RLG00000014844

Reticulon-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0009594
Physical Location & Seq
Reverse (-)
58274109 .. 58277284
3176 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000014844

Sequence Viewer

Length: 687 bp
ATGGGAGACTCTATGCCTCCGCATCGCATTTCCGTTCATCAAGCTCTCGGCGGTGGCGCCGTTGCTGATGTGCTGCTGTGGAGGAATTGGAGTGGAGGAATCGTAGTGCTGACCTCTGCAACGGCGTCGTGGTATCTATTTGAGCGAGCCGGTTACAATCTCTTGTCCTTTGGGGCCAATGTTCTACTGCTTCTTGTGGTTATCCTCTTCTTCTGGGCCAAATCTGCTTCACTTCTCAATAGACCTTTGCCTCCTCTTCCTGATATGGAAATATCTGAGGCGTCTGTCATGAAGGTTGCTGATACACTGCATGTTTGGATTAATCGTGGACTGTCTATTGCGCGAGACATTGCTATTGGCAGGAATTTCAAGCTCTTTCTTCAGGTTTCTGTTTTCTTGTGGGTAGCATCTTACATTGGAAGTATCTTCAACTTCCTTACTCTTGCCTATGTTGGGGTTCTAATCAGTCTTTCAGTGCCCATCTTGTATGATAAGTTTCAGCACCACATTGATGATAAGCTCTCTGTAGCACATAGAACAATACAAACACAGTACAGGAAACTTGATGAGAGCATCCTAAAGAAGATGCCAATGCAATCAAACAAGGAGAAGAAGGTGCAGGTATCATGGAGCTCAGAGAAGTGTGATAGTAGCCTTAGAGGTGGTTTTGAATGGTTTTTGACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko05010 map05010
Pfam Domains
Protein Families
Reticulon

Protein Analysis

229

Amino Acids

25.63

Weight (kDa)

9.35

Isoelectric Point (pI)

29.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Reticulon PF02453 21 - 175 4.8e-52 Reticulon
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 610
AccB1I GGYRCC 1 cut(s) 56
AccII CGCG 1 cut(s) 343
AciI CCGC 2 cut(s) 20, 51
AcsI RAATTY 1 cut(s) 364
AcuI CTGAAG 1 cut(s) 365
AcyI GRCGYC 3 cut(s) 57, 125, 281
AfaI GTAC 1 cut(s) 554
AfiI CCNNNNNNNGG 1 cut(s) 453
AgsI TTSAA 3 cut(s) 370, 430, 671
AluBI AGCT 4 cut(s) 44, 373, 520, 633
AluI AGCT 4 cut(s) 44, 373, 520, 633
Alw21I GWGCWC 1 cut(s) 635
Alw26I GTCTC 1 cut(s) 339
AoxI GGCC 2 cut(s) 174, 216
ApeKI GCWGC 1 cut(s) 73
ApoI RAATTY 1 cut(s) 364
AseI ATTAAT 1 cut(s) 321
AspLEI GCGC 2 cut(s) 59, 343
AspS9I GGNCC 2 cut(s) 174, 216
BaeGI GKGCMC 1 cut(s) 480
BanI GGYRCC 1 cut(s) 56
BanII GRGCYC 1 cut(s) 635
Bbv12I GWGCWC 1 cut(s) 635
BbvI GCAGC 1 cut(s) 60
BccI CCATC 1 cut(s) 488
BceAI ACGGC 2 cut(s) 44, 138
BcgI CGANNNNNNTGC 2 cut(s) 108, 142
BcoDI GTCTC 1 cut(s) 339
BfmI CTRYAG 1 cut(s) 525
BfoI RGCGCY 1 cut(s) 60
BfuAI ACCTGC 1 cut(s) 610
BisI GCNGC 1 cut(s) 74
BlsI GCNGC 1 cut(s) 75
BmgT120I GGNCC 2 cut(s) 174, 216
BmiI GGNNCC 2 cut(s) 58, 175
BmsI GCATC 4 cut(s) 31, 416, 576, 582
BsaHI GRCGYC 3 cut(s) 57, 125, 281
BsaXI ACNNNNNCTCC 2 cut(s) 87, 117
Bsc4I CCNNNNNNNGG 1 cut(s) 453
Bse118I RCCGGY 1 cut(s) 149
Bse3DI GCAATG 1 cut(s) 348
BseGI GGATG 1 cut(s) 573
BseLI CCNNNNNNNGG 1 cut(s) 453
BseMI GCAATG 1 cut(s) 348
BseMII CTCAG 2 cut(s) 267, 648
BseRI GAGGAG 1 cut(s) 243
BseSI GKGCMC 1 cut(s) 480
BseXI GCAGC 1 cut(s) 60
BsgI GTGCAG 1 cut(s) 638
Bsh1236I CGCG 1 cut(s) 343
BshFI GGCC 2 cut(s) 176, 218
BshNI GGYRCC 1 cut(s) 56
BsiHKAI GWGCWC 1 cut(s) 635
BsiSI CCGG 1 cut(s) 150
BslI CCNNNNNNNGG 1 cut(s) 453
BsmAI GTCTC 1 cut(s) 339
BsnI GGCC 2 cut(s) 176, 218
Bsp1286I GDGCHC 2 cut(s) 480, 635
BspACI CCGC 2 cut(s) 20, 51
BspANI GGCC 2 cut(s) 176, 218
BspCNI CTCAG 2 cut(s) 268, 647
BspFNI CGCG 1 cut(s) 343
BspHI TCATGA 1 cut(s) 288
BspLI GGNNCC 2 cut(s) 58, 175
BspMI ACCTGC 1 cut(s) 610
BspT107I GGYRCC 1 cut(s) 56
BsrDI GCAATG 1 cut(s) 348
BsrFI RCCGGY 1 cut(s) 149
BssAI RCCGGY 1 cut(s) 149
BssNI GRCGYC 3 cut(s) 57, 125, 281
Bst4CI ACNGT 2 cut(s) 333, 552
Bst6I CTCTTC 2 cut(s) 212, 261
BstACI GRCGYC 3 cut(s) 57, 125, 281
BstC8I GCNNGC 1 cut(s) 147
BstDEI CTNAG 3 cut(s) 276, 634, 656
BstF5I GGATG 1 cut(s) 573
BstFNI CGCG 1 cut(s) 343
BstH2I RGCGCY 1 cut(s) 60
BstHHI GCGC 2 cut(s) 59, 343
BstMAI GTCTC 1 cut(s) 339
BstMWI GCNNNNNNNGC 1 cut(s) 224
BstNSI RCATGY 1 cut(s) 314
BstSFI CTRYAG 1 cut(s) 525
BstSLI GKGCMC 1 cut(s) 480
BstUI CGCG 1 cut(s) 343
BstV1I GCAGC 1 cut(s) 60
BsuRI GGCC 2 cut(s) 176, 218
BtgZI GCGATG 1 cut(s) 8
BtsCI GGATG 1 cut(s) 573
BtsI GCAGTG 1 cut(s) 305
BtsIMutI CAGTG 2 cut(s) 305, 480
BveI ACCTGC 1 cut(s) 610
Cac8I GCNNGC 1 cut(s) 147
CciI TCATGA 1 cut(s) 288
CfoI GCGC 2 cut(s) 59, 343
Cfr10I RCCGGY 1 cut(s) 149
Cfr13I GGNCC 2 cut(s) 174, 216
CseI GACGC 2 cut(s) 114, 270
Csp6I GTAC 1 cut(s) 553
CviAII CATG 4 cut(s) 289, 311, 627, 684
CviJI RGCY 8 cut(s) 44, 149, 176, 218, 373, 520, 633, 654
CviKI_1 RGCY 8 cut(s) 44, 149, 176, 218, 373, 520, 633, 654
CviQI GTAC 1 cut(s) 553
DdeI CTNAG 3 cut(s) 276, 634, 656
DinI GGCGCC 1 cut(s) 58
Eam1104I CTCTTC 2 cut(s) 212, 261
EarI CTCTTC 2 cut(s) 212, 261
Ecl136II GAGCTC 1 cut(s) 633
Eco24I GRGCYC 1 cut(s) 635
Eco53kI GAGCTC 1 cut(s) 633
Eco57I CTGAAG 1 cut(s) 365
EcoICRI GAGCTC 1 cut(s) 633
EcoT38I GRGCYC 1 cut(s) 635
EgeI GGCGCC 1 cut(s) 58
EheI GGCGCC 1 cut(s) 58
FaeI CATG 4 cut(s) 292, 314, 630, 687
FaiI YATR 9 cut(s) 14, 266, 290, 312, 450, 489, 534, 628, 685
FatI CATG 4 cut(s) 288, 310, 626, 683
Fnu4HI GCNGC 1 cut(s) 74
FokI GGATG 1 cut(s) 560
FriOI GRGCYC 1 cut(s) 635
Fsp4HI GCNGC 1 cut(s) 74
GlaI GCGC 2 cut(s) 58, 342
GluI GCNGC 1 cut(s) 74
HaeII RGCGCY 1 cut(s) 60
HaeIII GGCC 2 cut(s) 176, 218
HapII CCGG 1 cut(s) 150
HgaI GACGC 2 cut(s) 114, 270
HhaI GCGC 2 cut(s) 59, 343
Hin1I GRCGYC 3 cut(s) 57, 125, 281
Hin1II CATG 4 cut(s) 292, 314, 630, 687
Hin6I GCGC 2 cut(s) 57, 341
HinP1I GCGC 2 cut(s) 57, 341
HinfI GANTC 2 cut(s) 8, 99
HpaII CCGG 1 cut(s) 150
Hpy166II GTNNAC 1 cut(s) 329
Hpy188I TCNGA 2 cut(s) 277, 637
Hpy188III TCNNGA 2 cut(s) 260, 289
Hpy8I GTNNAC 1 cut(s) 329
Hpy99I CGWCG 1 cut(s) 130
HpyAV CCTTC 2 cut(s) 286, 607
HpyCH4III ACNGT 2 cut(s) 333, 552
HpyCH4V TGCA 4 cut(s) 119, 310, 595, 619
HpyF10VI GCNNNNNNNGC 1 cut(s) 224
HpyF3I CTNAG 3 cut(s) 276, 634, 656
Hsp92I GRCGYC 3 cut(s) 57, 125, 281
Hsp92II CATG 4 cut(s) 292, 314, 630, 687
HspAI GCGC 2 cut(s) 57, 341
KasI GGCGCC 1 cut(s) 56
LmnI GCTCC 1 cut(s) 630
LpnPI CCDG 7 cut(s) 163, 199, 273, 346, 368, 541, 605
Lsp1109I GCAGC 1 cut(s) 60
LweI GCATC 4 cut(s) 31, 416, 576, 582
MaeIII GTNAC 1 cut(s) 152
MboII GAAGA 7 cut(s) 199, 202, 248, 371, 418, 595, 622
MhlI GDGCHC 2 cut(s) 480, 635
MluCI AATT 2 cut(s) 85, 364
Mly113I GGCGCC 1 cut(s) 57
MlyI GAGTC 1 cut(s) 2
MnlI CCTC 9 cut(s) 27, 75, 89, 124, 215, 261, 264, 271, 653
MseI TTAA 1 cut(s) 321
MslI CAYNNNNRTG 1 cut(s) 510
MspI CCGG 1 cut(s) 150
MvnI CGCG 1 cut(s) 343
MwoI GCNNNNNNNGC 1 cut(s) 224
NarI GGCGCC 1 cut(s) 57
NlaIII CATG 4 cut(s) 292, 314, 630, 687
NlaIV GGNNCC 2 cut(s) 58, 175
NmeAIII GCCGAG 1 cut(s) 27
NspI RCATGY 1 cut(s) 314
PagI TCATGA 1 cut(s) 288
PfeI GAWTC 1 cut(s) 99
PkrI GCNGC 1 cut(s) 75
PleI GAGTC 1 cut(s) 2
PluTI GGCGCC 1 cut(s) 60
PpsI GAGTC 1 cut(s) 2
PshBI ATTAAT 1 cut(s) 321
Psp124BI GAGCTC 1 cut(s) 635
PspN4I GGNNCC 2 cut(s) 58, 175
PspPI GGNCC 2 cut(s) 174, 216
RsaI GTAC 1 cut(s) 554
RsaNI GTAC 1 cut(s) 553
RseI CAYNNNNRTG 1 cut(s) 510
SacI GAGCTC 1 cut(s) 635
SaqAI TTAA 1 cut(s) 321
SatI GCNGC 1 cut(s) 74
Sau96I GGNCC 2 cut(s) 174, 216
SchI GAGTC 1 cut(s) 2
SduI GDGCHC 2 cut(s) 480, 635
SfaNI GCATC 4 cut(s) 31, 416, 576, 582
SfcI CTRYAG 1 cut(s) 525
SfoI GGCGCC 1 cut(s) 58
SmiMI CAYNNNNRTG 1 cut(s) 510
Sse9I AATT 2 cut(s) 85, 364
SsiI CCGC 2 cut(s) 20, 51
SspDI GGCGCC 1 cut(s) 56
SstI GAGCTC 1 cut(s) 635
TaaI ACNGT 2 cut(s) 333, 552
TasI AATT 2 cut(s) 85, 364
TatI WGTACW 1 cut(s) 552
TfiI GAWTC 1 cut(s) 99
Tru1I TTAA 1 cut(s) 321
Tru9I TTAA 1 cut(s) 321
TscAI CASTG 2 cut(s) 312, 480
TseI GCWGC 1 cut(s) 73
TspDTI ATGAA 2 cut(s) 26, 305
TspGWI ACGGA 1 cut(s) 22
TspRI CASTG 2 cut(s) 312, 480
VspI ATTAAT 1 cut(s) 321
XapI RAATTY 1 cut(s) 364
XceI RCATGY 1 cut(s) 314
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.