Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0009594

Physical Location & Seq

Genomic Coordinates Reverse (-)

15546855 .. 15549877

Gene Structure 3023 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G134700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGGGAGAATCTGTCCCTCCTCGTCGCATTTCCGTTCATCAAGCTCTCGGCGGTGGCCATGTTGCTGATGTGCTGCTGTGGAAGAAATGGAGTGGAGGAGTTTTACTGCTAACCTCTACAGCATCCTCGTGGTTCCTATTTGAGCGAGCTGGTTACAACCTCTTGTCCTTTGTGGCCAATGTTCTACTGCTTCTTGTGGTCATCCTCTTCCTATGGGCCAAATCTGCTTCCCTTCTCAACAGACCTTTGCCGCCTCTCCCTGATATGGAAATCTCTGAGGCCTCTGTCGTGAAGGCTGCTGATGCACTGCACGCTTGGATTAATCGTGTTCTCTCTATTGCACGAGACATTGCTATTGGCCGAAATTGGAAACTCTTTCTTCAGGTTGCTTTTTGCTTGTGGCTAGTATCTTACATCGGAAGCTTCTTCAACTTCCTCACTCTTGTCTACATTGGGGTTGTTCTTAGTCTTTCAGTGCCAGTAGTGTATGATAAGTATCAGGGCCACATTGATGAGAAGCTTCTTGTAGCAAATAGAGCAATACAAACACAGTACAGGAAAATTGATGATAGCATCTTAAAGAAAATTCCATTGCGATCAAACAAGGAGAAGAAGGTGCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko05010 map05010

Pfam Domains

Protein Families

Reticulon

Protein Analysis

208

Amino Acids

23.23

Weight (kDa)

9.77

Isoelectric Point (pI)

32.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009594)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19460 AT3G19460 AT3G19460 AT3G19460 AT3G19460 AT3G19460 AT3G19460
fragaria_vesca	FvH4_2g05230
malus_domestica	MD05G1088700.v1.1 MD05G1089300.v1.1 MD10G1096800.v1.1
prunus_persica	Prupe.8G134700_v2.0.a1 Prupe.8G134700_v2.0.a1
pyrus_communis	pycom05g08810
rosa_chinensis	RchiOBHm_Chr6g0255361
rosa_laevigata	RLG00000014844
rosa_multiflora	Rmu_sc0000903.1_g000036 Rmu_sc0002360.1_g000019
rosa_roxburghii	Rroxscaffold_7G00210050
rosa_rugosa	Rorug05G0557700 Rorug05G0557700
rosa_samantha	Rh6AG075600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	447
AciI	CCGC	2 cut(s)	51, 251
AcoI	YGGCCR	3 cut(s)	55, 174, 358
AcsI	RAATTY	1 cut(s)	585
AcuI	CTGAAG	1 cut(s)	365
AfaI	GTAC	1 cut(s)	554
AfiI	CCNNNNNNNGG	1 cut(s)	265
AgsI	TTSAA	1 cut(s)	430
AluBI	AGCT	4 cut(s)	44, 149, 423, 520
AluI	AGCT	4 cut(s)	44, 149, 423, 520
Alw26I	GTCTC	1 cut(s)	339
AoxI	GGCC	6 cut(s)	55, 174, 216, 279, 358, 502
ApeKI	GCWGC	2 cut(s)	73, 296
ApoI	RAATTY	1 cut(s)	585
AseI	ATTAAT	1 cut(s)	321
AspS9I	GGNCC	2 cut(s)	216, 502
BalI	TGGCCA	2 cut(s)	57, 176
BauI	CACGAG	2 cut(s)	127, 342
BbvI	GCAGC	2 cut(s)	60, 283
BcoDI	GTCTC	1 cut(s)	339
BfaI	CTAG	1 cut(s)	404
BfmI	CTRYAG	1 cut(s)	117
BisI	GCNGC	3 cut(s)	74, 251, 297
BlsI	GCNGC	3 cut(s)	75, 252, 298
BmgT120I	GGNCC	2 cut(s)	216, 502
BmiI	GGNNCC	1 cut(s)	134
BmsI	GCATC	3 cut(s)	131, 292, 582
BsaBI	GATNNNNATC	1 cut(s)	495
BsaXI	ACNNNNNCTCC	1 cut(s)	27
Bsc4I	CCNNNNNNNGG	1 cut(s)	265
Bse1I	ACTGG	1 cut(s)	479
Bse3DI	GCAATG	2 cut(s)	348, 590
Bse8I	GATNNNNATC	1 cut(s)	495
BseGI	GGATG	2 cut(s)	122, 201
BseJI	GATNNNNATC	1 cut(s)	495
BseLI	CCNNNNNNNGG	1 cut(s)	265
BseMI	GCAATG	2 cut(s)	348, 590
BseMII	CTCAG	1 cut(s)	267
BseNI	ACTGG	1 cut(s)	479
BseRI	GAGGAG	2 cut(s)	9, 111
BseXI	GCAGC	2 cut(s)	60, 283
BsgI	GTGCAG	1 cut(s)	293
BshFI	GGCC	6 cut(s)	57, 176, 218, 281, 360, 504
BslI	CCNNNNNNNGG	1 cut(s)	265
BsmAI	GTCTC	1 cut(s)	339
BsnI	GGCC	6 cut(s)	57, 176, 218, 281, 360, 504
Bsp143I	GATC	1 cut(s)	596
BspACI	CCGC	2 cut(s)	51, 251
BspANI	GGCC	6 cut(s)	57, 176, 218, 281, 360, 504
BspCNI	CTCAG	1 cut(s)	268
BspLI	GGNNCC	1 cut(s)	134
BsrDI	GCAATG	2 cut(s)	348, 590
BsrI	ACTGG	1 cut(s)	479
BssMI	GATC	1 cut(s)	596
BssSI	CACGAG	2 cut(s)	127, 342
Bst2BI	CACGAG	2 cut(s)	127, 342
Bst4CI	ACNGT	1 cut(s)	552
Bst6I	CTCTTC	1 cut(s)	212
BstC8I	GCNNGC	2 cut(s)	147, 312
BstDEI	CTNAG	2 cut(s)	276, 464
BstF5I	GGATG	2 cut(s)	122, 201
BstKTI	GATC	1 cut(s)	599
BstMAI	GTCTC	1 cut(s)	339
BstMBI	GATC	1 cut(s)	596
BstMWI	GCNNNNNNNGC	4 cut(s)	224, 302, 311, 536
BstSFI	CTRYAG	1 cut(s)	117
BstV1I	GCAGC	2 cut(s)	60, 283
BsuRI	GGCC	6 cut(s)	57, 176, 218, 281, 360, 504
BtsCI	GGATG	2 cut(s)	122, 201
BtsI	GCAGTG	1 cut(s)	305
BtsIMutI	CAGTG	2 cut(s)	305, 480
Cac8I	GCNNGC	2 cut(s)	147, 312
Cfr13I	GGNCC	2 cut(s)	216, 502
Csp6I	GTAC	1 cut(s)	553
CviAII	CATG	1 cut(s)	59
CviQI	GTAC	1 cut(s)	553
DdeI	CTNAG	2 cut(s)	276, 464
DpnI	GATC	1 cut(s)	598
DpnII	GATC	1 cut(s)	596
EaeI	YGGCCR	3 cut(s)	55, 174, 358
Eam1104I	CTCTTC	1 cut(s)	212
EarI	CTCTTC	1 cut(s)	212
Eco147I	AGGCCT	1 cut(s)	281
Eco57I	CTGAAG	1 cut(s)	365
FaeI	CATG	1 cut(s)	62
FaiI	YATR	4 cut(s)	60, 214, 266, 489
FatI	CATG	1 cut(s)	58
FblI	GTMKAC	1 cut(s)	447
Fnu4HI	GCNGC	3 cut(s)	74, 251, 297
FokI	GGATG	2 cut(s)	109, 188
Fsp4HI	GCNGC	3 cut(s)	74, 251, 297
FspBI	CTAG	1 cut(s)	404
GluI	GCNGC	3 cut(s)	74, 251, 297
HaeIII	GGCC	6 cut(s)	57, 176, 218, 281, 360, 504
Hin1II	CATG	1 cut(s)	62
HindIII	AAGCTT	2 cut(s)	421, 518
HinfI	GANTC	1 cut(s)	8
Hpy166II	GTNNAC	1 cut(s)	448
Hpy188I	TCNGA	2 cut(s)	277, 419
Hpy188III	TCNNGA	1 cut(s)	289
Hpy8I	GTNNAC	1 cut(s)	448
Hpy99I	CGWCG	1 cut(s)	27
HpyAV	CCTTC	3 cut(s)	242, 286, 607
HpyCH4III	ACNGT	1 cut(s)	552
HpyCH4V	TGCA	4 cut(s)	305, 310, 341, 619
HpyF10VI	GCNNNNNNNGC	4 cut(s)	224, 302, 311, 536
HpyF3I	CTNAG	2 cut(s)	276, 464
Hsp92II	CATG	1 cut(s)	62
Kzo9I	GATC	1 cut(s)	596
LpnPI	CCDG	6 cut(s)	135, 273, 368, 485, 492, 541
Lsp1109I	GCAGC	2 cut(s)	60, 283
LweI	GCATC	3 cut(s)	131, 292, 582
MaeI	CTAG	1 cut(s)	404
MaeIII	GTNAC	1 cut(s)	152
MalI	GATC	1 cut(s)	598
MboI	GATC	1 cut(s)	596
MboII	GAAGA	5 cut(s)	94, 199, 371, 418, 622
MlsI	TGGCCA	2 cut(s)	57, 176
MluCI	AATT	3 cut(s)	364, 561, 585
MluNI	TGGCCA	2 cut(s)	57, 176
Mox20I	TGGCCA	2 cut(s)	57, 176
MscI	TGGCCA	2 cut(s)	57, 176
MseI	TTAA	2 cut(s)	321, 578
MslI	CAYNNNNRTG	2 cut(s)	127, 510
Msp20I	TGGCCA	2 cut(s)	57, 176
MwoI	GCNNNNNNNGC	4 cut(s)	224, 302, 311, 536
NdeII	GATC	1 cut(s)	596
NlaIII	CATG	1 cut(s)	62
NlaIV	GGNNCC	1 cut(s)	134
NmeAIII	GCCGAG	1 cut(s)	27
PceI	AGGCCT	1 cut(s)	281
PfeI	GAWTC	1 cut(s)	8
PkrI	GCNGC	3 cut(s)	75, 252, 298
PshBI	ATTAAT	1 cut(s)	321
PspN4I	GGNNCC	1 cut(s)	134
PspPI	GGNCC	2 cut(s)	216, 502
RsaI	GTAC	1 cut(s)	554
RsaNI	GTAC	1 cut(s)	553
RseI	CAYNNNNRTG	2 cut(s)	127, 510
SaqAI	TTAA	2 cut(s)	321, 578
SatI	GCNGC	3 cut(s)	74, 251, 297
Sau3AI	GATC	1 cut(s)	596
Sau96I	GGNCC	2 cut(s)	216, 502
SetI	ASST	9 cut(s)	46, 116, 151, 162, 247, 387, 425, 522, 618
SfaNI	GCATC	3 cut(s)	131, 292, 582
SfcI	CTRYAG	1 cut(s)	117
SmiMI	CAYNNNNRTG	2 cut(s)	127, 510
Sse9I	AATT	3 cut(s)	364, 561, 585
SseBI	AGGCCT	1 cut(s)	281
SsiI	CCGC	2 cut(s)	51, 251
SspMI	CTAG	1 cut(s)	404
StuI	AGGCCT	1 cut(s)	281
TaaI	ACNGT	1 cut(s)	552
TasI	AATT	3 cut(s)	364, 561, 585
TatI	WGTACW	1 cut(s)	552
TauI	GCSGC	1 cut(s)	253
TfiI	GAWTC	1 cut(s)	8
Tru1I	TTAA	2 cut(s)	321, 578
Tru9I	TTAA	2 cut(s)	321, 578
TscAI	CASTG	2 cut(s)	312, 480
TseI	GCWGC	2 cut(s)	73, 296
TspDTI	ATGAA	1 cut(s)	26
TspGWI	ACGGA	1 cut(s)	22
TspRI	CASTG	2 cut(s)	312, 480
VspI	ATTAAT	1 cut(s)	321
XapI	RAATTY	1 cut(s)	585
XmiI	GTMKAC	1 cut(s)	447
XspI	CTAG	1 cut(s)	404

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.