Prupe.8G136900_v2.0.a1

Belongs to the complex I LYR family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0007868
Physical Location & Seq
Reverse (-)
15680242 .. 15681087
846 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G136900.1

Sequence Viewer

Length: 249 bp
ATGGAGAAAGCTTTGAGAATCTACGCAGAGGTTCTGAGATTGGTGAGGCGGTTGCCGGAGGACACGAGGCCTTACTACGCCAAGTATGCGCGCGAAAACTTCGTGAATTACAGAGAGGTCGAGGCCGGAGATGACCAAGCCCTCCACGAGCTCTTCCATAGGGCATACAAGCATTCGCTCTGGGTCCTGAACAAGTACTCTGTGGATGAATCTGCGGCGGACAAGTTGAGGAAGATCTGCTCCGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Complex1_LYR

Protein Analysis

83

Amino Acids

9.79

Weight (kDa)

8.73

Isoelectric Point (pI)

38.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 91, 93
AciI CCGC 4 cut(s) 49, 215, 218, 243
AfaI GTAC 1 cut(s) 197
AluBI AGCT 2 cut(s) 11, 151
AluI AGCT 2 cut(s) 11, 151
Alw21I GWGCWC 1 cut(s) 153
AoxI GGCC 2 cut(s) 68, 123
AspLEI GCGC 2 cut(s) 91, 93
AspS9I GGNCC 1 cut(s) 184
AsuHPI GGTGA 1 cut(s) 55
AvaII GGWCC 1 cut(s) 184
BanII GRGCYC 1 cut(s) 153
BauI CACGAG 2 cut(s) 64, 146
Bbv12I GWGCWC 1 cut(s) 153
BglII AGATCT 1 cut(s) 234
BisI GCNGC 1 cut(s) 216
BlsI GCNGC 1 cut(s) 217
BmcAI AGTACT 1 cut(s) 197
Bme18I GGWCC 1 cut(s) 184
BmgT120I GGNCC 1 cut(s) 184
BmiI GGNNCC 1 cut(s) 185
BseGI GGATG 1 cut(s) 211
BseMII CTCAG 1 cut(s) 26
BsePI GCGCGC 1 cut(s) 89
Bsh1236I CGCG 2 cut(s) 91, 93
BshFI GGCC 2 cut(s) 70, 125
BsiHKAI GWGCWC 1 cut(s) 153
BsiSI CCGG 2 cut(s) 56, 126
BsmI GAATGC 1 cut(s) 172
BsnI GGCC 2 cut(s) 70, 125
Bsp1286I GDGCHC 1 cut(s) 153
Bsp143I GATC 1 cut(s) 234
BspACI CCGC 4 cut(s) 49, 215, 218, 243
BspANI GGCC 2 cut(s) 70, 125
BspCNI CTCAG 1 cut(s) 27
BspFNI CGCG 2 cut(s) 91, 93
BspLI GGNNCC 1 cut(s) 185
BspQI GCTCTTC 1 cut(s) 158
BssHII GCGCGC 1 cut(s) 89
BssMI GATC 1 cut(s) 234
BssSI CACGAG 2 cut(s) 64, 146
Bst2BI CACGAG 2 cut(s) 64, 146
Bst6I CTCTTC 1 cut(s) 158
BstC8I GCNNGC 1 cut(s) 91
BstDEI CTNAG 2 cut(s) 35, 246
BstF5I GGATG 1 cut(s) 211
BstFNI CGCG 2 cut(s) 91, 93
BstHHI GCGC 2 cut(s) 91, 93
BstKTI GATC 1 cut(s) 237
BstMBI GATC 1 cut(s) 234
BstMWI GCNNNNNNNGC 1 cut(s) 86
BstUI CGCG 2 cut(s) 91, 93
BstX2I RGATCY 1 cut(s) 234
BstYI RGATCY 1 cut(s) 234
BsuRI GGCC 2 cut(s) 70, 125
BtsCI GGATG 1 cut(s) 211
Cac8I GCNNGC 1 cut(s) 91
CfoI GCGC 2 cut(s) 91, 93
Cfr13I GGNCC 1 cut(s) 184
Csp6I GTAC 1 cut(s) 196
CviJI RGCY 5 cut(s) 11, 70, 125, 140, 151
CviKI_1 RGCY 5 cut(s) 11, 70, 125, 140, 151
CviQI GTAC 1 cut(s) 196
DdeI CTNAG 2 cut(s) 35, 246
DpnI GATC 1 cut(s) 236
DpnII GATC 1 cut(s) 234
Eam1104I CTCTTC 1 cut(s) 158
EarI CTCTTC 1 cut(s) 158
EciI GGCGGA 1 cut(s) 233
Ecl136II GAGCTC 1 cut(s) 151
Eco147I AGGCCT 1 cut(s) 70
Eco24I GRGCYC 1 cut(s) 153
Eco47I GGWCC 1 cut(s) 184
Eco53kI GAGCTC 1 cut(s) 151
EcoICRI GAGCTC 1 cut(s) 151
EcoO109I RGGNCCY 1 cut(s) 184
EcoT38I GRGCYC 1 cut(s) 153
FaiI YATR 3 cut(s) 87, 159, 166
Fnu4HI GCNGC 1 cut(s) 216
FokI GGATG 1 cut(s) 218
FriOI GRGCYC 1 cut(s) 153
Fsp4HI GCNGC 1 cut(s) 216
GlaI GCGC 2 cut(s) 90, 92
GluI GCNGC 1 cut(s) 216
HaeIII GGCC 2 cut(s) 70, 125
HapII CCGG 2 cut(s) 56, 126
HhaI GCGC 2 cut(s) 91, 93
Hin6I GCGC 2 cut(s) 89, 91
HinP1I GCGC 2 cut(s) 89, 91
HindIII AAGCTT 1 cut(s) 9
HinfI GANTC 2 cut(s) 18, 209
HpaII CCGG 2 cut(s) 56, 126
HphI GGTGA 1 cut(s) 55
Hpy188I TCNGA 1 cut(s) 36
Hpy188III TCNNGA 2 cut(s) 103, 187
HpyF10VI GCNNNNNNNGC 1 cut(s) 86
HpyF3I CTNAG 2 cut(s) 35, 246
HspAI GCGC 2 cut(s) 89, 91
Kzo9I GATC 1 cut(s) 234
LguI GCTCTTC 1 cut(s) 158
LmnI GCTCC 1 cut(s) 245
LpnPI CCDG 4 cut(s) 69, 139, 166, 200
MalI GATC 1 cut(s) 236
MboI GATC 1 cut(s) 234
MboII GAAGA 2 cut(s) 145, 244
MflI RGATCY 1 cut(s) 234
MhlI GDGCHC 1 cut(s) 153
MluCI AATT 1 cut(s) 106
MnlI CCTC 8 cut(s) 22, 39, 52, 60, 109, 115, 152, 222
MspI CCGG 2 cut(s) 56, 126
Mva1269I GAATGC 1 cut(s) 172
MvnI CGCG 2 cut(s) 91, 93
MwoI GCNNNNNNNGC 1 cut(s) 86
NdeII GATC 1 cut(s) 234
NlaIV GGNNCC 1 cut(s) 185
PauI GCGCGC 1 cut(s) 89
PceI AGGCCT 1 cut(s) 70
PciSI GCTCTTC 1 cut(s) 158
PctI GAATGC 1 cut(s) 172
PfeI GAWTC 2 cut(s) 18, 209
PkrI GCNGC 1 cut(s) 217
PpuMI RGGWCCY 1 cut(s) 184
Psp124BI GAGCTC 1 cut(s) 153
Psp5II RGGWCCY 1 cut(s) 184
PspN4I GGNNCC 1 cut(s) 185
PspPI GGNCC 1 cut(s) 184
PspPPI RGGWCCY 1 cut(s) 184
PsuI RGATCY 1 cut(s) 234
PteI GCGCGC 1 cut(s) 89
RsaI GTAC 1 cut(s) 197
RsaNI GTAC 1 cut(s) 196
SacI GAGCTC 1 cut(s) 153
SapI GCTCTTC 1 cut(s) 158
SatI GCNGC 1 cut(s) 216
Sau3AI GATC 1 cut(s) 234
Sau96I GGNCC 1 cut(s) 184
ScaI AGTACT 1 cut(s) 197
SduI GDGCHC 1 cut(s) 153
SetI ASST 4 cut(s) 13, 33, 120, 153
SinI GGWCC 1 cut(s) 184
Sse9I AATT 1 cut(s) 106
SseBI AGGCCT 1 cut(s) 70
SsiI CCGC 4 cut(s) 49, 215, 218, 243
SstI GAGCTC 1 cut(s) 153
StuI AGGCCT 1 cut(s) 70
TaqI TCGA 1 cut(s) 120
TasI AATT 1 cut(s) 106
TatI WGTACW 1 cut(s) 195
TauI GCSGC 1 cut(s) 218
TfiI GAWTC 2 cut(s) 18, 209
TspDTI ATGAA 1 cut(s) 222
VpaK11BI GGWCC 1 cut(s) 184
ZrmI AGTACT 1 cut(s) 197
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.