FvH4_2g04840

Belongs to the complex I LYR family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0007868
Physical Location & Seq
Forward (+)
3761489 .. 3764682
3194 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g04840.t3

Sequence Viewer

Length: 249 bp
ATGTTGAAAGCTTTGAGAATCTACGCGGAGGCTCTGAGATTGGTGCGGCGGTTGCCCAAGGACTCAAGGCCTTACTACGCCAAGTATCTTCGCGAGAACTTCGTCAATTACAGAGAGGTCGAGGTTAACGATGACCAAGCTCTCCACGACCTCTTCAATCGCGCTTACCTTCATTCCCTCTGGGTCCTCAACAAGTATTCTGTTGATGAATCCGCCGCCGATAAGTTGAAGAAGATCTGCACCGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Complex1_LYR

Protein Analysis

83

Amino Acids

9.84

Weight (kDa)

9.07

Isoelectric Point (pI)

39.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Complex1_LYR PF05347 3 - 56 6.7e-06 Complex 1 protein (LYR family)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 3 cut(s) 26, 93, 162
AciI CCGC 5 cut(s) 26, 46, 49, 213, 216
AgsI TTSAA 3 cut(s) 7, 157, 229
AluBI AGCT 2 cut(s) 11, 140
AluI AGCT 2 cut(s) 11, 140
AoxI GGCC 1 cut(s) 68
AspLEI GCGC 1 cut(s) 164
AspS9I GGNCC 1 cut(s) 184
AvaII GGWCC 1 cut(s) 184
BglII AGATCT 1 cut(s) 234
BisI GCNGC 2 cut(s) 47, 216
BlsI GCNGC 2 cut(s) 48, 217
Bme18I GGWCC 1 cut(s) 184
BmgT120I GGNCC 1 cut(s) 184
BmiI GGNNCC 1 cut(s) 185
BpuEI CTTGAG 1 cut(s) 49
BsaJI CCNNGG 1 cut(s) 57
BseDI CCNNGG 1 cut(s) 57
BseMII CTCAG 1 cut(s) 26
BsgI GTGCAG 1 cut(s) 223
Bsh1236I CGCG 3 cut(s) 26, 93, 162
BshFI GGCC 1 cut(s) 70
BsnI GGCC 1 cut(s) 70
Bsp143I GATC 1 cut(s) 234
Bsp68I TCGCGA 1 cut(s) 93
BspACI CCGC 5 cut(s) 26, 46, 49, 213, 216
BspANI GGCC 1 cut(s) 70
BspCNI CTCAG 1 cut(s) 27
BspFNI CGCG 3 cut(s) 26, 93, 162
BspLI GGNNCC 1 cut(s) 185
BssECI CCNNGG 1 cut(s) 57
BssMI GATC 1 cut(s) 234
BssT1I CCWWGG 1 cut(s) 57
Bst6I CTCTTC 1 cut(s) 158
BstDEI CTNAG 1 cut(s) 35
BstFNI CGCG 3 cut(s) 26, 93, 162
BstHHI GCGC 1 cut(s) 164
BstKTI GATC 1 cut(s) 237
BstMBI GATC 1 cut(s) 234
BstMWI GCNNNNNNNGC 1 cut(s) 52
BstUI CGCG 3 cut(s) 26, 93, 162
BstX2I RGATCY 1 cut(s) 234
BstYI RGATCY 1 cut(s) 234
BsuRI GGCC 1 cut(s) 70
BtuMI TCGCGA 1 cut(s) 93
CfoI GCGC 1 cut(s) 164
Cfr13I GGNCC 1 cut(s) 184
CviJI RGCY 4 cut(s) 11, 32, 70, 140
CviKI_1 RGCY 4 cut(s) 11, 32, 70, 140
DdeI CTNAG 1 cut(s) 35
DpnI GATC 1 cut(s) 236
DpnII GATC 1 cut(s) 234
Eam1104I CTCTTC 1 cut(s) 158
EarI CTCTTC 1 cut(s) 158
EciI GGCGGA 1 cut(s) 202
Eco130I CCWWGG 1 cut(s) 57
Eco147I AGGCCT 1 cut(s) 70
Eco47I GGWCC 1 cut(s) 184
EcoO109I RGGNCCY 1 cut(s) 184
EcoT14I CCWWGG 1 cut(s) 57
ErhI CCWWGG 1 cut(s) 57
Fnu4HI GCNGC 2 cut(s) 47, 216
Fsp4HI GCNGC 2 cut(s) 47, 216
GlaI GCGC 1 cut(s) 163
GluI GCNGC 2 cut(s) 47, 216
HaeIII GGCC 1 cut(s) 70
HhaI GCGC 1 cut(s) 164
Hin6I GCGC 1 cut(s) 162
HinP1I GCGC 1 cut(s) 162
HincII GTYRAC 1 cut(s) 127
HindII GTYRAC 1 cut(s) 127
HindIII AAGCTT 1 cut(s) 9
HinfI GANTC 3 cut(s) 18, 62, 209
HpaI GTTAAC 1 cut(s) 127
Hpy166II GTNNAC 1 cut(s) 127
Hpy188I TCNGA 1 cut(s) 36
Hpy188III TCNNGA 1 cut(s) 92
Hpy8I GTNNAC 1 cut(s) 127
HpyAV CCTTC 1 cut(s) 179
HpyCH4V TGCA 1 cut(s) 240
HpyF10VI GCNNNNNNNGC 1 cut(s) 52
HpyF3I CTNAG 1 cut(s) 35
HspAI GCGC 1 cut(s) 162
KspAI GTTAAC 1 cut(s) 127
Kzo9I GATC 1 cut(s) 234
LpnPI CCDG 1 cut(s) 166
MalI GATC 1 cut(s) 236
MboI GATC 1 cut(s) 234
MboII GAAGA 4 cut(s) 80, 145, 241, 244
MflI RGATCY 1 cut(s) 234
MluCI AATT 1 cut(s) 106
MlyI GAGTC 1 cut(s) 56
MnlI CCTC 6 cut(s) 22, 109, 115, 161, 188, 197
MseI TTAA 1 cut(s) 126
MvnI CGCG 3 cut(s) 26, 93, 162
MwoI GCNNNNNNNGC 1 cut(s) 52
NdeII GATC 1 cut(s) 234
NlaIV GGNNCC 1 cut(s) 185
NruI TCGCGA 1 cut(s) 93
PceI AGGCCT 1 cut(s) 70
PcsI WCGNNNNNNNCGW 1 cut(s) 126
PfeI GAWTC 2 cut(s) 18, 209
PkrI GCNGC 2 cut(s) 48, 217
PleI GAGTC 1 cut(s) 56
PpsI GAGTC 1 cut(s) 56
PpuMI RGGWCCY 1 cut(s) 184
Psp5II RGGWCCY 1 cut(s) 184
PspN4I GGNNCC 1 cut(s) 185
PspPI GGNCC 1 cut(s) 184
PspPPI RGGWCCY 1 cut(s) 184
PsuI RGATCY 1 cut(s) 234
RruI TCGCGA 1 cut(s) 93
SaqAI TTAA 1 cut(s) 126
SatI GCNGC 2 cut(s) 47, 216
Sau3AI GATC 1 cut(s) 234
Sau96I GGNCC 1 cut(s) 184
SchI GAGTC 1 cut(s) 56
SetI ASST 6 cut(s) 13, 120, 126, 142, 153, 171
SinI GGWCC 1 cut(s) 184
SmlI CTYRAG 1 cut(s) 64
SmoI CTYRAG 1 cut(s) 64
Sse9I AATT 1 cut(s) 106
SseBI AGGCCT 1 cut(s) 70
SsiI CCGC 5 cut(s) 26, 46, 49, 213, 216
StuI AGGCCT 1 cut(s) 70
StyI CCWWGG 1 cut(s) 57
TaqI TCGA 1 cut(s) 120
TasI AATT 1 cut(s) 106
TauI GCSGC 2 cut(s) 49, 218
TfiI GAWTC 2 cut(s) 18, 209
Tru1I TTAA 1 cut(s) 126
Tru9I TTAA 1 cut(s) 126
TspDTI ATGAA 2 cut(s) 161, 222
VpaK11BI GGWCC 1 cut(s) 184
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.