Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0010380

Physical Location & Seq

Genomic Coordinates Reverse (-)

16945871 .. 16950521

Gene Structure 4651 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1081300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

ATGGATTCGTTCTGGAGCCACAATGCCGCCCCGGGCTCATGGGATTTCCTCGTCGCTGTCTACTTCGCTTTCGGCTTTTTCGCTGCTCGCCTCATCTTCGACAGATTCATCTTTCGCAATATTTCCGTCTGGTTGTTGAGGAAGGGATCTGCTTCATTGAAGCTTGATATGGCCACACGGGCAAAGATTGTAAAATGTTCGGAGTCAATGTGGAAGCTTACATACTATGCCACTGTTGAAGCATGCATTCTCAGCATAACCTACCATGAGCCATGGTTCACAGATACAAAAGAGTACTTTAAAGGCTGGCCAAACCAAGAGCTGCGGCTTCCCATAAAGCTTTTCTATATGTGTCAGTGTGGATTCTACAGCTACAGCATTGCTGCCCTCCTTACATGGGAGACTCGAAGGAAGGATTTCTCAGTGATGATGTCTCACCATGTAATTACTGTTCTCCTGATTGGGTTCTCATACATAACAAGCTTTTTTCGGATTGGCTCAATCATTCTTGCCCTGCACGATGGAAGTGACGTATTTATGGAAGCTGCCAAGGTTTTCAAGTATTCTGAGAAGGAGCTTGCGGCAAGTGTGTTCTTTGGATTTTTTGCTGTTTCGTGGGCCATACTGCGGTTAATATTCTTCCCTTTCTGGGTCATAAGTGCATCAAGCTATGATCTTTGTGACTGCTTGGATCTATCGAAGCCCTCTCCCAGAGCTCTGTATTATGCATTCAATACAATGTTACTGATGCTTTTTGTGTTCCACATATACTGGTGGGTTATGATTTGTTCAATGATAAGGAGACAGGTGAACAATAGAGGACAAGTTGGAGAAGATATTAGATCTGATTCAGAGGACGATGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001676 GO:0002238 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0005886 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006643 GO:0006665 GO:0006672 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0010033 GO:0012505 GO:0016020 GO:0016053 GO:0016410 GO:0016740 GO:0016746 GO:0016747 GO:0019752 GO:0030148 GO:0032787 GO:0034641 GO:0042221 GO:0042759 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046467 GO:0046513 GO:0050291 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:0071944 GO:0072330 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00600 ko01100 ko04071 map00600 map01100 map04071

Pfam Domains

Protein Families

TRAM_LAG1_CLN8

Protein Analysis

289

Amino Acids

33.68

Weight (kDa)

7.59

Isoelectric Point (pI)

39.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TRAM_LAG1_CLN8	PF03798	65 - 263	1.4e-47	TLC domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010380)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19260
fragaria_vesca	FvH4_2g06020 FvH4_2g06020 FvH4_2g06020 FvH4_2g06020 FvH4_2g06020
malus_domestica	MD00G1035400.v1.1 MD05G1081300.v1.1
prunus_persica	Prupe.8G125600_v2.0.a1
pyrus_communis	pycom05g07470 pycom10g07860
rosa_chinensis	RchiOBHm_Chr6g0257331
rosa_laevigata	RLG00000014688
rosa_multiflora	Rmu_sc0000820.1_g000006
rosa_roxburghii	Rroxscaffold_7G00208620
rosa_rugosa	Rorug05G0573500 Rorug05G0573600
rosa_samantha	Rh6AG090800 Rh6CG078600 Rh6DG074400
rosa_wichuraiana	Rw6G007920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	60
AciI	CCGC	4 cut(s)	27, 325, 581, 628
AclWI	GGATC	2 cut(s)	154, 699
AcoI	YGGCCR	2 cut(s)	171, 308
AfaI	GTAC	1 cut(s)	296
AfiI	CCNNNNNNNGG	3 cut(s)	397, 627, 649
AgsI	TTSAA	5 cut(s)	160, 239, 559, 733, 792
Alw21I	GWGCWC	1 cut(s)	718
Alw26I	GTCTC	3 cut(s)	395, 438, 796
AlwI	GGATC	2 cut(s)	154, 699
Ama87I	CYCGRG	1 cut(s)	31
AoxI	GGCC	3 cut(s)	171, 308, 618
ApeKI	GCWGC	4 cut(s)	83, 322, 383, 545
Asp700I	GAANNNNTTC	1 cut(s)	416
AspS9I	GGNCC	1 cut(s)	618
AsuC2I	CCSGG	2 cut(s)	32, 33
AsuHPI	GGTGA	2 cut(s)	428, 820
AvaI	CYCGRG	1 cut(s)	31
BalI	TGGCCA	2 cut(s)	173, 310
BanII	GRGCYC	2 cut(s)	38, 718
BarI	GAAGNNNNNNTAC	2 cut(s)	206, 238
Bbv12I	GWGCWC	1 cut(s)	718
BbvI	GCAGC	4 cut(s)	70, 309, 370, 532
BccI	CCATC	1 cut(s)	515
BcnI	CCSGG	2 cut(s)	32, 33
BcoDI	GTCTC	3 cut(s)	395, 438, 796
BfmI	CTRYAG	2 cut(s)	367, 373
BglI	GCCNNNNNGGC	1 cut(s)	179
BglII	AGATCT	1 cut(s)	842
BisI	GCNGC	7 cut(s)	27, 84, 323, 326, 384, 546, 582
BlsI	GCNGC	7 cut(s)	28, 85, 324, 327, 385, 547, 583
BmcAI	AGTACT	1 cut(s)	296
Bme1390I	CCNGG	2 cut(s)	32, 33
BmeT110I	CYCGRG	1 cut(s)	31
BmgT120I	GGNCC	1 cut(s)	618
BmiI	GGNNCC	1 cut(s)	17
BmrFI	CCNGG	2 cut(s)	32, 33
BmsI	GCATC	2 cut(s)	671, 738
BpmI	CTGGAG	1 cut(s)	34
BpuMI	CCSGG	2 cut(s)	32, 33
BsaJI	CCNNGG	4 cut(s)	30, 31, 272, 549
BsaXI	ACNNNNNCTCC	2 cut(s)	194, 224
Bsc4I	CCNNNNNNNGG	3 cut(s)	397, 627, 649
Bse1I	ACTGG	1 cut(s)	776
Bse3DI	GCAATG	1 cut(s)	378
BseDI	CCNNGG	4 cut(s)	30, 31, 272, 549
BseLI	CCNNNNNNNGG	3 cut(s)	397, 627, 649
BseMI	GCAATG	1 cut(s)	378
BseMII	CTCAG	3 cut(s)	265, 435, 558
BseNI	ACTGG	1 cut(s)	776
BseXI	GCAGC	4 cut(s)	70, 309, 370, 532
BsgI	GTGCAG	1 cut(s)	500
BshFI	GGCC	3 cut(s)	173, 310, 620
BsiHKAI	GWGCWC	1 cut(s)	718
BsiHKCI	CYCGRG	1 cut(s)	31
BsiSI	CCGG	1 cut(s)	32
BslI	CCNNNNNNNGG	3 cut(s)	397, 627, 649
BsmAI	GTCTC	3 cut(s)	395, 438, 796
BsmI	GAATGC	2 cut(s)	246, 728
BsnI	GGCC	3 cut(s)	173, 310, 620
BsoBI	CYCGRG	1 cut(s)	31
Bsp1286I	GDGCHC	2 cut(s)	38, 718
Bsp143I	GATC	4 cut(s)	146, 673, 691, 842
Bsp19I	CCATGG	1 cut(s)	272
BspACI	CCGC	4 cut(s)	27, 325, 581, 628
BspANI	GGCC	3 cut(s)	173, 310, 620
BspCNI	CTCAG	3 cut(s)	264, 434, 559
BspLI	GGNNCC	1 cut(s)	17
BspPI	GGATC	2 cut(s)	154, 699
BsrDI	GCAATG	1 cut(s)	378
BsrI	ACTGG	1 cut(s)	776
BssECI	CCNNGG	4 cut(s)	30, 31, 272, 549
BssMI	GATC	4 cut(s)	146, 673, 691, 842
BssT1I	CCWWGG	2 cut(s)	272, 549
Bst4CI	ACNGT	2 cut(s)	235, 451
BstC8I	GCNNGC	4 cut(s)	88, 244, 308, 579
BstDEI	CTNAG	3 cut(s)	251, 421, 567
BstDSI	CCRYGG	1 cut(s)	272
BstKTI	GATC	4 cut(s)	149, 676, 694, 845
BstMAI	GTCTC	3 cut(s)	395, 438, 796
BstMBI	GATC	4 cut(s)	146, 673, 691, 842
BstMWI	GCNNNNNNNGC	2 cut(s)	179, 252
BstNSI	RCATGY	1 cut(s)	246
BstSCI	CCNGG	2 cut(s)	30, 31
BstSFI	CTRYAG	2 cut(s)	367, 373
BstV1I	GCAGC	4 cut(s)	70, 309, 370, 532
BstX2I	RGATCY	3 cut(s)	146, 691, 842
BstYI	RGATCY	3 cut(s)	146, 691, 842
BsuRI	GGCC	3 cut(s)	173, 310, 620
BtgI	CCRYGG	1 cut(s)	272
BtsIMutI	CAGTG	3 cut(s)	231, 362, 429
Cac8I	GCNNGC	4 cut(s)	88, 244, 308, 579
Cfr13I	GGNCC	1 cut(s)	618
Cfr9I	CCCGGG	1 cut(s)	31
Csp6I	GTAC	1 cut(s)	295
CviAII	CATG	6 cut(s)	39, 243, 266, 273, 396, 440
CviQI	GTAC	1 cut(s)	295
DdeI	CTNAG	3 cut(s)	251, 421, 567
DpnI	GATC	4 cut(s)	148, 675, 693, 844
DpnII	GATC	4 cut(s)	146, 673, 691, 842
DraI	TTTAAA	1 cut(s)	301
EaeI	YGGCCR	2 cut(s)	171, 308
Ecl136II	GAGCTC	1 cut(s)	716
Eco130I	CCWWGG	2 cut(s)	272, 549
Eco24I	GRGCYC	2 cut(s)	38, 718
Eco53kI	GAGCTC	1 cut(s)	716
Eco88I	CYCGRG	1 cut(s)	31
EcoICRI	GAGCTC	1 cut(s)	716
EcoT14I	CCWWGG	2 cut(s)	272, 549
EcoT22I	ATGCAT	2 cut(s)	248, 730
EcoT38I	GRGCYC	2 cut(s)	38, 718
ErhI	CCWWGG	2 cut(s)	272, 549
FaeI	CATG	6 cut(s)	42, 246, 269, 276, 399, 443
FatI	CATG	6 cut(s)	38, 242, 265, 272, 395, 439
FblI	GTMKAC	1 cut(s)	60
Fnu4HI	GCNGC	7 cut(s)	27, 84, 323, 326, 384, 546, 582
FriOI	GRGCYC	2 cut(s)	38, 718
Fsp4HI	GCNGC	7 cut(s)	27, 84, 323, 326, 384, 546, 582
GluI	GCNGC	7 cut(s)	27, 84, 323, 326, 384, 546, 582
GsuI	CTGGAG	1 cut(s)	34
HaeIII	GGCC	3 cut(s)	173, 310, 620
HapII	CCGG	1 cut(s)	32
Hin1II	CATG	6 cut(s)	42, 246, 269, 276, 399, 443
HindIII	AAGCTT	4 cut(s)	161, 215, 338, 481
HinfI	GANTC	6 cut(s)	5, 105, 203, 363, 403, 848
HpaII	CCGG	1 cut(s)	32
HphI	GGTGA	2 cut(s)	428, 820
Hpy166II	GTNNAC	3 cut(s)	61, 279, 811
Hpy188I	TCNGA	5 cut(s)	202, 492, 568, 847, 853
Hpy188III	TCNNGA	2 cut(s)	13, 457
Hpy8I	GTNNAC	3 cut(s)	61, 279, 811
Hpy99I	CGWCG	1 cut(s)	56
HpyAV	CCTTC	4 cut(s)	136, 402, 406, 565
HpyCH4III	ACNGT	2 cut(s)	235, 451
HpyCH4IV	ACGT	1 cut(s)	531
HpyCH4V	TGCA	4 cut(s)	246, 517, 662, 728
HpyF10VI	GCNNNNNNNGC	2 cut(s)	179, 252
HpyF3I	CTNAG	3 cut(s)	251, 421, 567
HpySE526I	ACGT	1 cut(s)	531
Hsp92II	CATG	6 cut(s)	42, 246, 269, 276, 399, 443
Kzo9I	GATC	4 cut(s)	146, 673, 691, 842
LmnI	GCTCC	2 cut(s)	15, 574
LpnPI	CCDG	9 cut(s)	45, 115, 292, 470, 527, 634, 724, 757, 791
Lsp1109I	GCAGC	4 cut(s)	70, 309, 370, 532
LweI	GCATC	2 cut(s)	671, 738
MaeII	ACGT	1 cut(s)	531
MaeIII	GTNAC	3 cut(s)	527, 680, 741
MalI	GATC	4 cut(s)	148, 675, 693, 844
MboI	GATC	4 cut(s)	146, 673, 691, 842
MboII	GAAGA	3 cut(s)	88, 631, 845
MflI	RGATCY	3 cut(s)	146, 691, 842
MhlI	GDGCHC	2 cut(s)	38, 718
MlsI	TGGCCA	2 cut(s)	173, 310
MluCI	AATT	1 cut(s)	444
MluNI	TGGCCA	2 cut(s)	173, 310
MlyI	GAGTC	2 cut(s)	212, 397
MmeI	TCCRAC	1 cut(s)	808
MnlI	CCTC	7 cut(s)	59, 101, 132, 398, 715, 812, 847
Mox20I	TGGCCA	2 cut(s)	173, 310
Mph1103I	ATGCAT	2 cut(s)	248, 730
MroXI	GAANNNNTTC	1 cut(s)	416
MscI	TGGCCA	2 cut(s)	173, 310
MseI	TTAA	2 cut(s)	300, 632
Msp20I	TGGCCA	2 cut(s)	173, 310
MspI	CCGG	1 cut(s)	32
MspR9I	CCNGG	2 cut(s)	32, 33
Mva1269I	GAATGC	2 cut(s)	246, 728
MwoI	GCNNNNNNNGC	2 cut(s)	179, 252
NciI	CCSGG	2 cut(s)	32, 33
NcoI	CCATGG	1 cut(s)	272
NdeII	GATC	4 cut(s)	146, 673, 691, 842
NlaIII	CATG	6 cut(s)	42, 246, 269, 276, 399, 443
NlaIV	GGNNCC	1 cut(s)	17
NmuCI	GTSAC	2 cut(s)	527, 680
NsiI	ATGCAT	2 cut(s)	248, 730
NspI	RCATGY	1 cut(s)	246
PaeI	GCATGC	1 cut(s)	246
PctI	GAATGC	2 cut(s)	246, 728
PdmI	GAANNNNTTC	1 cut(s)	416
PfeI	GAWTC	4 cut(s)	5, 105, 363, 848
PkrI	GCNGC	7 cut(s)	28, 85, 324, 327, 385, 547, 583
PleI	GAGTC	2 cut(s)	211, 397
PpsI	GAGTC	2 cut(s)	211, 397
Psp124BI	GAGCTC	1 cut(s)	718
PspN4I	GGNNCC	1 cut(s)	17
PspPI	GGNCC	1 cut(s)	618
PsrI	GAACNNNNNNTAC	2 cut(s)	435, 467
PsuI	RGATCY	3 cut(s)	146, 691, 842
RsaI	GTAC	1 cut(s)	296
RsaNI	GTAC	1 cut(s)	295
SacI	GAGCTC	1 cut(s)	718
SaqAI	TTAA	2 cut(s)	300, 632
SatI	GCNGC	7 cut(s)	27, 84, 323, 326, 384, 546, 582
Sau3AI	GATC	4 cut(s)	146, 673, 691, 842
Sau96I	GGNCC	1 cut(s)	618
ScaI	AGTACT	1 cut(s)	296
SchI	GAGTC	2 cut(s)	212, 397
ScrFI	CCNGG	2 cut(s)	32, 33
SduI	GDGCHC	2 cut(s)	38, 718
SfaNI	GCATC	2 cut(s)	671, 738
SfcI	CTRYAG	2 cut(s)	367, 373
SmaI	CCCGGG	1 cut(s)	33
SphI	GCATGC	1 cut(s)	246
Sse9I	AATT	1 cut(s)	444
SsiI	CCGC	4 cut(s)	27, 325, 581, 628
SspI	AATATT	2 cut(s)	121, 636
SstI	GAGCTC	1 cut(s)	718
StyD4I	CCNGG	2 cut(s)	30, 31
StyI	CCWWGG	2 cut(s)	272, 549
TaaI	ACNGT	2 cut(s)	235, 451
TaiI	ACGT	1 cut(s)	534
TaqI	TCGA	3 cut(s)	99, 406, 698
TasI	AATT	1 cut(s)	444
TatI	WGTACW	1 cut(s)	294
TauI	GCSGC	3 cut(s)	29, 328, 584
TfiI	GAWTC	4 cut(s)	5, 105, 363, 848
Tru1I	TTAA	2 cut(s)	300, 632
Tru9I	TTAA	2 cut(s)	300, 632
TscAI	CASTG	3 cut(s)	238, 362, 429
TseFI	GTSAC	2 cut(s)	527, 680
TseI	GCWGC	4 cut(s)	83, 322, 383, 545
Tsp45I	GTSAC	2 cut(s)	527, 680
TspDTI	ATGAA	2 cut(s)	97, 144
TspGWI	ACGGA	1 cut(s)	115
TspMI	CCCGGG	1 cut(s)	31
TspRI	CASTG	3 cut(s)	238, 362, 429
XceI	RCATGY	1 cut(s)	246
XmaI	CCCGGG	1 cut(s)	31
XmiI	GTMKAC	1 cut(s)	60
XmnI	GAANNNNTTC	1 cut(s)	416
ZrmI	AGTACT	1 cut(s)	296
Zsp2I	ATGCAT	2 cut(s)	248, 730

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.