Rmu_sc0002360.1_g000019

Reticulon-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002360.1
OG0009594
Physical Location & Seq
Reverse (-)
99056 .. 100337
1282 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002360.1_g000019.1.cds

Sequence Viewer

Length: 624 bp
atgggagactctatgcctccgcatcgcatttccgttcatcaagctctcggcggtggcgccgttgctgatgtgctgctgtggaggaattggagtggaggaatcgtggtactgacatctgcaacggcgtcgtggtatctatttgagcgggccggttacaatctcttgtcctttggggccaatgtcctactgcttcttgtggttatcctcttcttctgggccaaatctgcttcacttctcaatagacctttgcctcctcttcctgatatggaaatatctgaggcgtctgtcatgaaggttgctgatacactgcatgtttggattaatcgtggactctctattgcgcgagacattgctattggcaggaatttcaagctctttcttcaggtttctgttttcttgtgggtagcatcttacattggaagtatcatcaacttccttactcttgcctacgttggggttctaatcagtctttcagtgcccgtcttgtatgataagtttcagcaccacattgatgagaaactctctgtagcaaatagatcaatacaaacgcagtacaggaaacttgatgagagcatcctaaagaagataacaatgcaatcaaacaaggagaagaaggtgcagtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko05010 map05010
Pfam Domains
Protein Families
Reticulon

Protein Analysis

207

Amino Acids

23.14

Weight (kDa)

9.62

Isoelectric Point (pI)

25.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 56
AccBSI CCGCTC 1 cut(s) 145
AccII CGCG 1 cut(s) 343
AciI CCGC 3 cut(s) 20, 51, 145
AcsI RAATTY 1 cut(s) 364
AcuI CTGAAG 1 cut(s) 365
AcyI GRCGYC 3 cut(s) 57, 125, 281
AfaI GTAC 2 cut(s) 108, 554
AfiI CCNNNNNNNGG 1 cut(s) 453
AgsI TTSAA 1 cut(s) 370
AluBI AGCT 2 cut(s) 44, 373
AluI AGCT 2 cut(s) 44, 373
Alw26I GTCTC 1 cut(s) 339
AoxI GGCC 3 cut(s) 147, 174, 216
ApeKI GCWGC 1 cut(s) 73
ApoI RAATTY 1 cut(s) 364
AseI ATTAAT 1 cut(s) 321
AspLEI GCGC 2 cut(s) 59, 343
AspS9I GGNCC 3 cut(s) 147, 174, 216
BaeGI GKGCMC 1 cut(s) 480
BanI GGYRCC 1 cut(s) 56
BbvI GCAGC 1 cut(s) 60
BceAI ACGGC 2 cut(s) 44, 138
BcgI CGANNNNNNTGC 2 cut(s) 108, 142
BcoDI GTCTC 1 cut(s) 339
BfmI CTRYAG 1 cut(s) 525
BfoI RGCGCY 1 cut(s) 60
BisI GCNGC 1 cut(s) 74
BlsI GCNGC 1 cut(s) 75
BmgT120I GGNCC 3 cut(s) 147, 174, 216
BmiI GGNNCC 2 cut(s) 58, 175
BmsI GCATC 3 cut(s) 31, 416, 582
BplI GAGNNNNNCTC 2 cut(s) 506, 538
BsaHI GRCGYC 3 cut(s) 57, 125, 281
BsaXI ACNNNNNCTCC 2 cut(s) 87, 117
Bsc4I CCNNNNNNNGG 1 cut(s) 453
Bse118I RCCGGY 1 cut(s) 149
Bse3DI GCAATG 1 cut(s) 348
BseGI GGATG 1 cut(s) 573
BseLI CCNNNNNNNGG 1 cut(s) 453
BseMI GCAATG 1 cut(s) 348
BseMII CTCAG 1 cut(s) 267
BseRI GAGGAG 1 cut(s) 243
BseSI GKGCMC 1 cut(s) 480
BseXI GCAGC 1 cut(s) 60
Bsh1236I CGCG 1 cut(s) 343
BshFI GGCC 3 cut(s) 149, 176, 218
BshNI GGYRCC 1 cut(s) 56
BsiSI CCGG 1 cut(s) 150
BslI CCNNNNNNNGG 1 cut(s) 453
BsmAI GTCTC 1 cut(s) 339
BsnI GGCC 3 cut(s) 149, 176, 218
Bsp1286I GDGCHC 1 cut(s) 480
Bsp143I GATC 1 cut(s) 536
BspACI CCGC 3 cut(s) 20, 51, 145
BspANI GGCC 3 cut(s) 149, 176, 218
BspCNI CTCAG 1 cut(s) 268
BspFNI CGCG 1 cut(s) 343
BspHI TCATGA 1 cut(s) 288
BspLI GGNNCC 2 cut(s) 58, 175
BspT107I GGYRCC 1 cut(s) 56
BsrBI CCGCTC 1 cut(s) 145
BsrDI GCAATG 1 cut(s) 348
BsrFI RCCGGY 1 cut(s) 149
BssAI RCCGGY 1 cut(s) 149
BssMI GATC 1 cut(s) 536
BssNI GRCGYC 3 cut(s) 57, 125, 281
Bst6I CTCTTC 2 cut(s) 212, 261
BstACI GRCGYC 3 cut(s) 57, 125, 281
BstC8I GCNNGC 1 cut(s) 147
BstDEI CTNAG 1 cut(s) 276
BstF5I GGATG 1 cut(s) 573
BstFNI CGCG 1 cut(s) 343
BstH2I RGCGCY 1 cut(s) 60
BstHHI GCGC 2 cut(s) 59, 343
BstKTI GATC 1 cut(s) 539
BstMAI GTCTC 1 cut(s) 339
BstMBI GATC 1 cut(s) 536
BstMWI GCNNNNNNNGC 1 cut(s) 224
BstNSI RCATGY 1 cut(s) 314
BstSFI CTRYAG 1 cut(s) 525
BstSLI GKGCMC 1 cut(s) 480
BstUI CGCG 1 cut(s) 343
BstV1I GCAGC 1 cut(s) 60
BsuRI GGCC 3 cut(s) 149, 176, 218
BtgZI GCGATG 1 cut(s) 8
BtsCI GGATG 1 cut(s) 573
BtsI GCAGTG 1 cut(s) 305
BtsIMutI CAGTG 2 cut(s) 305, 480
Cac8I GCNNGC 1 cut(s) 147
CciI TCATGA 1 cut(s) 288
CfoI GCGC 2 cut(s) 59, 343
Cfr10I RCCGGY 1 cut(s) 149
Cfr13I GGNCC 3 cut(s) 147, 174, 216
CseI GACGC 2 cut(s) 114, 270
Csp6I GTAC 2 cut(s) 107, 553
CviAII CATG 2 cut(s) 289, 311
CviJI RGCY 5 cut(s) 44, 149, 176, 218, 373
CviKI_1 RGCY 5 cut(s) 44, 149, 176, 218, 373
CviQI GTAC 2 cut(s) 107, 553
DdeI CTNAG 1 cut(s) 276
DinI GGCGCC 1 cut(s) 58
DpnI GATC 1 cut(s) 538
DpnII GATC 1 cut(s) 536
Eam1104I CTCTTC 2 cut(s) 212, 261
EarI CTCTTC 2 cut(s) 212, 261
Eco57I CTGAAG 1 cut(s) 365
EgeI GGCGCC 1 cut(s) 58
EheI GGCGCC 1 cut(s) 58
FaeI CATG 2 cut(s) 292, 314
FaiI YATR 5 cut(s) 14, 266, 290, 312, 489
FatI CATG 2 cut(s) 288, 310
FauI CCCGC 1 cut(s) 138
Fnu4HI GCNGC 1 cut(s) 74
FokI GGATG 1 cut(s) 560
Fsp4HI GCNGC 1 cut(s) 74
GlaI GCGC 2 cut(s) 58, 342
GluI GCNGC 1 cut(s) 74
HaeII RGCGCY 1 cut(s) 60
HaeIII GGCC 3 cut(s) 149, 176, 218
HapII CCGG 1 cut(s) 150
HgaI GACGC 2 cut(s) 114, 270
HhaI GCGC 2 cut(s) 59, 343
Hin1I GRCGYC 3 cut(s) 57, 125, 281
Hin1II CATG 2 cut(s) 292, 314
Hin6I GCGC 2 cut(s) 57, 341
HinP1I GCGC 2 cut(s) 57, 341
HinfI GANTC 3 cut(s) 8, 99, 330
HpaII CCGG 1 cut(s) 150
Hpy166II GTNNAC 1 cut(s) 329
Hpy188I TCNGA 1 cut(s) 277
Hpy188III TCNNGA 2 cut(s) 260, 289
Hpy8I GTNNAC 1 cut(s) 329
Hpy99I CGWCG 1 cut(s) 130
HpyAV CCTTC 2 cut(s) 286, 607
HpyCH4IV ACGT 1 cut(s) 450
HpyCH4V TGCA 4 cut(s) 119, 310, 595, 619
HpyF10VI GCNNNNNNNGC 1 cut(s) 224
HpyF3I CTNAG 1 cut(s) 276
HpySE526I ACGT 1 cut(s) 450
Hsp92I GRCGYC 3 cut(s) 57, 125, 281
Hsp92II CATG 2 cut(s) 292, 314
HspAI GCGC 2 cut(s) 57, 341
KasI GGCGCC 1 cut(s) 56
Kzo9I GATC 1 cut(s) 536
LpnPI CCDG 6 cut(s) 163, 199, 273, 346, 368, 541
Lsp1109I GCAGC 1 cut(s) 60
LweI GCATC 3 cut(s) 31, 416, 582
MaeII ACGT 1 cut(s) 450
MaeIII GTNAC 1 cut(s) 152
MalI GATC 1 cut(s) 538
MbiI CCGCTC 1 cut(s) 145
MboI GATC 1 cut(s) 536
MboII GAAGA 6 cut(s) 199, 202, 248, 371, 595, 622
MhlI GDGCHC 1 cut(s) 480
MluCI AATT 2 cut(s) 85, 364
Mly113I GGCGCC 1 cut(s) 57
MlyI GAGTC 2 cut(s) 2, 324
MnlI CCTC 7 cut(s) 27, 75, 89, 215, 261, 264, 271
MseI TTAA 1 cut(s) 321
MslI CAYNNNNRTG 1 cut(s) 510
MspI CCGG 1 cut(s) 150
MvnI CGCG 1 cut(s) 343
MwoI GCNNNNNNNGC 1 cut(s) 224
NarI GGCGCC 1 cut(s) 57
NdeII GATC 1 cut(s) 536
NlaIII CATG 2 cut(s) 292, 314
NlaIV GGNNCC 2 cut(s) 58, 175
NmeAIII GCCGAG 1 cut(s) 27
NspI RCATGY 1 cut(s) 314
PagI TCATGA 1 cut(s) 288
PfeI GAWTC 1 cut(s) 99
PkrI GCNGC 1 cut(s) 75
PleI GAGTC 2 cut(s) 2, 324
PluTI GGCGCC 1 cut(s) 60
PpsI GAGTC 2 cut(s) 2, 324
PshBI ATTAAT 1 cut(s) 321
PspN4I GGNNCC 2 cut(s) 58, 175
PspPI GGNCC 3 cut(s) 147, 174, 216
RsaI GTAC 2 cut(s) 108, 554
RsaNI GTAC 2 cut(s) 107, 553
RseI CAYNNNNRTG 1 cut(s) 510
SaqAI TTAA 1 cut(s) 321
SatI GCNGC 1 cut(s) 74
Sau3AI GATC 1 cut(s) 536
Sau96I GGNCC 3 cut(s) 147, 174, 216
SchI GAGTC 2 cut(s) 2, 324
SduI GDGCHC 1 cut(s) 480
SetI ASST 7 cut(s) 46, 247, 297, 375, 387, 453, 618
SfaNI GCATC 3 cut(s) 31, 416, 582
SfcI CTRYAG 1 cut(s) 525
SfoI GGCGCC 1 cut(s) 58
SmiMI CAYNNNNRTG 1 cut(s) 510
Sse9I AATT 2 cut(s) 85, 364
SsiI CCGC 3 cut(s) 20, 51, 145
SspDI GGCGCC 1 cut(s) 56
TaiI ACGT 1 cut(s) 453
TasI AATT 2 cut(s) 85, 364
TatI WGTACW 1 cut(s) 552
TfiI GAWTC 1 cut(s) 99
Tru1I TTAA 1 cut(s) 321
Tru9I TTAA 1 cut(s) 321
TscAI CASTG 2 cut(s) 312, 480
TseI GCWGC 1 cut(s) 73
TspDTI ATGAA 2 cut(s) 26, 305
TspGWI ACGGA 1 cut(s) 22
TspRI CASTG 2 cut(s) 312, 480
VspI ATTAAT 1 cut(s) 321
XapI RAATTY 1 cut(s) 364
XceI RCATGY 1 cut(s) 314
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.