pycom05g09110

Belongs to the complex I LYR family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
Physical Location & Seq
Reverse (-)
12136467 .. 12136826
360 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g09110.2

Sequence Viewer

Length: 249 bp
ATGAAGAAAGCATTGAAAATCTACGGGGAGGTTCTGAGATTGGTGAGGAGGTTGCCAAAGGACTCTCAACCTTACTACGCCAAGTACGCCCGCGAGAACTTCGTCAATTACAGAGAGGTCGAGGCCAACGACGACCAAGCCCTCCACGATCTCTTCCTCAGGGCCTACAATCATTCCCTCTGGGTCCTCAATAAGTACTCTGTGGACGAATCTGCGGCTGATAAGTTGAAGAAAATCTGCTCCGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

83

Amino Acids

9.73

Weight (kDa)

9.01

Isoelectric Point (pI)

30.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 93
AciI CCGC 2 cut(s) 91, 215
AfaI GTAC 2 cut(s) 86, 197
AgsI TTSAA 2 cut(s) 16, 229
AoxI GGCC 2 cut(s) 123, 162
AspS9I GGNCC 2 cut(s) 162, 184
AsuHPI GGTGA 1 cut(s) 55
AvaII GGWCC 1 cut(s) 184
AxyI CCTNAGG 1 cut(s) 158
BisI GCNGC 1 cut(s) 216
BlsI GCNGC 1 cut(s) 217
BmcAI AGTACT 1 cut(s) 197
Bme18I GGWCC 1 cut(s) 184
BmgT120I GGNCC 2 cut(s) 162, 184
BmiI GGNNCC 1 cut(s) 185
Bse21I CCTNAGG 1 cut(s) 158
BseMII CTCAG 2 cut(s) 26, 172
BseRI GAGGAG 1 cut(s) 61
Bsh1236I CGCG 1 cut(s) 93
BshFI GGCC 2 cut(s) 125, 164
BsnI GGCC 2 cut(s) 125, 164
Bsp143I GATC 1 cut(s) 148
BspACI CCGC 2 cut(s) 91, 215
BspANI GGCC 2 cut(s) 125, 164
BspCNI CTCAG 2 cut(s) 27, 171
BspFNI CGCG 1 cut(s) 93
BspLI GGNNCC 1 cut(s) 185
BssMI GATC 1 cut(s) 148
Bst6I CTCTTC 1 cut(s) 158
BstC8I GCNNGC 1 cut(s) 91
BstDEI CTNAG 2 cut(s) 35, 158
BstFNI CGCG 1 cut(s) 93
BstKTI GATC 1 cut(s) 151
BstMBI GATC 1 cut(s) 148
BstMWI GCNNNNNNNGC 1 cut(s) 86
BstUI CGCG 1 cut(s) 93
Bsu36I CCTNAGG 1 cut(s) 158
BsuRI GGCC 2 cut(s) 125, 164
Cac8I GCNNGC 1 cut(s) 91
Cfr13I GGNCC 2 cut(s) 162, 184
Csp6I GTAC 2 cut(s) 85, 196
CviJI RGCY 4 cut(s) 125, 140, 164, 218
CviKI_1 RGCY 4 cut(s) 125, 140, 164, 218
CviQI GTAC 2 cut(s) 85, 196
DdeI CTNAG 2 cut(s) 35, 158
DpnI GATC 1 cut(s) 150
DpnII GATC 1 cut(s) 148
Eam1104I CTCTTC 1 cut(s) 158
EarI CTCTTC 1 cut(s) 158
Eco47I GGWCC 1 cut(s) 184
Eco81I CCTNAGG 1 cut(s) 158
EcoO109I RGGNCCY 2 cut(s) 162, 184
FauI CCCGC 1 cut(s) 98
Fnu4HI GCNGC 1 cut(s) 216
Fsp4HI GCNGC 1 cut(s) 216
GluI GCNGC 1 cut(s) 216
HaeIII GGCC 2 cut(s) 125, 164
HinfI GANTC 2 cut(s) 62, 209
HphI GGTGA 1 cut(s) 55
Hpy166II GTNNAC 1 cut(s) 205
Hpy188I TCNGA 2 cut(s) 36, 244
Hpy8I GTNNAC 1 cut(s) 205
Hpy99I CGWCG 1 cut(s) 134
HpyF10VI GCNNNNNNNGC 1 cut(s) 86
HpyF3I CTNAG 2 cut(s) 35, 158
Kzo9I GATC 1 cut(s) 148
LmnI GCTCC 1 cut(s) 245
LpnPI CCDG 2 cut(s) 145, 166
MalI GATC 1 cut(s) 150
MboI GATC 1 cut(s) 148
MboII GAAGA 3 cut(s) 16, 145, 241
MluCI AATT 1 cut(s) 106
MlyI GAGTC 1 cut(s) 56
MnlI CCTC 9 cut(s) 22, 39, 42, 109, 115, 152, 167, 188, 197
MvnI CGCG 1 cut(s) 93
MwoI GCNNNNNNNGC 1 cut(s) 86
NdeII GATC 1 cut(s) 148
NlaIV GGNNCC 1 cut(s) 185
PcsI WCGNNNNNNNCGW 1 cut(s) 126
PfeI GAWTC 1 cut(s) 209
PkrI GCNGC 1 cut(s) 217
PleI GAGTC 1 cut(s) 56
PpsI GAGTC 1 cut(s) 56
PpuMI RGGWCCY 1 cut(s) 184
Psp5II RGGWCCY 1 cut(s) 184
PspN4I GGNNCC 1 cut(s) 185
PspPI GGNCC 2 cut(s) 162, 184
PspPPI RGGWCCY 1 cut(s) 184
RsaI GTAC 2 cut(s) 86, 197
RsaNI GTAC 2 cut(s) 85, 196
SatI GCNGC 1 cut(s) 216
Sau3AI GATC 1 cut(s) 148
Sau96I GGNCC 2 cut(s) 162, 184
ScaI AGTACT 1 cut(s) 197
SchI GAGTC 1 cut(s) 56
SetI ASST 4 cut(s) 33, 53, 73, 120
SinI GGWCC 1 cut(s) 184
Sse9I AATT 1 cut(s) 106
SsiI CCGC 2 cut(s) 91, 215
TaqI TCGA 1 cut(s) 120
TasI AATT 1 cut(s) 106
TatI WGTACW 1 cut(s) 195
TauI GCSGC 1 cut(s) 218
TfiI GAWTC 1 cut(s) 209
TspDTI ATGAA 1 cut(s) 17
VpaK11BI GGWCC 1 cut(s) 184
ZrmI AGTACT 1 cut(s) 197
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.