Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007868

Physical Location & Seq

Genomic Coordinates Reverse (-)

6762034 .. 6762754

Gene Structure 721 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G19508.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 246 bp

ATGAAGAAGGTGCTGAGAGTATACGGCGGCGTTATGAGGCTGGTGAGACTTTTGCCGGCGGATTCAAGGCCGTATTACGCCAAGTACGCCAGGGAGAATTTCGTTAATTACCGTGAAGTCGATCAAAGCGAAACATCCCTCGACGAACTCTTCCAGCGAGCCTATAATCACTCACTTTGGGTACTCAAGAAGTACTCAATTGACGAATCAGCAGCGACGAAGTTGAAAGAGATTTGTTTTGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Complex1_LYR

Protein Analysis

81

Amino Acids

9.64

Weight (kDa)

9.07

Isoelectric Point (pI)

33.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007868)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19508
fragaria_vesca	FvH4_2g04840 FvH4_2g04840 FvH4_2g04840 FvH4_2g04840 FvH4_2g04840 FvH4_2g04840 FvH4_2g04840
malus_domestica	MD00G1109400.v1.1 MD04G1005100.v1.1 MD05G1023600.v1.1
prunus_persica	Prupe.8G136900_v2.0.a1
pyrus_communis	pycom05g09110
rosa_chinensis	RchiOBHm_Chr6g0254661 RchiOBHm_Chr6g0254711
rosa_multiflora	Rmu_sc0000053.1_g000002 Rmu_sc0008789.1_g000005
rosa_roxburghii	Rroxscaffold_7G00210110 Rroxscaffold_7G00210660
rosa_rugosa	Rorug05G0554200
rosa_samantha	Rh6AG071300 Rh6CG062700 Rh6DG059900
rosa_wichuraiana	Rw6G006240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	21
AciI	CCGC	2 cut(s)	27, 59
AcsI	RAATTY	1 cut(s)	97
AfaI	GTAC	3 cut(s)	86, 183, 194
AgsI	TTSAA	3 cut(s)	66, 226, 242
AjnI	CCWGG	1 cut(s)	89
Alw26I	GTCTC	1 cut(s)	40
AoxI	GGCC	1 cut(s)	68
ApeKI	GCWGC	1 cut(s)	212
ApoI	RAATTY	1 cut(s)	97
AsuHPI	GGTGA	1 cut(s)	55
BbvI	GCAGC	1 cut(s)	224
BceAI	ACGGC	2 cut(s)	40, 55
BciT130I	CCWGG	1 cut(s)	91
BcoDI	GTCTC	1 cut(s)	40
BisI	GCNGC	2 cut(s)	28, 213
BlsI	GCNGC	2 cut(s)	29, 214
BmcAI	AGTACT	1 cut(s)	194
Bme1390I	CCNGG	1 cut(s)	91
BmrFI	CCNGG	1 cut(s)	91
BpuEI	CTTGAG	1 cut(s)	170
BsaJI	CCNNGG	1 cut(s)	90
Bse118I	RCCGGY	1 cut(s)	55
BseBI	CCWGG	1 cut(s)	91
BseDI	CCNNGG	1 cut(s)	90
BseGI	GGATG	1 cut(s)	134
BseMII	CTCAG	1 cut(s)	5
BseXI	GCAGC	1 cut(s)	224
BshFI	GGCC	1 cut(s)	70
BsiSI	CCGG	1 cut(s)	56
BsmAI	GTCTC	1 cut(s)	40
BsnI	GGCC	1 cut(s)	70
Bsp143I	GATC	1 cut(s)	121
BspACI	CCGC	2 cut(s)	27, 59
BspANI	GGCC	1 cut(s)	70
BspCNI	CTCAG	1 cut(s)	6
BsrFI	RCCGGY	1 cut(s)	55
BssAI	RCCGGY	1 cut(s)	55
BssECI	CCNNGG	1 cut(s)	90
BssMI	GATC	1 cut(s)	121
BssNAI	GTATAC	1 cut(s)	22
Bst1107I	GTATAC	1 cut(s)	22
Bst2UI	CCWGG	1 cut(s)	91
Bst4CI	ACNGT	1 cut(s)	113
Bst6I	CTCTTC	1 cut(s)	155
BstC8I	GCNNGC	2 cut(s)	57, 159
BstDEI	CTNAG	1 cut(s)	14
BstF5I	GGATG	1 cut(s)	134
BstKTI	GATC	1 cut(s)	124
BstMAI	GTCTC	1 cut(s)	40
BstMBI	GATC	1 cut(s)	121
BstMWI	GCNNNNNNNGC	1 cut(s)	86
BstNI	CCWGG	1 cut(s)	91
BstSCI	CCNGG	1 cut(s)	89
BstV1I	GCAGC	1 cut(s)	224
BstZ17I	GTATAC	1 cut(s)	22
BsuRI	GGCC	1 cut(s)	70
BtsCI	GGATG	1 cut(s)	134
Cac8I	GCNNGC	2 cut(s)	57, 159
Cfr10I	RCCGGY	1 cut(s)	55
Csp6I	GTAC	3 cut(s)	85, 182, 193
CviJI	RGCY	3 cut(s)	40, 70, 161
CviKI_1	RGCY	3 cut(s)	40, 70, 161
CviQI	GTAC	3 cut(s)	85, 182, 193
DdeI	CTNAG	1 cut(s)	14
DpnI	GATC	1 cut(s)	123
DpnII	GATC	1 cut(s)	121
Eam1104I	CTCTTC	1 cut(s)	155
EarI	CTCTTC	1 cut(s)	155
EciI	GGCGGA	1 cut(s)	74
EcoRII	CCWGG	1 cut(s)	89
FaiI	YATR	3 cut(s)	22, 35, 165
FblI	GTMKAC	1 cut(s)	21
Fnu4HI	GCNGC	2 cut(s)	28, 213
FokI	GGATG	1 cut(s)	121
Fsp4HI	GCNGC	2 cut(s)	28, 213
GluI	GCNGC	2 cut(s)	28, 213
HaeIII	GGCC	1 cut(s)	70
HapII	CCGG	1 cut(s)	56
HinfI	GANTC	2 cut(s)	62, 206
HpaII	CCGG	1 cut(s)	56
HphI	GGTGA	1 cut(s)	55
Hpy166II	GTNNAC	1 cut(s)	22
Hpy188III	TCNNGA	1 cut(s)	187
Hpy8I	GTNNAC	1 cut(s)	22
Hpy99I	CGWCG	2 cut(s)	146, 220
HpyCH4III	ACNGT	1 cut(s)	113
HpyF10VI	GCNNNNNNNGC	1 cut(s)	86
HpyF3I	CTNAG	1 cut(s)	14
KroI	GCCGGC	1 cut(s)	55
KroNI	GCCGGC	1 cut(s)	57
Kzo9I	GATC	1 cut(s)	121
LpnPI	CCDG	5 cut(s)	26, 69, 76, 103, 167
Lsp1109I	GCAGC	1 cut(s)	224
MalI	GATC	1 cut(s)	123
MboI	GATC	1 cut(s)	121
MboII	GAAGA	2 cut(s)	16, 142
MfeI	CAATTG	1 cut(s)	198
MluCI	AATT	3 cut(s)	97, 106, 198
MnlI	CCTC	2 cut(s)	30, 149
MroNI	GCCGGC	1 cut(s)	55
MseI	TTAA	1 cut(s)	105
MspI	CCGG	1 cut(s)	56
MspR9I	CCNGG	1 cut(s)	91
MunI	CAATTG	1 cut(s)	198
MvaI	CCWGG	1 cut(s)	91
MwoI	GCNNNNNNNGC	1 cut(s)	86
NaeI	GCCGGC	1 cut(s)	57
NdeII	GATC	1 cut(s)	121
NgoMIV	GCCGGC	1 cut(s)	55
PcsI	WCGNNNNNNNCGW	1 cut(s)	126
PdiI	GCCGGC	1 cut(s)	57
PfeI	GAWTC	2 cut(s)	62, 206
PkrI	GCNGC	2 cut(s)	29, 214
Psp6I	CCWGG	1 cut(s)	89
PspGI	CCWGG	1 cut(s)	89
RsaI	GTAC	3 cut(s)	86, 183, 194
RsaNI	GTAC	3 cut(s)	85, 182, 193
SaqAI	TTAA	1 cut(s)	105
SatI	GCNGC	2 cut(s)	28, 213
Sau3AI	GATC	1 cut(s)	121
ScaI	AGTACT	1 cut(s)	194
ScrFI	CCNGG	1 cut(s)	91
SetI	ASST	1 cut(s)	12
SmlI	CTYRAG	1 cut(s)	185
SmoI	CTYRAG	1 cut(s)	185
Sse9I	AATT	3 cut(s)	97, 106, 198
SsiI	CCGC	2 cut(s)	27, 59
StyD4I	CCNGG	1 cut(s)	89
TaaI	ACNGT	1 cut(s)	113
TaqI	TCGA	2 cut(s)	120, 141
TasI	AATT	3 cut(s)	97, 106, 198
TatI	WGTACW	1 cut(s)	192
TauI	GCSGC	1 cut(s)	30
TfiI	GAWTC	2 cut(s)	62, 206
Tru1I	TTAA	1 cut(s)	105
Tru9I	TTAA	1 cut(s)	105
TseI	GCWGC	1 cut(s)	212
TspDTI	ATGAA	1 cut(s)	17
XapI	RAATTY	1 cut(s)	97
XmiI	GTMKAC	1 cut(s)	21
ZrmI	AGTACT	1 cut(s)	194

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.