Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0007868

Physical Location & Seq

Genomic Coordinates Reverse (-)

628268 .. 628832

Gene Structure 565 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1005100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 249 bp

ATGGAGAAAGCATTGAAAATCTACGGGGAGGTTCTGAGATTGGTGAGGAGGTTACCAAAGGACTCTCAACCTTACTACGCCAAGTACGCCCGCGAGAACTTCGTCAATTACAGAGAGGTCGAGGCCAACGACGACAAGGCCCTCCACGATCTCTTCCTCAGGGCCTACAATCATTCCCTCTGGGTCCTAAATAAGTACTCTGTGGATGAATCTGCGGCTGATAAGTTGAAGAAAATCTGCTCCGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Complex1_LYR

Protein Analysis

83

Amino Acids

9.73

Weight (kDa)

8.66

Isoelectric Point (pI)

29.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007868)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19508
fragaria_vesca	FvH4_2g04840 FvH4_2g04840 FvH4_2g04840 FvH4_2g04840 FvH4_2g04840 FvH4_2g04840 FvH4_2g04840
malus_domestica	MD00G1109400.v1.1 MD04G1005100.v1.1 MD05G1023600.v1.1
prunus_persica	Prupe.8G136900_v2.0.a1
pyrus_communis	pycom05g09110
rosa_chinensis	RchiOBHm_Chr6g0254661 RchiOBHm_Chr6g0254711
rosa_multiflora	Rmu_sc0000053.1_g000002 Rmu_sc0008789.1_g000005
rosa_roxburghii	Rroxscaffold_7G00210110 Rroxscaffold_7G00210660
rosa_rugosa	Rorug05G0554200
rosa_samantha	Rh6AG071300 Rh6CG062700 Rh6DG059900
rosa_wichuraiana	Rw6G006240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	93
AciI	CCGC	2 cut(s)	91, 215
AfaI	GTAC	2 cut(s)	86, 197
AgsI	TTSAA	2 cut(s)	16, 229
AoxI	GGCC	3 cut(s)	123, 138, 162
AspS9I	GGNCC	3 cut(s)	139, 162, 184
AsuHPI	GGTGA	1 cut(s)	55
AvaII	GGWCC	1 cut(s)	184
AxyI	CCTNAGG	1 cut(s)	158
BisI	GCNGC	1 cut(s)	216
BlsI	GCNGC	1 cut(s)	217
BmcAI	AGTACT	1 cut(s)	197
Bme18I	GGWCC	1 cut(s)	184
BmgT120I	GGNCC	3 cut(s)	139, 162, 184
BmiI	GGNNCC	1 cut(s)	185
Bse21I	CCTNAGG	1 cut(s)	158
BseGI	GGATG	1 cut(s)	211
BseMII	CTCAG	2 cut(s)	26, 172
BseRI	GAGGAG	1 cut(s)	61
Bsh1236I	CGCG	1 cut(s)	93
BshFI	GGCC	3 cut(s)	125, 140, 164
BsnI	GGCC	3 cut(s)	125, 140, 164
Bsp143I	GATC	1 cut(s)	148
BspACI	CCGC	2 cut(s)	91, 215
BspANI	GGCC	3 cut(s)	125, 140, 164
BspCNI	CTCAG	2 cut(s)	27, 171
BspFNI	CGCG	1 cut(s)	93
BspLI	GGNNCC	1 cut(s)	185
BssMI	GATC	1 cut(s)	148
Bst6I	CTCTTC	1 cut(s)	158
BstC8I	GCNNGC	1 cut(s)	91
BstDEI	CTNAG	2 cut(s)	35, 158
BstEII	GGTNACC	1 cut(s)	51
BstF5I	GGATG	1 cut(s)	211
BstFNI	CGCG	1 cut(s)	93
BstKTI	GATC	1 cut(s)	151
BstMBI	GATC	1 cut(s)	148
BstMWI	GCNNNNNNNGC	1 cut(s)	86
BstPI	GGTNACC	1 cut(s)	51
BstUI	CGCG	1 cut(s)	93
Bsu36I	CCTNAGG	1 cut(s)	158
BsuRI	GGCC	3 cut(s)	125, 140, 164
BtsCI	GGATG	1 cut(s)	211
Cac8I	GCNNGC	1 cut(s)	91
Cfr13I	GGNCC	3 cut(s)	139, 162, 184
Csp6I	GTAC	2 cut(s)	85, 196
CviJI	RGCY	4 cut(s)	125, 140, 164, 218
CviKI_1	RGCY	4 cut(s)	125, 140, 164, 218
CviQI	GTAC	2 cut(s)	85, 196
DdeI	CTNAG	2 cut(s)	35, 158
DpnI	GATC	1 cut(s)	150
DpnII	GATC	1 cut(s)	148
Eam1104I	CTCTTC	1 cut(s)	158
EarI	CTCTTC	1 cut(s)	158
Eco47I	GGWCC	1 cut(s)	184
Eco81I	CCTNAGG	1 cut(s)	158
Eco91I	GGTNACC	1 cut(s)	51
EcoO109I	RGGNCCY	3 cut(s)	139, 162, 184
EcoO65I	GGTNACC	1 cut(s)	51
FauI	CCCGC	1 cut(s)	98
Fnu4HI	GCNGC	1 cut(s)	216
FokI	GGATG	1 cut(s)	218
Fsp4HI	GCNGC	1 cut(s)	216
GluI	GCNGC	1 cut(s)	216
HaeIII	GGCC	3 cut(s)	125, 140, 164
HinfI	GANTC	2 cut(s)	62, 209
HphI	GGTGA	1 cut(s)	55
Hpy188I	TCNGA	2 cut(s)	36, 244
Hpy99I	CGWCG	1 cut(s)	134
HpyF10VI	GCNNNNNNNGC	1 cut(s)	86
HpyF3I	CTNAG	2 cut(s)	35, 158
Kzo9I	GATC	1 cut(s)	148
LmnI	GCTCC	1 cut(s)	245
LpnPI	CCDG	2 cut(s)	145, 166
MaeIII	GTNAC	1 cut(s)	51
MalI	GATC	1 cut(s)	150
MboI	GATC	1 cut(s)	148
MboII	GAAGA	2 cut(s)	145, 241
MluCI	AATT	1 cut(s)	106
MlyI	GAGTC	1 cut(s)	56
MnlI	CCTC	8 cut(s)	22, 39, 42, 109, 115, 152, 167, 188
MvnI	CGCG	1 cut(s)	93
MwoI	GCNNNNNNNGC	1 cut(s)	86
NdeII	GATC	1 cut(s)	148
NlaIV	GGNNCC	1 cut(s)	185
PcsI	WCGNNNNNNNCGW	1 cut(s)	126
PfeI	GAWTC	1 cut(s)	209
PkrI	GCNGC	1 cut(s)	217
PleI	GAGTC	1 cut(s)	56
PpsI	GAGTC	1 cut(s)	56
PpuMI	RGGWCCY	1 cut(s)	184
Psp5II	RGGWCCY	1 cut(s)	184
PspEI	GGTNACC	1 cut(s)	51
PspN4I	GGNNCC	1 cut(s)	185
PspPI	GGNCC	3 cut(s)	139, 162, 184
PspPPI	RGGWCCY	1 cut(s)	184
RsaI	GTAC	2 cut(s)	86, 197
RsaNI	GTAC	2 cut(s)	85, 196
SatI	GCNGC	1 cut(s)	216
Sau3AI	GATC	1 cut(s)	148
Sau96I	GGNCC	3 cut(s)	139, 162, 184
ScaI	AGTACT	1 cut(s)	197
SchI	GAGTC	1 cut(s)	56
SetI	ASST	4 cut(s)	33, 53, 73, 120
SinI	GGWCC	1 cut(s)	184
Sse9I	AATT	1 cut(s)	106
SsiI	CCGC	2 cut(s)	91, 215
TaqI	TCGA	1 cut(s)	120
TasI	AATT	1 cut(s)	106
TatI	WGTACW	1 cut(s)	195
TauI	GCSGC	1 cut(s)	218
TfiI	GAWTC	1 cut(s)	209
TspDTI	ATGAA	1 cut(s)	222
VpaK11BI	GGWCC	1 cut(s)	184
ZrmI	AGTACT	1 cut(s)	197

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.