Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0010380

Physical Location & Seq

Genomic Coordinates Reverse (-)

6184376 .. 6191521

Gene Structure 7146 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1035400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

ATGGATTCGTTCTGGAGCCACAATGTGGCACCGGACTCATGGGATTTCCTCATCGCTGTCTACTTCGCTTTCGGATTTTTCGTTGCTCGCCTCTTCTTTGACAGATTCATCTTTCGCAAAATTTCTGTCTGGTTGTTGAGGAAGGGATCTGCTCCATTGAAGCTTGATATGGCCACGCTGGCAAAGATTGTAAAATGTTCGGAGTCAATGTGGAAGCTAACATACTATGCCGCTGTTGAAGCATGCATTCTTAGCATAGGCTACCATGAGCCTTGGTTCAGAGATACAAAAGAGTACTTTAAAGGCTGGCCAAACCAAGAGCTGGGGCTTCCCCTAAAGCTTTTCTATATGTGTCAGTTGGGATTCTACAGCTACAGCATTGCTGCCCTCCTTACATGGGAGACTCGAAGGAAGGATTTCTCAGTGATGATGTCTCACCATGTAATTACTGTTCTTCTAATTGGGATCTCATACATAACAAGCTTTTTTCGGATTGGCTCAATCATTCTTGCCCTGCATGACGGAAGTGACGTATTTATGGAAAGTGCCAAGGTTTTCAAGTATTCTGAGAAGGAGCTCGCGGCAAGTGTGTTCTTTGGATTTTTTGCTGTTTCATGGGTCATACTGCGGTTAATATTCTTCCCCTTCTGGGTCATAAGCGCATCAAGCTATGATCTTCGTGACTGCTTGGATCTATCGAAGCCCTCCCCCAAAGCTCTGTATTATGCATTCAATACAATGTTACTGACCCTTTTTGTGTTCCACATATACTGGTGGGTTATGATTTGCTCAATGATAAGGAGACAGCTGAACAATAGAGGAAAAGTTGGAGAAGATATTAGATCAGATTCAGAGGATGATGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001676 GO:0002238 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0005886 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006643 GO:0006665 GO:0006672 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0010033 GO:0012505 GO:0016020 GO:0016053 GO:0016410 GO:0016740 GO:0016746 GO:0016747 GO:0019752 GO:0030148 GO:0032787 GO:0034641 GO:0042221 GO:0042759 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046467 GO:0046513 GO:0050291 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:0071944 GO:0072330 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00600 ko01100 ko04071 map00600 map01100 map04071

Pfam Domains

Protein Families

TRAM_LAG1_CLN8

Protein Analysis

289

Amino Acids

33.74

Weight (kDa)

8.18

Isoelectric Point (pI)

38.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TRAM_LAG1_CLN8	PF03798	65 - 263	6.7e-49	TLC domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010380)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19260
fragaria_vesca	FvH4_2g06020 FvH4_2g06020 FvH4_2g06020 FvH4_2g06020 FvH4_2g06020
malus_domestica	MD00G1035400.v1.1 MD05G1081300.v1.1
prunus_persica	Prupe.8G125600_v2.0.a1
pyrus_communis	pycom05g07470 pycom10g07860
rosa_chinensis	RchiOBHm_Chr6g0257331
rosa_laevigata	RLG00000014688
rosa_multiflora	Rmu_sc0000820.1_g000006
rosa_roxburghii	Rroxscaffold_7G00208620
rosa_rugosa	Rorug05G0573500 Rorug05G0573600
rosa_samantha	Rh6AG090800 Rh6CG078600 Rh6DG074400
rosa_wichuraiana	Rw6G007920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	28
AccB7I	CCANNNNNTGG	2 cut(s)	25, 322
AccI	GTMKAC	1 cut(s)	60
AccII	CGCG	1 cut(s)	581
AciI	CCGC	3 cut(s)	231, 581, 628
AclWI	GGATC	3 cut(s)	154, 473, 699
AcoI	YGGCCR	2 cut(s)	171, 308
AcsI	RAATTY	1 cut(s)	120
AdeI	CACNNNGTG	1 cut(s)	25
AfaI	GTAC	1 cut(s)	296
AfiI	CCNNNNNNNGG	4 cut(s)	25, 322, 397, 649
AgsI	TTSAA	4 cut(s)	160, 239, 559, 733
Alw21I	GWGCWC	1 cut(s)	579
Alw26I	GTCTC	3 cut(s)	395, 438, 796
AlwI	GGATC	3 cut(s)	154, 473, 699
AoxI	GGCC	2 cut(s)	171, 308
ApeKI	GCWGC	1 cut(s)	383
ApoI	RAATTY	1 cut(s)	120
ArsI	GACNNNNNNTTYG	2 cut(s)	111, 143
Asp700I	GAANNNNTTC	1 cut(s)	416
AspLEI	GCGC	1 cut(s)	662
AsuHPI	GGTGA	1 cut(s)	428
BalI	TGGCCA	2 cut(s)	173, 310
BanI	GGYRCC	1 cut(s)	28
BanII	GRGCYC	1 cut(s)	579
BarI	GAAGNNNNNNTAC	2 cut(s)	206, 238
Bbv12I	GWGCWC	1 cut(s)	579
BbvI	GCAGC	1 cut(s)	370
BcoDI	GTCTC	3 cut(s)	395, 438, 796
BfmI	CTRYAG	2 cut(s)	367, 373
BglI	GCCNNNNNGGC	1 cut(s)	179
BisI	GCNGC	3 cut(s)	231, 384, 582
BlsI	GCNGC	3 cut(s)	232, 385, 583
BmcAI	AGTACT	1 cut(s)	296
BmiI	GGNNCC	2 cut(s)	17, 30
BmsI	GCATC	1 cut(s)	671
BpmI	CTGGAG	1 cut(s)	34
BsaJI	CCNNGG	2 cut(s)	272, 549
BsaWI	WCCGGW	1 cut(s)	31
BsaXI	ACNNNNNCTCC	2 cut(s)	194, 224
Bsc4I	CCNNNNNNNGG	4 cut(s)	25, 322, 397, 649
Bse1I	ACTGG	1 cut(s)	776
Bse3DI	GCAATG	1 cut(s)	378
BseDI	CCNNGG	2 cut(s)	272, 549
BseGI	GGATG	1 cut(s)	862
BseLI	CCNNNNNNNGG	4 cut(s)	25, 322, 397, 649
BseMI	GCAATG	1 cut(s)	378
BseMII	CTCAG	2 cut(s)	435, 558
BseNI	ACTGG	1 cut(s)	776
BseXI	GCAGC	1 cut(s)	370
BseYI	CCCAGC	1 cut(s)	322
Bsh1236I	CGCG	1 cut(s)	581
BshFI	GGCC	2 cut(s)	173, 310
BshNI	GGYRCC	1 cut(s)	28
BsiHKAI	GWGCWC	1 cut(s)	579
BsiSI	CCGG	1 cut(s)	32
BslI	CCNNNNNNNGG	4 cut(s)	25, 322, 397, 649
BsmAI	GTCTC	3 cut(s)	395, 438, 796
BsmI	GAATGC	2 cut(s)	246, 728
BsnI	GGCC	2 cut(s)	173, 310
Bsp1286I	GDGCHC	1 cut(s)	579
Bsp143I	GATC	5 cut(s)	146, 465, 673, 691, 842
BspACI	CCGC	3 cut(s)	231, 581, 628
BspANI	GGCC	2 cut(s)	173, 310
BspCNI	CTCAG	2 cut(s)	434, 559
BspFNI	CGCG	1 cut(s)	581
BspLI	GGNNCC	2 cut(s)	17, 30
BspPI	GGATC	3 cut(s)	154, 473, 699
BspT107I	GGYRCC	1 cut(s)	28
BsrDI	GCAATG	1 cut(s)	378
BsrI	ACTGG	1 cut(s)	776
BssECI	CCNNGG	2 cut(s)	272, 549
BssMI	GATC	5 cut(s)	146, 465, 673, 691, 842
BssT1I	CCWWGG	2 cut(s)	272, 549
Bst4CI	ACNGT	1 cut(s)	451
Bst6I	CTCTTC	1 cut(s)	98
BstC8I	GCNNGC	5 cut(s)	88, 180, 244, 308, 579
BstDEI	CTNAG	3 cut(s)	251, 421, 567
BstF5I	GGATG	1 cut(s)	862
BstFNI	CGCG	1 cut(s)	581
BstHHI	GCGC	1 cut(s)	662
BstKTI	GATC	5 cut(s)	149, 468, 676, 694, 845
BstMAI	GTCTC	3 cut(s)	395, 438, 796
BstMBI	GATC	5 cut(s)	146, 465, 673, 691, 842
BstMWI	GCNNNNNNNGC	4 cut(s)	179, 239, 252, 666
BstNSI	RCATGY	1 cut(s)	246
BstSFI	CTRYAG	2 cut(s)	367, 373
BstUI	CGCG	1 cut(s)	581
BstV1I	GCAGC	1 cut(s)	370
BstX2I	RGATCY	3 cut(s)	146, 465, 691
BstYI	RGATCY	3 cut(s)	146, 465, 691
BsuRI	GGCC	2 cut(s)	173, 310
BtgZI	GCGATG	1 cut(s)	37
BtsCI	GGATG	1 cut(s)	862
BtsIMutI	CAGTG	1 cut(s)	429
Cac8I	GCNNGC	5 cut(s)	88, 180, 244, 308, 579
CfoI	GCGC	1 cut(s)	662
Csp6I	GTAC	1 cut(s)	295
CviAII	CATG	7 cut(s)	39, 243, 266, 396, 440, 518, 615
CviQI	GTAC	1 cut(s)	295
DdeI	CTNAG	3 cut(s)	251, 421, 567
DpnI	GATC	5 cut(s)	148, 467, 675, 693, 844
DpnII	GATC	5 cut(s)	146, 465, 673, 691, 842
DraI	TTTAAA	1 cut(s)	301
DraIII	CACNNNGTG	1 cut(s)	25
EaeI	YGGCCR	2 cut(s)	171, 308
Eam1104I	CTCTTC	1 cut(s)	98
EarI	CTCTTC	1 cut(s)	98
Ecl136II	GAGCTC	1 cut(s)	577
Eco130I	CCWWGG	2 cut(s)	272, 549
Eco24I	GRGCYC	1 cut(s)	579
Eco53kI	GAGCTC	1 cut(s)	577
EcoICRI	GAGCTC	1 cut(s)	577
EcoT14I	CCWWGG	2 cut(s)	272, 549
EcoT22I	ATGCAT	2 cut(s)	248, 730
EcoT38I	GRGCYC	1 cut(s)	579
ErhI	CCWWGG	2 cut(s)	272, 549
FaeI	CATG	7 cut(s)	42, 246, 269, 399, 443, 521, 618
FatI	CATG	7 cut(s)	38, 242, 265, 395, 439, 517, 614
FblI	GTMKAC	1 cut(s)	60
Fnu4HI	GCNGC	3 cut(s)	231, 384, 582
FriOI	GRGCYC	1 cut(s)	579
Fsp4HI	GCNGC	3 cut(s)	231, 384, 582
GlaI	GCGC	1 cut(s)	661
GluI	GCNGC	3 cut(s)	231, 384, 582
GsaI	CCCAGC	1 cut(s)	326
GsuI	CTGGAG	1 cut(s)	34
HaeIII	GGCC	2 cut(s)	173, 310
HapII	CCGG	1 cut(s)	32
HhaI	GCGC	1 cut(s)	662
Hin1II	CATG	7 cut(s)	42, 246, 269, 399, 443, 521, 618
Hin6I	GCGC	1 cut(s)	660
HinP1I	GCGC	1 cut(s)	660
HindIII	AAGCTT	3 cut(s)	161, 338, 481
HinfI	GANTC	7 cut(s)	5, 35, 105, 203, 363, 403, 848
HpaII	CCGG	1 cut(s)	32
HphI	GGTGA	1 cut(s)	428
Hpy166II	GTNNAC	1 cut(s)	61
Hpy188I	TCNGA	7 cut(s)	74, 202, 281, 492, 568, 847, 853
Hpy188III	TCNNGA	2 cut(s)	13, 680
Hpy8I	GTNNAC	1 cut(s)	61
HpyAV	CCTTC	5 cut(s)	136, 402, 406, 565, 655
HpyCH4III	ACNGT	1 cut(s)	451
HpyCH4IV	ACGT	1 cut(s)	531
HpyCH4V	TGCA	3 cut(s)	246, 517, 728
HpyF10VI	GCNNNNNNNGC	4 cut(s)	179, 239, 252, 666
HpyF3I	CTNAG	3 cut(s)	251, 421, 567
HpySE526I	ACGT	1 cut(s)	531
Hsp92II	CATG	7 cut(s)	42, 246, 269, 399, 443, 521, 618
HspAI	GCGC	1 cut(s)	660
Kzo9I	GATC	5 cut(s)	146, 465, 673, 691, 842
LmnI	GCTCC	3 cut(s)	15, 157, 574
LpnPI	CCDG	8 cut(s)	45, 115, 164, 292, 308, 527, 634, 757
Lsp1109I	GCAGC	1 cut(s)	370
LweI	GCATC	1 cut(s)	671
MaeII	ACGT	1 cut(s)	531
MaeIII	GTNAC	3 cut(s)	527, 680, 741
MalI	GATC	5 cut(s)	148, 467, 675, 693, 844
MboI	GATC	5 cut(s)	146, 465, 673, 691, 842
MboII	GAAGA	5 cut(s)	85, 446, 631, 668, 845
MflI	RGATCY	3 cut(s)	146, 465, 691
MhlI	GDGCHC	1 cut(s)	579
MlsI	TGGCCA	2 cut(s)	173, 310
MluCI	AATT	3 cut(s)	120, 444, 459
MluNI	TGGCCA	2 cut(s)	173, 310
MlyI	GAGTC	3 cut(s)	29, 212, 397
MmeI	TCCRAC	1 cut(s)	808
MnlI	CCTC	7 cut(s)	59, 101, 132, 398, 715, 812, 847
Mox20I	TGGCCA	2 cut(s)	173, 310
Mph1103I	ATGCAT	2 cut(s)	248, 730
MroXI	GAANNNNTTC	1 cut(s)	416
MscI	TGGCCA	2 cut(s)	173, 310
MseI	TTAA	2 cut(s)	300, 632
Msp20I	TGGCCA	2 cut(s)	173, 310
MspA1I	CMGCKG	2 cut(s)	233, 808
MspI	CCGG	1 cut(s)	32
Mva1269I	GAATGC	2 cut(s)	246, 728
MvnI	CGCG	1 cut(s)	581
MwoI	GCNNNNNNNGC	4 cut(s)	179, 239, 252, 666
NdeII	GATC	5 cut(s)	146, 465, 673, 691, 842
NlaIII	CATG	7 cut(s)	42, 246, 269, 399, 443, 521, 618
NlaIV	GGNNCC	2 cut(s)	17, 30
NmuCI	GTSAC	2 cut(s)	527, 680
NsiI	ATGCAT	2 cut(s)	248, 730
NspI	RCATGY	1 cut(s)	246
PaeI	GCATGC	1 cut(s)	246
PcsI	WCGNNNNNNNCGW	2 cut(s)	78, 528
PctI	GAATGC	2 cut(s)	246, 728
PdmI	GAANNNNTTC	1 cut(s)	416
PfeI	GAWTC	4 cut(s)	5, 105, 363, 848
PflMI	CCANNNNNTGG	2 cut(s)	25, 322
PkrI	GCNGC	3 cut(s)	232, 385, 583
PleI	GAGTC	3 cut(s)	29, 211, 397
PpsI	GAGTC	3 cut(s)	29, 211, 397
Psp124BI	GAGCTC	1 cut(s)	579
PspFI	CCCAGC	1 cut(s)	322
PspN4I	GGNNCC	2 cut(s)	17, 30
PsrI	GAACNNNNNNTAC	2 cut(s)	435, 467
PsuI	RGATCY	3 cut(s)	146, 465, 691
PvuII	CAGCTG	1 cut(s)	808
RsaI	GTAC	1 cut(s)	296
RsaNI	GTAC	1 cut(s)	295
SacI	GAGCTC	1 cut(s)	579
SaqAI	TTAA	2 cut(s)	300, 632
SatI	GCNGC	3 cut(s)	231, 384, 582
Sau3AI	GATC	5 cut(s)	146, 465, 673, 691, 842
ScaI	AGTACT	1 cut(s)	296
SchI	GAGTC	3 cut(s)	29, 212, 397
SduI	GDGCHC	1 cut(s)	579
SfaNI	GCATC	1 cut(s)	671
SfcI	CTRYAG	2 cut(s)	367, 373
SphI	GCATGC	1 cut(s)	246
Sse9I	AATT	3 cut(s)	120, 444, 459
SsiI	CCGC	3 cut(s)	231, 581, 628
SspI	AATATT	1 cut(s)	636
SstI	GAGCTC	1 cut(s)	579
StyI	CCWWGG	2 cut(s)	272, 549
TaaI	ACNGT	1 cut(s)	451
TaiI	ACGT	1 cut(s)	534
TaqI	TCGA	2 cut(s)	406, 698
TasI	AATT	3 cut(s)	120, 444, 459
TatI	WGTACW	1 cut(s)	294
TauI	GCSGC	2 cut(s)	233, 584
TfiI	GAWTC	4 cut(s)	5, 105, 363, 848
Tru1I	TTAA	2 cut(s)	300, 632
Tru9I	TTAA	2 cut(s)	300, 632
TscAI	CASTG	1 cut(s)	429
TseFI	GTSAC	2 cut(s)	527, 680
TseI	GCWGC	1 cut(s)	383
Tsp45I	GTSAC	2 cut(s)	527, 680
TspDTI	ATGAA	2 cut(s)	97, 603
TspGWI	ACGGA	1 cut(s)	537
TspRI	CASTG	1 cut(s)	429
Van91I	CCANNNNNTGG	2 cut(s)	25, 322
XapI	RAATTY	1 cut(s)	120
XceI	RCATGY	1 cut(s)	246
XmiI	GTMKAC	1 cut(s)	60
XmnI	GAANNNNTTC	1 cut(s)	416
ZrmI	AGTACT	1 cut(s)	296
Zsp2I	ATGCAT	2 cut(s)	248, 730

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.