AT3G19460

Reticulon-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0009594
Physical Location & Seq
Forward (+)
6747268 .. 6749329
2062 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G19460.1

Sequence Viewer

Length: 603 bp
ATGGGAGATTCCGTTTCTTCTTCATCCCGCGTTTCTGTTCATCAATCTCTTGGTGCTGGTTCTGTTGCTGATTTGCTGCTATGGAGAAACCGGACTGGTGCAGTCATTTTGCTAATCTCTTCTACTGGGTTTTGGTTCTTATTCGAGAGAGCTGGATACAATCTCTTGTCTTTCGTCTCCAATGTTCTGCTTCTTCTCGTTGCGATCTTCTTCTTATGGGCCAAGTCTGCTACAGTTCTCAACCGACCGCTACCTCCAGTTCCGAATATGGAAATCCCTGAGGAGTTTGCAAATAAGGCTGCTGATGATCTTCGGGTTTGGATCAATTATGTACTGTCAATTGCAAGTGATATCACCATAGCTAGAAATCCGATTCGTCTCCTTCAGGTTTCTCTTGTCTTGTGGGCTATATCCTATGTTGGGACTTTAATCAACTCCCTCACTCTTGTTTACATTGGAGTTCTTCTCAGTCTTTCTTTTCCTATTGTGTATGAGAAGTACCAAGACCACATTGATGAGAAAGTGAACTCGACTTCTAAATTCGTTCGAAATATCTCAAGGAAGTTTCCATTGCCCATAAACAAAGAGAAGAAACATCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko05010 map05010
Pfam Domains
Protein Families
Reticulon

Protein Analysis

200

Amino Acids

22.42

Weight (kDa)

9.56

Isoelectric Point (pI)

38.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Reticulon PF02453 22 - 176 4.5e-50 Reticulon
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 30
AciI CCGC 2 cut(s) 28, 248
AclWI GGATC 1 cut(s) 329
AcsI RAATTY 1 cut(s) 539
AcuI CTGAAG 1 cut(s) 368
AfaI GTAC 2 cut(s) 333, 500
AfiI CCNNNNNNNGG 1 cut(s) 420
AluBI AGCT 2 cut(s) 152, 362
AluI AGCT 2 cut(s) 152, 362
Alw26I GTCTC 2 cut(s) 181, 383
AlwI GGATC 1 cut(s) 329
AoxI GGCC 1 cut(s) 219
ApeKI GCWGC 2 cut(s) 76, 299
ApoI RAATTY 1 cut(s) 539
AspS9I GGNCC 1 cut(s) 219
AsuHPI GGTGA 1 cut(s) 346
AsuII TTCGAA 1 cut(s) 547
AxyI CCTNAGG 1 cut(s) 279
BbvI GCAGC 2 cut(s) 63, 286
BciVI GTATCC 1 cut(s) 149
BcoDI GTCTC 2 cut(s) 181, 383
BfaI CTAG 1 cut(s) 363
BfmI CTRYAG 1 cut(s) 231
BfuI GTATCC 1 cut(s) 149
BisI GCNGC 2 cut(s) 77, 300
BlsI GCNGC 2 cut(s) 78, 301
BmgT120I GGNCC 1 cut(s) 219
BmrI ACTGGG 1 cut(s) 135
BmuI ACTGGG 1 cut(s) 135
BplI GAGNNNNNCTC 2 cut(s) 450, 482
BpmI CTGGAG 1 cut(s) 240
Bpu14I TTCGAA 1 cut(s) 547
BpuEI CTTGAG 1 cut(s) 541
BsaWI WCCGGW 1 cut(s) 90
BsaXI ACNNNNNCTCC 1 cut(s) 27
Bsc4I CCNNNNNNNGG 1 cut(s) 420
Bse1I ACTGG 3 cut(s) 100, 130, 257
Bse21I CCTNAGG 1 cut(s) 279
Bse3DI GCAATG 1 cut(s) 569
BseGI GGATG 1 cut(s) 23
BseLI CCNNNNNNNGG 1 cut(s) 420
BseMI GCAATG 1 cut(s) 569
BseMII CTCAG 2 cut(s) 270, 481
BseNI ACTGG 3 cut(s) 100, 130, 257
BseRI GAGGAG 1 cut(s) 296
BseXI GCAGC 2 cut(s) 63, 286
BsgI GTGCAG 1 cut(s) 120
Bsh1236I CGCG 1 cut(s) 30
Bsh1285I CGRYCG 1 cut(s) 248
BshFI GGCC 1 cut(s) 221
BsiEI CGRYCG 1 cut(s) 248
BsiSI CCGG 1 cut(s) 91
BslFI GGGAC 1 cut(s) 436
BslI CCNNNNNNNGG 1 cut(s) 420
BsmAI GTCTC 2 cut(s) 181, 383
BsmBI CGTCTC 2 cut(s) 181, 383
BsmFI GGGAC 1 cut(s) 436
BsnI GGCC 1 cut(s) 221
Bsp119I TTCGAA 1 cut(s) 547
Bsp143I GATC 3 cut(s) 204, 307, 321
BspACI CCGC 2 cut(s) 28, 248
BspANI GGCC 1 cut(s) 221
BspCNI CTCAG 2 cut(s) 271, 480
BspFNI CGCG 1 cut(s) 30
BspPI GGATC 1 cut(s) 329
BspT104I TTCGAA 1 cut(s) 547
BsrDI GCAATG 1 cut(s) 569
BsrI ACTGG 3 cut(s) 100, 130, 257
BssMI GATC 3 cut(s) 204, 307, 321
Bst4CI ACNGT 2 cut(s) 235, 336
Bst6I CTCTTC 1 cut(s) 124
BstBI TTCGAA 1 cut(s) 547
BstDEI CTNAG 2 cut(s) 279, 467
BstF5I GGATG 1 cut(s) 23
BstFNI CGCG 1 cut(s) 30
BstKTI GATC 3 cut(s) 207, 310, 324
BstMAI GTCTC 2 cut(s) 181, 383
BstMBI GATC 3 cut(s) 204, 307, 321
BstMCI CGRYCG 1 cut(s) 248
BstMWI GCNNNNNNNGC 2 cut(s) 227, 296
BstSFI CTRYAG 1 cut(s) 231
BstUI CGCG 1 cut(s) 30
BstV1I GCAGC 2 cut(s) 63, 286
Bsu36I CCTNAGG 1 cut(s) 279
BsuI GTATCC 1 cut(s) 149
BsuRI GGCC 1 cut(s) 221
BtsCI GGATG 1 cut(s) 23
Cfr13I GGNCC 1 cut(s) 219
Csp6I GTAC 2 cut(s) 332, 499
CviJI RGCY 5 cut(s) 152, 221, 299, 362, 407
CviKI_1 RGCY 5 cut(s) 152, 221, 299, 362, 407
CviQI GTAC 2 cut(s) 332, 499
DdeI CTNAG 2 cut(s) 279, 467
DpnI GATC 3 cut(s) 206, 309, 323
DpnII GATC 3 cut(s) 204, 307, 321
Eam1104I CTCTTC 1 cut(s) 124
EarI CTCTTC 1 cut(s) 124
Eco32I GATATC 1 cut(s) 352
Eco57I CTGAAG 1 cut(s) 368
Eco81I CCTNAGG 1 cut(s) 279
EcoRV GATATC 1 cut(s) 352
Esp3I CGTCTC 2 cut(s) 181, 383
FaiI YATR 9 cut(s) 82, 217, 269, 330, 359, 410, 417, 492, 578
FaqI GGGAC 1 cut(s) 436
FauI CCCGC 1 cut(s) 35
Fnu4HI GCNGC 2 cut(s) 77, 300
FokI GGATG 1 cut(s) 10
Fsp4HI GCNGC 2 cut(s) 77, 300
FspBI CTAG 1 cut(s) 363
GluI GCNGC 2 cut(s) 77, 300
GsuI CTGGAG 1 cut(s) 240
HaeIII GGCC 1 cut(s) 221
HapII CCGG 1 cut(s) 91
HinfI GANTC 2 cut(s) 8, 373
HpaII CCGG 1 cut(s) 91
HphI GGTGA 1 cut(s) 346
Hpy166II GTNNAC 2 cut(s) 451, 526
Hpy188I TCNGA 2 cut(s) 264, 372
Hpy188III TCNNGA 1 cut(s) 145
Hpy8I GTNNAC 2 cut(s) 451, 526
HpyAV CCTTC 1 cut(s) 392
HpyCH4III ACNGT 2 cut(s) 235, 336
HpyCH4V TGCA 3 cut(s) 101, 290, 344
HpyF10VI GCNNNNNNNGC 2 cut(s) 227, 296
HpyF3I CTNAG 2 cut(s) 279, 467
Kzo9I GATC 3 cut(s) 204, 307, 321
LpnPI CCDG 8 cut(s) 42, 81, 104, 111, 138, 270, 291, 371
Lsp1109I GCAGC 2 cut(s) 63, 286
MaeI CTAG 1 cut(s) 363
MalI GATC 3 cut(s) 206, 309, 323
MboI GATC 3 cut(s) 204, 307, 321
MboII GAAGA 9 cut(s) 9, 12, 111, 185, 199, 202, 302, 455, 601
MfeI CAATTG 1 cut(s) 339
MluCI AATT 3 cut(s) 325, 339, 539
MnlI CCTC 3 cut(s) 264, 274, 449
MseI TTAA 1 cut(s) 428
MslI CAYNNNNRTG 1 cut(s) 513
MspI CCGG 1 cut(s) 91
MunI CAATTG 1 cut(s) 339
MvnI CGCG 1 cut(s) 30
MwoI GCNNNNNNNGC 2 cut(s) 227, 296
NdeII GATC 3 cut(s) 204, 307, 321
NspV TTCGAA 1 cut(s) 547
PfeI GAWTC 2 cut(s) 8, 373
PkrI GCNGC 2 cut(s) 78, 301
PspPI GGNCC 1 cut(s) 219
RsaI GTAC 2 cut(s) 333, 500
RsaNI GTAC 2 cut(s) 332, 499
RseI CAYNNNNRTG 1 cut(s) 513
SaqAI TTAA 1 cut(s) 428
SatI GCNGC 2 cut(s) 77, 300
Sau3AI GATC 3 cut(s) 204, 307, 321
Sau96I GGNCC 1 cut(s) 219
SetI ASST 4 cut(s) 154, 256, 364, 390
SfcI CTRYAG 1 cut(s) 231
SfuI TTCGAA 1 cut(s) 547
SmiMI CAYNNNNRTG 1 cut(s) 513
SmlI CTYRAG 1 cut(s) 556
SmoI CTYRAG 1 cut(s) 556
Sse9I AATT 3 cut(s) 325, 339, 539
SsiI CCGC 2 cut(s) 28, 248
SspMI CTAG 1 cut(s) 363
TaaI ACNGT 2 cut(s) 235, 336
TaqI TCGA 3 cut(s) 144, 530, 547
TasI AATT 3 cut(s) 325, 339, 539
TatI WGTACW 1 cut(s) 331
TfiI GAWTC 2 cut(s) 8, 373
Tru1I TTAA 1 cut(s) 428
Tru9I TTAA 1 cut(s) 428
TseI GCWGC 2 cut(s) 76, 299
TspDTI ATGAA 2 cut(s) 12, 29
XapI RAATTY 1 cut(s) 539
XspI CTAG 1 cut(s) 363
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.