MD05G1089300.v1.1

Reticulon-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0009594
Physical Location & Seq
Reverse (-)
18962990 .. 18964201
1212 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1089300.v1.1.491

Sequence Viewer

Length: 507 bp
ATGGGAGAATCTATGCCTCCTCGTCGCAATTCCGTTCATCAAGCTCTCGGAGGTGGCCATGTTGCTGATGTGCTCCTGTGGAAGAAATGGAGTGGAGGAGTTTTACTGCTGACCTCTACGACGGCGTCGTGGTTGCTGTTTGAGCGAGCTGGCTACAATCTCTTGTCCTTTGTGGCTAATGTTCTACTGCTACTTGTAGTCATCCTCTTCCTCTGGGCCAAATCGGCTTCTCTTCTCAACAGACCTTTGCCTCCTCTCCCCGATATGGAAATCTCAGAGGCTAATGTAGTGAAGGCTGCTGAGGCACTGCATGCTGGGATTAATCGTGGATTGTCTATTGCACGAGACATTGCTATTGGGAGAAATTGGAAACTCTTCCTTCAGGTCGCTTTCTGCTTGTGGCTAGCTTCTTACATCGGAAGTTTCTTCAACTTCCTTACTCTTGTCTACATTGGTAAGCTCTTTACTGCACATTGTATCTATTTATGTTTGGGTGCATGTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko05010 map05010
Pfam Domains
Protein Families
Reticulon

Protein Analysis

169

Amino Acids

18.45

Weight (kDa)

9.24

Isoelectric Point (pI)

33.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Reticulon PF02453 21 - 155 5.5e-43 Reticulon
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 447
AcoI YGGCCR 1 cut(s) 55
AcuI CTGAAG 1 cut(s) 365
AcyI GRCGYC 1 cut(s) 125
AfiI CCNNNNNNNGG 1 cut(s) 265
AgsI TTSAA 1 cut(s) 430
AluBI AGCT 4 cut(s) 44, 149, 407, 460
AluI AGCT 4 cut(s) 44, 149, 407, 460
Alw21I GWGCWC 1 cut(s) 75
Alw26I GTCTC 1 cut(s) 339
AoxI GGCC 2 cut(s) 55, 216
ApeKI GCWGC 1 cut(s) 296
AseI ATTAAT 1 cut(s) 321
Asp700I GAANNNNTTC 1 cut(s) 374
AspS9I GGNCC 1 cut(s) 216
AsuNHI GCTAGC 1 cut(s) 403
BalI TGGCCA 1 cut(s) 57
BauI CACGAG 1 cut(s) 342
Bbv12I GWGCWC 1 cut(s) 75
BbvCI CCTCAGC 1 cut(s) 300
BbvI GCAGC 1 cut(s) 283
BceAI ACGGC 1 cut(s) 138
BcoDI GTCTC 1 cut(s) 339
BfaI CTAG 1 cut(s) 404
BglI GCCNNNNNGGC 1 cut(s) 224
BisI GCNGC 1 cut(s) 297
BlsI GCNGC 1 cut(s) 298
BmgT120I GGNCC 1 cut(s) 216
BmtI GCTAGC 1 cut(s) 407
Bpu10I CCTNAGC 1 cut(s) 300
BsaHI GRCGYC 1 cut(s) 125
Bsc4I CCNNNNNNNGG 1 cut(s) 265
Bse3DI GCAATG 1 cut(s) 348
BseGI GGATG 1 cut(s) 201
BseLI CCNNNNNNNGG 1 cut(s) 265
BseMI GCAATG 1 cut(s) 348
BseMII CTCAG 2 cut(s) 288, 291
BseRI GAGGAG 3 cut(s) 9, 111, 243
BseXI GCAGC 1 cut(s) 283
BseYI CCCAGC 1 cut(s) 314
BsgI GTGCAG 1 cut(s) 453
BshFI GGCC 2 cut(s) 57, 218
BsiHKAI GWGCWC 1 cut(s) 75
BslI CCNNNNNNNGG 1 cut(s) 265
BsmAI GTCTC 1 cut(s) 339
BsnI GGCC 2 cut(s) 57, 218
Bsp1286I GDGCHC 1 cut(s) 75
BspANI GGCC 2 cut(s) 57, 218
BspCNI CTCAG 2 cut(s) 287, 292
BspOI GCTAGC 1 cut(s) 407
BsrDI GCAATG 1 cut(s) 348
BssNI GRCGYC 1 cut(s) 125
BssSI CACGAG 1 cut(s) 342
Bst2BI CACGAG 1 cut(s) 342
Bst6I CTCTTC 3 cut(s) 212, 237, 380
BstACI GRCGYC 1 cut(s) 125
BstAPI GCANNNNNTGC 1 cut(s) 311
BstC8I GCNNGC 4 cut(s) 147, 151, 312, 405
BstDEI CTNAG 2 cut(s) 274, 300
BstF5I GGATG 1 cut(s) 201
BstMAI GTCTC 1 cut(s) 339
BstMWI GCNNNNNNNGC 4 cut(s) 142, 224, 302, 311
BstNSI RCATGY 2 cut(s) 314, 501
BstV1I GCAGC 1 cut(s) 283
BsuRI GGCC 2 cut(s) 57, 218
BtsCI GGATG 1 cut(s) 201
BtsI GCAGTG 1 cut(s) 305
BtsIMutI CAGTG 1 cut(s) 305
Cac8I GCNNGC 4 cut(s) 147, 151, 312, 405
Cfr13I GGNCC 1 cut(s) 216
CseI GACGC 1 cut(s) 114
CviAII CATG 3 cut(s) 59, 311, 498
DdeI CTNAG 2 cut(s) 274, 300
EaeI YGGCCR 1 cut(s) 55
Eam1104I CTCTTC 3 cut(s) 212, 237, 380
EarI CTCTTC 3 cut(s) 212, 237, 380
Eco57I CTGAAG 1 cut(s) 365
FaeI CATG 3 cut(s) 62, 314, 501
FaiI YATR 6 cut(s) 14, 60, 266, 312, 487, 499
FatI CATG 3 cut(s) 58, 310, 497
FblI GTMKAC 1 cut(s) 447
Fnu4HI GCNGC 1 cut(s) 297
FokI GGATG 1 cut(s) 188
Fsp4HI GCNGC 1 cut(s) 297
FspBI CTAG 1 cut(s) 404
GluI GCNGC 1 cut(s) 297
GsaI CCCAGC 1 cut(s) 318
HaeIII GGCC 2 cut(s) 57, 218
HgaI GACGC 1 cut(s) 114
Hin1I GRCGYC 1 cut(s) 125
Hin1II CATG 3 cut(s) 62, 314, 501
HinfI GANTC 1 cut(s) 8
Hpy166II GTNNAC 1 cut(s) 448
Hpy188I TCNGA 3 cut(s) 50, 277, 419
Hpy188III TCNNGA 1 cut(s) 504
Hpy8I GTNNAC 1 cut(s) 448
Hpy99I CGWCG 3 cut(s) 27, 124, 130
HpyAV CCTTC 2 cut(s) 286, 389
HpyCH4V TGCA 4 cut(s) 310, 341, 470, 497
HpyF10VI GCNNNNNNNGC 4 cut(s) 142, 224, 302, 311
HpyF3I CTNAG 2 cut(s) 274, 300
Hsp92I GRCGYC 1 cut(s) 125
Hsp92II CATG 3 cut(s) 62, 314, 501
LmnI GCTCC 1 cut(s) 78
LpnPI CCDG 5 cut(s) 89, 135, 199, 300, 368
Lsp1109I GCAGC 1 cut(s) 283
MaeI CTAG 1 cut(s) 404
MboII GAAGA 5 cut(s) 94, 199, 224, 367, 418
MhlI GDGCHC 1 cut(s) 75
MlsI TGGCCA 1 cut(s) 57
MluCI AATT 2 cut(s) 28, 364
MluNI TGGCCA 1 cut(s) 57
Mox20I TGGCCA 1 cut(s) 57
MroXI GAANNNNTTC 1 cut(s) 374
MscI TGGCCA 1 cut(s) 57
MseI TTAA 1 cut(s) 321
Msp20I TGGCCA 1 cut(s) 57
MwoI GCNNNNNNNGC 4 cut(s) 142, 224, 302, 311
NheI GCTAGC 1 cut(s) 403
NlaIII CATG 3 cut(s) 62, 314, 501
NspI RCATGY 2 cut(s) 314, 501
PaeI GCATGC 1 cut(s) 314
PcsI WCGNNNNNNNCGW 1 cut(s) 125
PdmI GAANNNNTTC 1 cut(s) 374
PfeI GAWTC 1 cut(s) 8
PflFI GACNNNGTC 1 cut(s) 124
PkrI GCNGC 1 cut(s) 298
PshBI ATTAAT 1 cut(s) 321
PspFI CCCAGC 1 cut(s) 314
PspPI GGNCC 1 cut(s) 216
PsyI GACNNNGTC 1 cut(s) 124
SaqAI TTAA 1 cut(s) 321
SatI GCNGC 1 cut(s) 297
Sau96I GGNCC 1 cut(s) 216
SduI GDGCHC 1 cut(s) 75
SetI ASST 8 cut(s) 46, 55, 116, 151, 247, 387, 409, 462
SphI GCATGC 1 cut(s) 314
Sse9I AATT 2 cut(s) 28, 364
SspMI CTAG 1 cut(s) 404
TasI AATT 2 cut(s) 28, 364
TfiI GAWTC 1 cut(s) 8
Tru1I TTAA 1 cut(s) 321
Tru9I TTAA 1 cut(s) 321
TscAI CASTG 1 cut(s) 312
TseI GCWGC 1 cut(s) 296
TspDTI ATGAA 1 cut(s) 26
TspGWI ACGGA 1 cut(s) 22
TspRI CASTG 1 cut(s) 312
Tth111I GACNNNGTC 1 cut(s) 124
VspI ATTAAT 1 cut(s) 321
XceI RCATGY 2 cut(s) 314, 501
XmiI GTMKAC 1 cut(s) 447
XmnI GAANNNNTTC 1 cut(s) 374
XspI CTAG 1 cut(s) 404
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.