Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0010380

Physical Location & Seq

Genomic Coordinates Reverse (-)

76860905 .. 76862579

Gene Structure 1675 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0573500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGCAAACCGATGATAATTCTAATACAGATCGATGTGATGCAATCCATCCTGCTGATGTTGGACGTAAAGAGGAAAATCCAGATGATGATCGAGGGCTTGGTTTTTTCAGAGACAATCTAAATAGAGTTTCTCGATGGACTCAACCAATAACATACTTAAATTTATATGAAGGTGATAGTTTCACGATGTGTATATTCTGTTTTCCTACTTCCTCAGTCATTCCACTTCATGATCACCCTGGCATGACTGTTTTTAGCAAAGTTCTGTATGGTTCTTTGCATGTGAGAGCTTATGATTGGGTGGAGCCTTCCCACGAAAGCAAGGGATCAAATTACTTTCCAGGAGATGAGATGACTCGAATTTTCTGGAAATCAATCAAGGATAAGCTTATTCTCCCCTTTTTGGATTTGGACATTAAGTACTTTGACCTTGGTCTTCCTCACCGTGATACCACTAATGATAAAGTTACCGTTGAAAGTGCAGAGGCTACTCTTAAGAGGATTAGAATGGGGCTGCTCCAGCTAGAAGTGTTCTGGTGTGGATCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001676 GO:0002238 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0005886 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006643 GO:0006665 GO:0006672 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0010033 GO:0012505 GO:0016020 GO:0016053 GO:0016410 GO:0016740 GO:0016746 GO:0016747 GO:0019752 GO:0030148 GO:0032787 GO:0034641 GO:0042221 GO:0042759 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046467 GO:0046513 GO:0050291 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:0071944 GO:0072330 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00600 ko01100 ko04071 map00600 map01100 map04071

Pfam Domains

Protein Families

TRAM_LAG1_CLN8

Protein Analysis

182

Amino Acids

21.0

Weight (kDa)

5.17

Isoelectric Point (pI)

24.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PCO_ADO	PF07847	13 - 110	4.5e-33	PCO_ADO

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0010380)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19260
fragaria_vesca	FvH4_2g06020 FvH4_2g06020 FvH4_2g06020 FvH4_2g06020 FvH4_2g06020
malus_domestica	MD00G1035400.v1.1 MD05G1081300.v1.1
prunus_persica	Prupe.8G125600_v2.0.a1
pyrus_communis	pycom05g07470 pycom10g07860
rosa_chinensis	RchiOBHm_Chr6g0257331
rosa_laevigata	RLG00000014688
rosa_multiflora	Rmu_sc0000820.1_g000006
rosa_roxburghii	Rroxscaffold_7G00208620
rosa_rugosa	Rorug05G0573500 Rorug05G0573600
rosa_samantha	Rh6AG090800 Rh6CG078600 Rh6DG074400
rosa_wichuraiana	Rw6G007920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	334, 537
AcsI	RAATTY	2 cut(s)	160, 360
AdeI	CACNNNGTG	1 cut(s)	189
AfaI	GTAC	1 cut(s)	422
AfiI	CCNNNNNNNGG	1 cut(s)	403
AflII	CTTAAG	1 cut(s)	494
AgsI	TTSAA	1 cut(s)	476
AjnI	CCWGG	2 cut(s)	238, 340
AluBI	AGCT	3 cut(s)	290, 388, 523
AluI	AGCT	3 cut(s)	290, 388, 523
Alw26I	GTCTC	1 cut(s)	105
AlwI	GGATC	2 cut(s)	334, 537
ApeKI	GCWGC	1 cut(s)	514
ApoI	RAATTY	2 cut(s)	160, 360
AsuHPI	GGTGA	3 cut(s)	185, 227, 434
BamHI	GGATCC	1 cut(s)	542
BbsI	GAAGAC	1 cut(s)	428
BbvI	GCAGC	1 cut(s)	501
BccI	CCATC	2 cut(s)	54, 129
BciT130I	CCWGG	2 cut(s)	240, 342
BclI	TGATCA	1 cut(s)	232
BcoDI	GTCTC	1 cut(s)	105
BfaI	CTAG	1 cut(s)	524
BfrI	CTTAAG	1 cut(s)	494
BisI	GCNGC	1 cut(s)	515
BlsI	GCNGC	1 cut(s)	516
BmcAI	AGTACT	1 cut(s)	422
Bme1390I	CCNGG	2 cut(s)	240, 342
BmiI	GGNNCC	2 cut(s)	306, 544
BmrFI	CCNGG	2 cut(s)	240, 342
BmsI	GCATC	1 cut(s)	28
BoxI	GACNNNNGTC	1 cut(s)	432
BpiI	GAAGAC	1 cut(s)	428
BpmI	CTGGAG	1 cut(s)	503
Bsa29I	ATCGAT	1 cut(s)	31
BsaBI	GATNNNNATC	1 cut(s)	87
BsaJI	CCNNGG	2 cut(s)	238, 430
Bsc4I	CCNNNNNNNGG	1 cut(s)	403
Bse8I	GATNNNNATC	1 cut(s)	87
BseBI	CCWGG	2 cut(s)	240, 342
BseCI	ATCGAT	1 cut(s)	31
BseDI	CCNNGG	2 cut(s)	238, 430
BseGI	GGATG	1 cut(s)	46
BseJI	GATNNNNATC	1 cut(s)	87
BseLI	CCNNNNNNNGG	1 cut(s)	403
BseMII	CTCAG	1 cut(s)	228
BseXI	GCAGC	1 cut(s)	501
BsgI	GTGCAG	1 cut(s)	501
BshVI	ATCGAT	1 cut(s)	31
BslI	CCNNNNNNNGG	1 cut(s)	403
BsmAI	GTCTC	1 cut(s)	105
Bsp143I	GATC	5 cut(s)	28, 88, 232, 326, 542
BspCNI	CTCAG	1 cut(s)	227
BspDI	ATCGAT	1 cut(s)	31
BspHI	TCATGA	1 cut(s)	229
BspLI	GGNNCC	2 cut(s)	306, 544
BspPI	GGATC	2 cut(s)	334, 537
BspTI	CTTAAG	1 cut(s)	494
BssECI	CCNNGG	2 cut(s)	238, 430
BssMI	GATC	5 cut(s)	28, 88, 232, 326, 542
BssT1I	CCWWGG	1 cut(s)	430
Bst2UI	CCWGG	2 cut(s)	240, 342
Bst4CI	ACNGT	3 cut(s)	250, 446, 472
BstAFI	CTTAAG	1 cut(s)	494
BstDEI	CTNAG	1 cut(s)	214
BstF5I	GGATG	1 cut(s)	46
BstKTI	GATC	5 cut(s)	31, 91, 235, 329, 545
BstMAI	GTCTC	1 cut(s)	105
BstMBI	GATC	5 cut(s)	28, 88, 232, 326, 542
BstMWI	GCNNNNNNNGC	1 cut(s)	520
BstNI	CCWGG	2 cut(s)	240, 342
BstNSI	RCATGY	1 cut(s)	284
BstPAI	GACNNNNGTC	1 cut(s)	432
BstSCI	CCNGG	2 cut(s)	238, 340
BstV1I	GCAGC	1 cut(s)	501
BstV2I	GAAGAC	1 cut(s)	428
BstX2I	RGATCY	1 cut(s)	542
BstYI	RGATCY	1 cut(s)	542
Bsu15I	ATCGAT	1 cut(s)	31
BsuTUI	ATCGAT	1 cut(s)	31
BtsCI	GGATG	1 cut(s)	46
CciI	TCATGA	1 cut(s)	229
ClaI	ATCGAT	1 cut(s)	31
Csp6I	GTAC	1 cut(s)	421
CviAII	CATG	3 cut(s)	230, 244, 281
CviJI	RGCY	7 cut(s)	97, 290, 307, 388, 488, 514, 523
CviKI_1	RGCY	7 cut(s)	97, 290, 307, 388, 488, 514, 523
CviQI	GTAC	1 cut(s)	421
DdeI	CTNAG	1 cut(s)	214
DpnI	GATC	5 cut(s)	30, 90, 234, 328, 544
DpnII	GATC	5 cut(s)	28, 88, 232, 326, 542
DraIII	CACNNNGTG	1 cut(s)	189
Eco130I	CCWWGG	1 cut(s)	430
EcoRII	CCWGG	2 cut(s)	238, 340
EcoT14I	CCWWGG	1 cut(s)	430
ErhI	CCWWGG	1 cut(s)	430
FaeI	CATG	3 cut(s)	233, 247, 284
FaiI	YATR	9 cut(s)	154, 166, 168, 194, 231, 245, 270, 282, 294
FatI	CATG	3 cut(s)	229, 243, 280
FbaI	TGATCA	1 cut(s)	232
Fnu4HI	GCNGC	1 cut(s)	515
FokI	GGATG	1 cut(s)	33
Fsp4HI	GCNGC	1 cut(s)	515
FspBI	CTAG	1 cut(s)	524
GluI	GCNGC	1 cut(s)	515
GsuI	CTGGAG	1 cut(s)	503
Hin1II	CATG	3 cut(s)	233, 247, 284
HindIII	AAGCTT	1 cut(s)	386
HinfI	GANTC	2 cut(s)	139, 355
HphI	GGTGA	3 cut(s)	185, 227, 434
Hpy188I	TCNGA	1 cut(s)	110
Hpy188III	TCNNGA	5 cut(s)	80, 132, 184, 230, 367
HpyAV	CCTTC	2 cut(s)	164, 318
HpyCH4III	ACNGT	3 cut(s)	250, 446, 472
HpyCH4IV	ACGT	1 cut(s)	64
HpyCH4V	TGCA	4 cut(s)	4, 41, 280, 482
HpyF10VI	GCNNNNNNNGC	1 cut(s)	520
HpyF3I	CTNAG	1 cut(s)	214
HpySE526I	ACGT	1 cut(s)	64
Hsp92II	CATG	3 cut(s)	233, 247, 284
Ksp22I	TGATCA	1 cut(s)	232
Kzo9I	GATC	5 cut(s)	28, 88, 232, 326, 542
LmnI	GCTCC	2 cut(s)	304, 522
LpnPI	CCDG	9 cut(s)	63, 93, 225, 252, 327, 352, 354, 520, 533
Lsp1109I	GCAGC	1 cut(s)	501
LweI	GCATC	1 cut(s)	28
MaeI	CTAG	1 cut(s)	524
MaeII	ACGT	1 cut(s)	64
MaeIII	GTNAC	1 cut(s)	466
MalI	GATC	5 cut(s)	30, 90, 234, 328, 544
MboI	GATC	5 cut(s)	28, 88, 232, 326, 542
MboII	GAAGA	1 cut(s)	428
MflI	RGATCY	1 cut(s)	542
MluCI	AATT	4 cut(s)	16, 160, 331, 360
MlyI	GAGTC	2 cut(s)	133, 349
MmeI	TCCRAC	1 cut(s)	40
MnlI	CCTC	6 cut(s)	64, 86, 223, 450, 478, 492
MseI	TTAA	3 cut(s)	158, 417, 495
MspCI	CTTAAG	1 cut(s)	494
MspR9I	CCNGG	2 cut(s)	240, 342
MvaI	CCWGG	2 cut(s)	240, 342
MwoI	GCNNNNNNNGC	1 cut(s)	520
NdeII	GATC	5 cut(s)	28, 88, 232, 326, 542
NlaIII	CATG	3 cut(s)	233, 247, 284
NlaIV	GGNNCC	2 cut(s)	306, 544
NspI	RCATGY	1 cut(s)	284
PagI	TCATGA	1 cut(s)	229
PfoI	TCCNGGA	1 cut(s)	340
PkrI	GCNGC	1 cut(s)	516
PleI	GAGTC	2 cut(s)	133, 349
PpsI	GAGTC	2 cut(s)	133, 349
PshAI	GACNNNNGTC	1 cut(s)	432
Psp6I	CCWGG	2 cut(s)	238, 340
PspGI	CCWGG	2 cut(s)	238, 340
PspN4I	GGNNCC	2 cut(s)	306, 544
PsuI	RGATCY	1 cut(s)	542
RsaI	GTAC	1 cut(s)	422
RsaNI	GTAC	1 cut(s)	421
SaqAI	TTAA	3 cut(s)	158, 417, 495
SatI	GCNGC	1 cut(s)	515
Sau3AI	GATC	5 cut(s)	28, 88, 232, 326, 542
ScaI	AGTACT	1 cut(s)	422
SchI	GAGTC	2 cut(s)	133, 349
ScrFI	CCNGG	2 cut(s)	240, 342
SetI	ASST	6 cut(s)	67, 175, 292, 390, 432, 525
SfaNI	GCATC	1 cut(s)	28
SmlI	CTYRAG	1 cut(s)	494
SmoI	CTYRAG	1 cut(s)	494
Sse9I	AATT	4 cut(s)	16, 160, 331, 360
SspMI	CTAG	1 cut(s)	524
StyD4I	CCNGG	2 cut(s)	238, 340
StyI	CCWWGG	1 cut(s)	430
TaaI	ACNGT	3 cut(s)	250, 446, 472
TaiI	ACGT	1 cut(s)	67
TaqI	TCGA	4 cut(s)	31, 91, 133, 358
TasI	AATT	4 cut(s)	16, 160, 331, 360
TatI	WGTACW	1 cut(s)	420
Tru1I	TTAA	3 cut(s)	158, 417, 495
Tru9I	TTAA	3 cut(s)	158, 417, 495
TseI	GCWGC	1 cut(s)	514
TspDTI	ATGAA	2 cut(s)	183, 218
Vha464I	CTTAAG	1 cut(s)	494
XapI	RAATTY	2 cut(s)	160, 360
XceI	RCATGY	1 cut(s)	284
XspI	CTAG	1 cut(s)	524
ZrmI	AGTACT	1 cut(s)	422

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.