Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0007868

Physical Location & Seq

Genomic Coordinates Reverse (-)

3905370 .. 3908329

Gene Structure 2960 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1023600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 249 bp

ATGGAGAAAGCATTGAAAATCTACGCGGAAGTTGTGAGATTGGTGAGGAGGTTGCCAAAGGACTCTCAATCGTACTATGCTAAGTACGCCCGTGAGAACTTCGTCAATTACAGAGAGGTCGAGGCCAACGACGACCAAGCCCTCCACGAGCTCTTCCTCAGGGCCTACAATCACTCCCTTTGGGTCCTCAACAAGTGCTTAGTGGACAAATCTGCGGCCGAGAAGTTGAAGAAAATCTGCTCCACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Complex1_LYR

Protein Analysis

83

Amino Acids

9.7

Weight (kDa)

9.14

Isoelectric Point (pI)

36.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007868)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19508
fragaria_vesca	FvH4_2g04840 FvH4_2g04840 FvH4_2g04840 FvH4_2g04840 FvH4_2g04840 FvH4_2g04840 FvH4_2g04840
malus_domestica	MD00G1109400.v1.1 MD04G1005100.v1.1 MD05G1023600.v1.1
prunus_persica	Prupe.8G136900_v2.0.a1
pyrus_communis	pycom05g09110
rosa_chinensis	RchiOBHm_Chr6g0254661 RchiOBHm_Chr6g0254711
rosa_multiflora	Rmu_sc0000053.1_g000002 Rmu_sc0008789.1_g000005
rosa_roxburghii	Rroxscaffold_7G00210110 Rroxscaffold_7G00210660
rosa_rugosa	Rorug05G0554200
rosa_samantha	Rh6AG071300 Rh6CG062700 Rh6DG059900
rosa_wichuraiana	Rw6G006240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	26
AciI	CCGC	2 cut(s)	26, 215
AcoI	YGGCCR	1 cut(s)	216
AfaI	GTAC	2 cut(s)	74, 86
AgsI	TTSAA	2 cut(s)	16, 229
AluBI	AGCT	1 cut(s)	151
AluI	AGCT	1 cut(s)	151
Alw21I	GWGCWC	1 cut(s)	153
AoxI	GGCC	3 cut(s)	123, 162, 216
AspS9I	GGNCC	2 cut(s)	162, 184
AsuHPI	GGTGA	1 cut(s)	55
AvaII	GGWCC	1 cut(s)	184
AxyI	CCTNAGG	1 cut(s)	158
BanII	GRGCYC	1 cut(s)	153
BauI	CACGAG	1 cut(s)	146
Bbv12I	GWGCWC	1 cut(s)	153
BisI	GCNGC	1 cut(s)	216
BlsI	GCNGC	1 cut(s)	217
Bme18I	GGWCC	1 cut(s)	184
BmgT120I	GGNCC	2 cut(s)	162, 184
BmiI	GGNNCC	1 cut(s)	185
BsaXI	ACNNNNNCTCC	2 cut(s)	158, 188
Bse21I	CCTNAGG	1 cut(s)	158
BseMII	CTCAG	1 cut(s)	172
BseRI	GAGGAG	1 cut(s)	61
BseX3I	CGGCCG	1 cut(s)	216
Bsh1236I	CGCG	1 cut(s)	26
Bsh1285I	CGRYCG	1 cut(s)	219
BshFI	GGCC	3 cut(s)	125, 164, 218
BsiEI	CGRYCG	1 cut(s)	219
BsiHKAI	GWGCWC	1 cut(s)	153
BsnI	GGCC	3 cut(s)	125, 164, 218
Bsp1286I	GDGCHC	1 cut(s)	153
BspACI	CCGC	2 cut(s)	26, 215
BspANI	GGCC	3 cut(s)	125, 164, 218
BspCNI	CTCAG	1 cut(s)	171
BspFNI	CGCG	1 cut(s)	26
BspLI	GGNNCC	1 cut(s)	185
BspQI	GCTCTTC	1 cut(s)	158
BssSI	CACGAG	1 cut(s)	146
Bst2BI	CACGAG	1 cut(s)	146
Bst6I	CTCTTC	1 cut(s)	158
BstDEI	CTNAG	4 cut(s)	81, 158, 199, 246
BstFNI	CGCG	1 cut(s)	26
BstMCI	CGRYCG	1 cut(s)	219
BstMWI	GCNNNNNNNGC	1 cut(s)	86
BstUI	CGCG	1 cut(s)	26
BstZI	CGGCCG	1 cut(s)	216
Bsu36I	CCTNAGG	1 cut(s)	158
BsuRI	GGCC	3 cut(s)	125, 164, 218
Cfr13I	GGNCC	2 cut(s)	162, 184
Csp6I	GTAC	2 cut(s)	73, 85
CviJI	RGCY	5 cut(s)	125, 140, 151, 164, 218
CviKI_1	RGCY	5 cut(s)	125, 140, 151, 164, 218
CviQI	GTAC	2 cut(s)	73, 85
DdeI	CTNAG	4 cut(s)	81, 158, 199, 246
EaeI	YGGCCR	1 cut(s)	216
EagI	CGGCCG	1 cut(s)	216
Eam1104I	CTCTTC	1 cut(s)	158
EarI	CTCTTC	1 cut(s)	158
Ecl136II	GAGCTC	1 cut(s)	151
EclXI	CGGCCG	1 cut(s)	216
Eco24I	GRGCYC	1 cut(s)	153
Eco47I	GGWCC	1 cut(s)	184
Eco52I	CGGCCG	1 cut(s)	216
Eco53kI	GAGCTC	1 cut(s)	151
Eco81I	CCTNAGG	1 cut(s)	158
EcoICRI	GAGCTC	1 cut(s)	151
EcoO109I	RGGNCCY	2 cut(s)	162, 184
EcoT38I	GRGCYC	1 cut(s)	153
FaiI	YATR	1 cut(s)	78
Fnu4HI	GCNGC	1 cut(s)	216
FriOI	GRGCYC	1 cut(s)	153
Fsp4HI	GCNGC	1 cut(s)	216
GluI	GCNGC	1 cut(s)	216
HaeIII	GGCC	3 cut(s)	125, 164, 218
HinfI	GANTC	1 cut(s)	62
HphI	GGTGA	1 cut(s)	55
Hpy166II	GTNNAC	1 cut(s)	205
Hpy8I	GTNNAC	1 cut(s)	205
Hpy99I	CGWCG	1 cut(s)	134
HpyF10VI	GCNNNNNNNGC	1 cut(s)	86
HpyF3I	CTNAG	4 cut(s)	81, 158, 199, 246
LguI	GCTCTTC	1 cut(s)	158
LmnI	GCTCC	1 cut(s)	245
LpnPI	CCDG	1 cut(s)	145
MboII	GAAGA	2 cut(s)	145, 241
MhlI	GDGCHC	1 cut(s)	153
MluCI	AATT	1 cut(s)	106
MlyI	GAGTC	1 cut(s)	56
MnlI	CCTC	7 cut(s)	39, 42, 109, 115, 152, 167, 197
MvnI	CGCG	1 cut(s)	26
MwoI	GCNNNNNNNGC	1 cut(s)	86
NlaIV	GGNNCC	1 cut(s)	185
NmeAIII	GCCGAG	1 cut(s)	244
PciSI	GCTCTTC	1 cut(s)	158
PcsI	WCGNNNNNNNCGW	1 cut(s)	126
PkrI	GCNGC	1 cut(s)	217
PleI	GAGTC	1 cut(s)	56
PpsI	GAGTC	1 cut(s)	56
PpuMI	RGGWCCY	1 cut(s)	184
Psp124BI	GAGCTC	1 cut(s)	153
Psp5II	RGGWCCY	1 cut(s)	184
PspN4I	GGNNCC	1 cut(s)	185
PspPI	GGNCC	2 cut(s)	162, 184
PspPPI	RGGWCCY	1 cut(s)	184
RsaI	GTAC	2 cut(s)	74, 86
RsaNI	GTAC	2 cut(s)	73, 85
SacI	GAGCTC	1 cut(s)	153
SapI	GCTCTTC	1 cut(s)	158
SatI	GCNGC	1 cut(s)	216
Sau96I	GGNCC	2 cut(s)	162, 184
SchI	GAGTC	1 cut(s)	56
SduI	GDGCHC	1 cut(s)	153
SetI	ASST	3 cut(s)	53, 120, 153
SinI	GGWCC	1 cut(s)	184
Sse9I	AATT	1 cut(s)	106
SsiI	CCGC	2 cut(s)	26, 215
SstI	GAGCTC	1 cut(s)	153
TaqI	TCGA	1 cut(s)	120
TasI	AATT	1 cut(s)	106
TauI	GCSGC	1 cut(s)	218
VpaK11BI	GGWCC	1 cut(s)	184

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.