Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0010380

Physical Location & Seq

Genomic Coordinates Forward (+)

5021708 .. 5029324

Gene Structure 7617 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g06020.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGGAATCGTTCTGGAGCCACAATGCCGCCCCAGACTCGTCGCATTTCCTCGTCGCCGTCTACTTCGCCTTTGGATTCTTCTTCGCTCGGCTCTTCCTTGATAGGTTCATCTTCACCAGGCTTGCCATCTGGATGTCGAGAAAAGGTTCTGCTCCATCGAAGATAGATATGGTCCAACGGGCAAAGATTACGAAATGCTCAGAGTCTATGTGGAAGTTAACATACTATGCAACTGTCGAAGCCTGCATTCTCAGCATAAGCTACCAGGAGCCATGGTTCACAGATACAAGAGAGTACTTCAAAGGATGGCCAAACCAAGAGTTGGGGCTTCCCCTAAAGCTTGTGTATATGTGTCAATGTGGATTCTATACCTACAGTATTGTTGCTCTCCTTACATGGGAAACCCGAAGGAAGGATTTCTCAGTGATGATGTCTCATCATGTAATTACCGTCTTCCTGATTGGAATGTCATACATTACAAGCTTTTTCCGAATTGGCTCAATCATTCTTGCCCTGCATGATGGGAGTGATGTATTCATGGAAGCTGCCAAGGTCTTCAAATATTCTGAGAAGGAGCTTGCAGCAAGTGTGTTCTTTGGGTGTTTTGCTTTTTCATGGCTCATACTGCGGTTAATATACTTCCCCTTCTGGGTCATAAGCTCATCAAGGTCTGCTCTCATGTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001676 GO:0002238 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0005886 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006643 GO:0006665 GO:0006672 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0010033 GO:0012505 GO:0016020 GO:0016053 GO:0016410 GO:0016740 GO:0016746 GO:0016747 GO:0019752 GO:0030148 GO:0032787 GO:0034641 GO:0042221 GO:0042759 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046467 GO:0046513 GO:0050291 GO:0050896 GO:0051704 GO:0051707 GO:0071704 GO:0071944 GO:0072330 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00600 ko01100 ko04071 map00600 map01100 map04071

Pfam Domains

Protein Families

TRAM_LAG1_CLN8

Protein Analysis

229

Amino Acids

26.6

Weight (kDa)

8.93

Isoelectric Point (pI)

39.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TRAM_LAG1_CLN8	PF03798	65 - 223	1.9e-42	TLC domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010380)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19260
fragaria_vesca	FvH4_2g06020 FvH4_2g06020 FvH4_2g06020 FvH4_2g06020 FvH4_2g06020
malus_domestica	MD00G1035400.v1.1 MD05G1081300.v1.1
prunus_persica	Prupe.8G125600_v2.0.a1
pyrus_communis	pycom05g07470 pycom10g07860
rosa_chinensis	RchiOBHm_Chr6g0257331
rosa_laevigata	RLG00000014688
rosa_multiflora	Rmu_sc0000820.1_g000006
rosa_roxburghii	Rroxscaffold_7G00208620
rosa_rugosa	Rorug05G0573500 Rorug05G0573600
rosa_samantha	Rh6AG090800 Rh6CG078600 Rh6DG074400
rosa_wichuraiana	Rw6G007920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	322
AccI	GTMKAC	1 cut(s)	60
AciI	CCGC	2 cut(s)	27, 628
AcoI	YGGCCR	1 cut(s)	308
AfaI	GTAC	1 cut(s)	296
AfiI	CCNNNNNNNGG	4 cut(s)	322, 397, 412, 649
AgsI	TTSAA	2 cut(s)	301, 559
AjnI	CCWGG	2 cut(s)	116, 264
AloI	GAACNNNNNNTCC	2 cut(s)	260, 292
AluBI	AGCT	6 cut(s)	261, 340, 483, 545, 577, 660
AluI	AGCT	6 cut(s)	261, 340, 483, 545, 577, 660
Alw26I	GTCTC	1 cut(s)	438
AoxI	GGCC	1 cut(s)	308
ApeKI	GCWGC	2 cut(s)	545, 581
Asp700I	GAANNNNTTC	2 cut(s)	145, 416
AspS9I	GGNCC	1 cut(s)	172
AsuHPI	GGTGA	1 cut(s)	106
AvaII	GGWCC	1 cut(s)	172
BalI	TGGCCA	1 cut(s)	310
BarI	GAAGNNNNNNTAC	2 cut(s)	206, 238
BbsI	GAAGAC	2 cut(s)	445, 547
BbvI	GCAGC	2 cut(s)	532, 593
BccI	CCATC	4 cut(s)	134, 163, 300, 515
BceAI	ACGGC	1 cut(s)	41
BciT130I	CCWGG	2 cut(s)	118, 266
BcoDI	GTCTC	1 cut(s)	438
BfmI	CTRYAG	1 cut(s)	373
BisI	GCNGC	3 cut(s)	27, 546, 582
BlsI	GCNGC	3 cut(s)	28, 547, 583
BmcAI	AGTACT	1 cut(s)	296
Bme1390I	CCNGG	2 cut(s)	118, 266
Bme18I	GGWCC	1 cut(s)	172
BmgT120I	GGNCC	1 cut(s)	172
BmiI	GGNNCC	2 cut(s)	17, 270
BmrFI	CCNGG	2 cut(s)	118, 266
BpiI	GAAGAC	2 cut(s)	445, 547
BpmI	CTGGAG	1 cut(s)	34
BsaJI	CCNNGG	2 cut(s)	272, 549
BsaXI	ACNNNNNCTCC	2 cut(s)	260, 290
Bsc4I	CCNNNNNNNGG	4 cut(s)	322, 397, 412, 649
BseBI	CCWGG	2 cut(s)	118, 266
BseDI	CCNNGG	2 cut(s)	272, 549
BseGI	GGATG	2 cut(s)	138, 311
BseLI	CCNNNNNNNGG	4 cut(s)	322, 397, 412, 649
BseMII	CTCAG	4 cut(s)	213, 265, 435, 558
BseXI	GCAGC	2 cut(s)	532, 593
BshFI	GGCC	1 cut(s)	310
BslI	CCNNNNNNNGG	4 cut(s)	322, 397, 412, 649
BsmAI	GTCTC	1 cut(s)	438
BsmI	GAATGC	1 cut(s)	246
BsnI	GGCC	1 cut(s)	310
Bsp19I	CCATGG	1 cut(s)	272
BspACI	CCGC	2 cut(s)	27, 628
BspANI	GGCC	1 cut(s)	310
BspCNI	CTCAG	4 cut(s)	212, 264, 434, 559
BspLI	GGNNCC	2 cut(s)	17, 270
BspQI	GCTCTTC	1 cut(s)	98
BssECI	CCNNGG	2 cut(s)	272, 549
BssT1I	CCWWGG	2 cut(s)	272, 549
Bst2UI	CCWGG	2 cut(s)	118, 266
Bst4CI	ACNGT	3 cut(s)	235, 377, 451
Bst6I	CTCTTC	1 cut(s)	98
BstC8I	GCNNGC	3 cut(s)	123, 244, 579
BstDEI	CTNAG	4 cut(s)	199, 251, 421, 567
BstDSI	CCRYGG	1 cut(s)	272
BstF5I	GGATG	2 cut(s)	138, 311
BstMAI	GTCTC	1 cut(s)	438
BstMWI	GCNNNNNNNGC	2 cut(s)	252, 625
BstNI	CCWGG	2 cut(s)	118, 266
BstSCI	CCNGG	2 cut(s)	116, 264
BstSFI	CTRYAG	1 cut(s)	373
BstV1I	GCAGC	2 cut(s)	532, 593
BstV2I	GAAGAC	2 cut(s)	445, 547
BsuRI	GGCC	1 cut(s)	310
BtgI	CCRYGG	1 cut(s)	272
BtsCI	GGATG	2 cut(s)	138, 311
BtsIMutI	CAGTG	1 cut(s)	429
Cac8I	GCNNGC	3 cut(s)	123, 244, 579
Cfr13I	GGNCC	1 cut(s)	172
Csp6I	GTAC	1 cut(s)	295
CviAII	CATG	7 cut(s)	273, 396, 440, 518, 538, 615, 679
CviQI	GTAC	1 cut(s)	295
DdeI	CTNAG	4 cut(s)	199, 251, 421, 567
EaeI	YGGCCR	1 cut(s)	308
Eam1104I	CTCTTC	1 cut(s)	98
EarI	CTCTTC	1 cut(s)	98
Eco130I	CCWWGG	2 cut(s)	272, 549
Eco47I	GGWCC	1 cut(s)	172
EcoRII	CCWGG	2 cut(s)	116, 264
EcoT14I	CCWWGG	2 cut(s)	272, 549
ErhI	CCWWGG	2 cut(s)	272, 549
FaeI	CATG	7 cut(s)	276, 399, 443, 521, 541, 618, 682
FatI	CATG	7 cut(s)	272, 395, 439, 517, 537, 614, 678
FblI	GTMKAC	1 cut(s)	60
Fnu4HI	GCNGC	3 cut(s)	27, 546, 582
FokI	GGATG	2 cut(s)	145, 318
Fsp4HI	GCNGC	3 cut(s)	27, 546, 582
GluI	GCNGC	3 cut(s)	27, 546, 582
GsuI	CTGGAG	1 cut(s)	34
HaeIII	GGCC	1 cut(s)	310
Hin1II	CATG	7 cut(s)	276, 399, 443, 521, 541, 618, 682
HincII	GTYRAC	1 cut(s)	219
HindII	GTYRAC	1 cut(s)	219
HindIII	AAGCTT	2 cut(s)	338, 481
HinfI	GANTC	5 cut(s)	5, 35, 75, 203, 363
HpaI	GTTAAC	1 cut(s)	219
HphI	GGTGA	1 cut(s)	106
Hpy166II	GTNNAC	3 cut(s)	61, 219, 279
Hpy188I	TCNGA	3 cut(s)	202, 491, 568
Hpy188III	TCNNGA	4 cut(s)	13, 130, 138, 457
Hpy8I	GTNNAC	3 cut(s)	61, 219, 279
Hpy99I	CGWCG	2 cut(s)	43, 56
HpyAV	CCTTC	4 cut(s)	402, 406, 565, 655
HpyCH4III	ACNGT	3 cut(s)	235, 377, 451
HpyCH4V	TGCA	4 cut(s)	230, 246, 517, 581
HpyF10VI	GCNNNNNNNGC	2 cut(s)	252, 625
HpyF3I	CTNAG	4 cut(s)	199, 251, 421, 567
Hsp92II	CATG	7 cut(s)	276, 399, 443, 521, 541, 618, 682
KspAI	GTTAAC	1 cut(s)	219
LguI	GCTCTTC	1 cut(s)	98
LmnI	GCTCC	4 cut(s)	15, 157, 268, 574
Lsp1109I	GCAGC	2 cut(s)	532, 593
MboII	GAAGA	7 cut(s)	70, 73, 85, 103, 172, 445, 547
MlsI	TGGCCA	1 cut(s)	310
MluCI	AATT	2 cut(s)	444, 492
MluNI	TGGCCA	1 cut(s)	310
MlyI	GAGTC	2 cut(s)	29, 212
MmeI	TCCRAC	1 cut(s)	199
MnlI	CCTC	1 cut(s)	59
Mox20I	TGGCCA	1 cut(s)	310
MroXI	GAANNNNTTC	2 cut(s)	145, 416
MscI	TGGCCA	1 cut(s)	310
MseI	TTAA	2 cut(s)	218, 632
MslI	CAYNNNNRTG	1 cut(s)	131
Msp20I	TGGCCA	1 cut(s)	310
MspR9I	CCNGG	2 cut(s)	118, 266
Mva1269I	GAATGC	1 cut(s)	246
MvaI	CCWGG	2 cut(s)	118, 266
MwoI	GCNNNNNNNGC	2 cut(s)	252, 625
NcoI	CCATGG	1 cut(s)	272
NlaIII	CATG	7 cut(s)	276, 399, 443, 521, 541, 618, 682
NlaIV	GGNNCC	2 cut(s)	17, 270
NmeAIII	GCCGAG	1 cut(s)	67
PciSI	GCTCTTC	1 cut(s)	98
PctI	GAATGC	1 cut(s)	246
PdmI	GAANNNNTTC	2 cut(s)	145, 416
PfeI	GAWTC	3 cut(s)	5, 75, 363
PflMI	CCANNNNNTGG	1 cut(s)	322
PkrI	GCNGC	3 cut(s)	28, 547, 583
PleI	GAGTC	2 cut(s)	29, 211
PpsI	GAGTC	2 cut(s)	29, 211
Psp6I	CCWGG	2 cut(s)	116, 264
PspGI	CCWGG	2 cut(s)	116, 264
PspN4I	GGNNCC	2 cut(s)	17, 270
PspPI	GGNCC	1 cut(s)	172
RsaI	GTAC	1 cut(s)	296
RsaNI	GTAC	1 cut(s)	295
RseI	CAYNNNNRTG	1 cut(s)	131
SapI	GCTCTTC	1 cut(s)	98
SaqAI	TTAA	2 cut(s)	218, 632
SatI	GCNGC	3 cut(s)	27, 546, 582
Sau96I	GGNCC	1 cut(s)	172
ScaI	AGTACT	1 cut(s)	296
SchI	GAGTC	2 cut(s)	29, 212
ScrFI	CCNGG	2 cut(s)	118, 266
SfcI	CTRYAG	1 cut(s)	373
SinI	GGWCC	1 cut(s)	172
SmiMI	CAYNNNNRTG	1 cut(s)	131
Sse9I	AATT	2 cut(s)	444, 492
SsiI	CCGC	2 cut(s)	27, 628
SspI	AATATT	1 cut(s)	563
StyD4I	CCNGG	2 cut(s)	116, 264
StyI	CCWWGG	2 cut(s)	272, 549
TaaI	ACNGT	3 cut(s)	235, 377, 451
TaqI	TCGA	3 cut(s)	137, 158, 237
TasI	AATT	2 cut(s)	444, 492
TatI	WGTACW	1 cut(s)	294
TauI	GCSGC	1 cut(s)	29
TfiI	GAWTC	3 cut(s)	5, 75, 363
Tru1I	TTAA	2 cut(s)	218, 632
Tru9I	TTAA	2 cut(s)	218, 632
TscAI	CASTG	1 cut(s)	429
TseI	GCWGC	2 cut(s)	545, 581
TspDTI	ATGAA	3 cut(s)	97, 526, 603
TspRI	CASTG	1 cut(s)	429
Van91I	CCANNNNNTGG	1 cut(s)	322
VpaK11BI	GGWCC	1 cut(s)	172
XmiI	GTMKAC	1 cut(s)	60
XmnI	GAANNNNTTC	2 cut(s)	145, 416
ZrmI	AGTACT	1 cut(s)	296

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.