(s)	146, 691, 842
BstMWI	GCNNNNNNNGC	5 cut(s)	24, 35, 179, 227, 713
BstNI	CCWGG	2 cut(s)	266, 317
BstNSI	RCATGY	1 cut(s)	246
BstPI	GGTNACC	1 cut(s)	434
BstSCI	CCNGG	2 cut(s)	264, 315
BstSFI	CTRYAG	1 cut(s)	373
BstV1I	GCAGC	2 cut(s)	70, 532
BstV2I	GAAGAC	1 cut(s)	808
BstX2I	RGATCY	3 cut(s)	146, 691, 842
BstXI	CCANNNNNNTGG	1 cut(s)	39
BstYI	RGATCY	3 cut(s)	146, 691, 842
BsuRI	GGCC	1 cut(s)	310
BtgI	CCRYGG	1 cut(s)	272
BtsCI	GGATG	1 cut(s)	862
BtsIMutI	CAGTG	2 cut(s)	231, 429
Cac8I	GCNNGC	5 cut(s)	219, 244, 308, 579, 705
CfoI	GCGC	1 cut(s)	29
CseI	GACGC	1 cut(s)	44
Csp6I	GTAC	2 cut(s)	295, 721
CviAII	CATG	5 cut(s)	243, 273, 396, 440, 518
CviQI	GTAC	2 cut(s)	295, 721
DdeI	CTNAG	3 cut(s)	421, 567, 626
DpnI	GATC	3 cut(s)	148, 693, 844
DpnII	GATC	3 cut(s)	146, 691, 842
DraI	TTTAAA	1 cut(s)	301
EaeI	YGGCCR	1 cut(s)	308
Ecl136II	GAGCTC	1 cut(s)	716
Eco130I	CCWWGG	2 cut(s)	272, 549
Eco24I	GRGCYC	1 cut(s)	718
Eco53kI	GAGCTC	1 cut(s)	716
Eco91I	GGTNACC	1 cut(s)	434
EcoICRI	GAGCTC	1 cut(s)	716
EcoO65I	GGTNACC	1 cut(s)	434
EcoRII	CCWGG	2 cut(s)	264, 315
EcoT14I	CCWWGG	2 cut(s)	272, 549
EcoT22I	ATGCAT	1 cut(s)	248
EcoT38I	GRGCYC	1 cut(s)	718
ErhI	CCWWGG	2 cut(s)	272, 549
FaeI	CATG	5 cut(s)	246, 276, 399, 443, 521
FatI	CATG	5 cut(s)	242, 272, 395, 439, 517
Fnu4HI	GCNGC	3 cut(s)	84, 546, 582
FriOI	GRGCYC	1 cut(s)	718
Fsp4HI	GCNGC	3 cut(s)	84, 546, 582
FspBI	CTAG	1 cut(s)	218
GlaI	GCGC	1 cut(s)	28
GluI	GCNGC	3 cut(s)	84, 546, 582
GsuI	CTGGAG	1 cut(s)	34
HaeIII	GGCC	1 cut(s)	310
HgaI	GACGC	1 cut(s)	44
HhaI	GCGC	1 cut(s)	29
Hin1II	CATG	5 cut(s)	246, 276, 399, 443, 521
Hin6I	GCGC	1 cut(s)	27
HinP1I	GCGC	1 cut(s)	27
HindIII	AAGCTT	1 cut(s)	338
HinfI	GANTC	6 cut(s)	5, 105, 203, 363, 403, 848
HphI	GGTGA	1 cut(s)	428
Hpy188I	TCNGA	6 cut(s)	202, 281, 492, 568, 847, 853
Hpy188III	TCNNGA	5 cut(s)	13, 253, 457, 697, 711
Hpy99I	CGWCG	1 cut(s)	56
HpyAV	CCTTC	3 cut(s)	402, 406, 565
HpyCH4III	ACNGT	2 cut(s)	235, 451
HpyCH4V	TGCA	4 cut(s)	117, 246, 517, 791
HpyF10VI	GCNNNNNNNGC	5 cut(s)	24, 35, 179, 227, 713
HpyF3I	CTNAG	3 cut(s)	421, 567, 626
Hsp92II	CATG	5 cut(s)	246, 276, 399, 443, 521
HspAI	GCGC	1 cut(s)	27
Kzo9I	GATC	3 cut(s)	146, 691, 842
LmnI	GCTCC	4 cut(s)	15, 157, 268, 574
Lsp1109I	GCAGC	2 cut(s)	70, 532
LweI	GCATC	2 cut(s)	511, 738
MaeI	CTAG	1 cut(s)	218
MaeIII	GTNAC	3 cut(s)	204, 434, 741
MalI	GATC	3 cut(s)	148, 693, 844
MboI	GATC	3 cut(s)	146, 691, 842
MboII	GAAGA	3 cut(s)	631, 813, 845
MflI	RGATCY	3 cut(s)	146, 691, 842
MhlI	GDGCHC	1 cut(s)	718
MlsI	TGGCCA	1 cut(s)	310
MluCI	AATT	2 cut(s)	120, 444
MluNI	TGGCCA	1 cut(s)	310
MlyI	GAGTC	2 cut(s)	212, 397
MmeI	TCCRAC	1 cut(s)	808
MnlI	CCTC	5 cut(s)	59, 398, 621, 812, 847
Mox20I	TGGCCA	1 cut(s)	310
Mph1103I	ATGCAT	1 cut(s)	248
MroXI	GAANNNNTTC	1 cut(s)	416
MscI	TGGCCA	1 cut(s)	310
MseI	TTAA	2 cut(s)	192, 300
Msp20I	TGGCCA	1 cut(s)	310
MspA1I	CMGCKG	1 cut(s)	808
MspR9I	CCNGG	2 cut(s)	266, 317
Mva1269I	GAATGC	1 cut(s)	246
MvaI	CCWGG	2 cut(s)	266, 317
MwoI	GCNNNNNNNGC	5 cut(s)	24, 35, 179, 227, 713
NcoI	CCATGG	1 cut(s)	272
NdeII	GATC	3 cut(s)	146, 691, 842
NheI	GCTAGC	1 cut(s)	217
NlaIII	CATG	5 cut(s)	246, 276, 399, 443, 521
NlaIV	GGNNCC	2 cut(s)	17, 270
NmeAIII	GCCGAG	1 cut(s)	67
NmuCI	GTSAC	2 cut(s)	204, 434
NsiI	ATGCAT	1 cut(s)	248
NspI	RCATGY	1 cut(s)	246
PaeI	GCATGC	1 cut(s)	246
PctI	GAATGC	1 cut(s)	246
PdmI	GAANNNNTTC	1 cut(s)	416
PfeI	GAWTC	4 cut(s)	5, 105, 363, 848
PflMI	CCANNNNNTGG	1 cut(s)	322
PkrI	GCNGC	3 cut(s)	85, 547, 583
PleI	GAGTC	2 cut(s)	211, 397
PpsI	GAGTC	2 cut(s)	211, 397
PsiI	TTATAA	1 cut(s)	656
Psp124BI	GAGCTC	1 cut(s)	718
Psp6I	CCWGG	2 cut(s)	264, 315
PspEI	GGTNACC	1 cut(s)	434
PspGI	CCWGG	2 cut(s)	264, 315
PspN4I	GGNNCC	2 cut(s)	17, 270
PsrI	GAACNNNNNNTAC	4 cut(s)	435, 467, 713, 745
PsuI	RGATCY	3 cut(s)	146, 691, 842
PvuII	CAGCTG	1 cut(s)	808
RsaI	GTAC	2 cut(s)	296, 722
RsaNI	GTAC	2 cut(s)	295, 721
SacI	GAGCTC	1 cut(s)	718
SaqAI	TTAA	2 cut(s)	192, 300
SatI	GCNGC	3 cut(s)	84, 546, 582
Sau3AI	GATC	3 cut(s)	146, 691, 842
ScaI	AGTACT	1 cut(s)	296
SchI	GAGTC	2 cut(s)	212, 397
ScrFI	CCNGG	2 cut(s)	266, 317
SduI	GDGCHC	1 cut(s)	718
SfaNI	GCATC	2 cut(s)	511, 738
SfcI	CTRYAG	1 cut(s)	373
SmlI	CTYRAG	1 cut(s)	251
SmoI	CTYRAG	1 cut(s)	251
SphI	GCATGC	1 cut(s)	246
Sse9I	AATT	2 cut(s)	120, 444
SsiI	CCGC	1 cut(s)	582
SspI	AATATT	1 cut(s)	636
SspMI	CTAG	1 cut(s)	218
SstI	GAGCTC	1 cut(s)	718
StyD4I	CCNGG	2 cut(s)	264, 315
StyI	CCWWGG	2 cut(s)	272, 549
TaaI	ACNGT	2 cut(s)	235, 451
TaqI	TCGA	3 cut(s)	165, 406, 698
TasI	AATT	2 cut(s)	120, 444
TatI	WGTACW	2 cut(s)	294, 720
TauI	GCSGC	1 cut(s)	584
TfiI	GAWTC	4 cut(s)	5, 105, 363, 848
Tru1I	TTAA	2 cut(s)	192, 300
Tru9I	TTAA	2 cut(s)	192, 300
TscAI	CASTG	2 cut(s)	238, 429
TseFI	GTSAC	2 cut(s)	204, 434
TseI	GCWGC	2 cut(s)	83, 545
Tsp45I	GTSAC	2 cut(s)	204, 434
TspDTI	ATGAA	1 cut(s)	97
TspRI	CASTG	2 cut(s)	238, 429
Van91I	CCANNNNNTGG	1 cut(s)	322
XceI	RCATGY	1 cut(s)	246
XmnI	GAANNNNTTC	1 cut(s)	416
XspI	CTAG	1 cut(s)	218
ZrmI	AGTACT	1 cut(s)	296
Zsp2I	ATGCAT	1 cut(s)	248

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.