Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0007868

Physical Location & Seq

Genomic Coordinates Forward (+)

74189080 .. 74189631

Gene Structure 552 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0554200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGATGCGCAGAAGCAGCAGCACAAGAGGTATGCTTTCTCGTCTTCCCTCTACTCGTCTTGCTGCTGTTCCCCTCATCAACAATTTCATGGCTTTGTTTCATTCGAGACAAACCCAGCTGGGAAATCGACCCTTGGTGCCCAAAATCACCAATCTCGAGAATGCCTTGAAAGTGTTTGACGAAATGCTTCACTCGCGTCCTCTGCCTTCTGTTATCCCTTTCACTCAGATCTTGGGTCAACTAGTCAAATTGAAACACTATTCTGCACCTATCCCTCTCTTTAAACAAATGCTTCTCCGGGGAATTGCTCCTAATCACTATACTCTGTCTATCATCATCAACTGCTATTGCCATTTGAATCAAATGGGTTTTAGTTTGTCTGTCTTAGGACAATTCTTCAAATTGGGTATTCAACCAAATGTTATTACCTTCTCTACTCTAATCAACGGCTTTGTTCTCCACAATCAAGTGCCTGAGGCTGCACGAATTTTCACCAAAATGCTGCAGGCAGGTCATTCTAAGCCCAATGTGGTTACAGAGAGAGGTAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Complex1_LYR

Protein Analysis

183

Amino Acids

20.59

Weight (kDa)

11.03

Isoelectric Point (pI)

39.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	69 - 118	3.3e-08	PPR repeat family
PPR_1	PF12854	136 - 167	1.8e-07	PPR repeat
PPR_2	PF13041	139 - 179	8e-07	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007868)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19508
fragaria_vesca	FvH4_2g04840 FvH4_2g04840 FvH4_2g04840 FvH4_2g04840 FvH4_2g04840 FvH4_2g04840 FvH4_2g04840
malus_domestica	MD00G1109400.v1.1 MD04G1005100.v1.1 MD05G1023600.v1.1
prunus_persica	Prupe.8G136900_v2.0.a1
pyrus_communis	pycom05g09110
rosa_chinensis	RchiOBHm_Chr6g0254661 RchiOBHm_Chr6g0254711
rosa_multiflora	Rmu_sc0000053.1_g000002 Rmu_sc0008789.1_g000005
rosa_roxburghii	Rroxscaffold_7G00210110 Rroxscaffold_7G00210660
rosa_rugosa	Rorug05G0554200
rosa_samantha	Rh6AG071300 Rh6CG062700 Rh6DG059900
rosa_wichuraiana	Rw6G006240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	8
Acc36I	ACCTGC	1 cut(s)	500
AccB1I	GGYRCC	1 cut(s)	136
AccII	CGCG	1 cut(s)	196
AcsI	RAATTY	1 cut(s)	486
AgsI	TTSAA	5 cut(s)	169, 253, 358, 400, 413
AhlI	ACTAGT	1 cut(s)	241
AluBI	AGCT	1 cut(s)	118
AluI	AGCT	1 cut(s)	118
Alw26I	GTCTC	1 cut(s)	100
Ama87I	CYCGRG	1 cut(s)	155
ApeKI	GCWGC	5 cut(s)	15, 18, 62, 479, 502
ApoI	RAATTY	1 cut(s)	486
Asp700I	GAANNNNTTC	1 cut(s)	186
AspLEI	GCGC	1 cut(s)	9
AsuC2I	CCSGG	1 cut(s)	299
AsuHPI	GGTGA	2 cut(s)	139, 484
AvaI	CYCGRG	1 cut(s)	155
AxyI	CCTNAGG	1 cut(s)	474
BaeGI	GKGCMC	1 cut(s)	141
BanI	GGYRCC	1 cut(s)	136
BbsI	GAAGAC	1 cut(s)	35
BbvI	GCAGC	5 cut(s)	27, 30, 49, 466, 489
BceAI	ACGGC	1 cut(s)	463
BcnI	CCSGG	1 cut(s)	299
BcoDI	GTCTC	1 cut(s)	100
BcuI	ACTAGT	1 cut(s)	241
BfaI	CTAG	1 cut(s)	242
BfmI	CTRYAG	1 cut(s)	503
BfuAI	ACCTGC	1 cut(s)	500
BglII	AGATCT	1 cut(s)	228
BisI	GCNGC	5 cut(s)	16, 19, 63, 480, 503
BlsI	GCNGC	5 cut(s)	17, 20, 64, 481, 504
Bme1390I	CCNGG	1 cut(s)	299
BmeT110I	CYCGRG	1 cut(s)	155
BmiI	GGNNCC	1 cut(s)	138
BmrFI	CCNGG	1 cut(s)	299
BpiI	GAAGAC	1 cut(s)	35
BpuMI	CCSGG	1 cut(s)	299
BsaJI	CCNNGG	2 cut(s)	132, 298
Bse21I	CCTNAGG	1 cut(s)	474
BseDI	CCNNGG	2 cut(s)	132, 298
BseMII	CTCAG	2 cut(s)	239, 465
BseSI	GKGCMC	1 cut(s)	141
BseXI	GCAGC	5 cut(s)	27, 30, 49, 466, 489
BseYI	CCCAGC	2 cut(s)	114, 118
BsgI	GTGCAG	2 cut(s)	249, 465
Bsh1236I	CGCG	1 cut(s)	196
BshNI	GGYRCC	1 cut(s)	136
BsiHKCI	CYCGRG	1 cut(s)	155
BsiSI	CCGG	1 cut(s)	298
BsmAI	GTCTC	1 cut(s)	100
BsmI	GAATGC	1 cut(s)	166
BsoBI	CYCGRG	1 cut(s)	155
Bsp1286I	GDGCHC	1 cut(s)	141
Bsp143I	GATC	1 cut(s)	228
BspCNI	CTCAG	2 cut(s)	238, 466
BspFNI	CGCG	1 cut(s)	196
BspLI	GGNNCC	1 cut(s)	138
BspMAI	CTGCAG	1 cut(s)	507
BspMI	ACCTGC	1 cut(s)	500
BspT107I	GGYRCC	1 cut(s)	136
BssECI	CCNNGG	2 cut(s)	132, 298
BssMI	GATC	1 cut(s)	228
BssT1I	CCWWGG	1 cut(s)	132
BstC8I	GCNNGC	1 cut(s)	507
BstDEI	CTNAG	4 cut(s)	225, 385, 474, 519
BstFNI	CGCG	1 cut(s)	196
BstHHI	GCGC	1 cut(s)	9
BstKTI	GATC	1 cut(s)	231
BstMAI	GTCTC	1 cut(s)	100
BstMBI	GATC	1 cut(s)	228
BstMWI	GCNNNNNNNGC	3 cut(s)	15, 193, 202
BstSCI	CCNGG	1 cut(s)	297
BstSFI	CTRYAG	1 cut(s)	503
BstSLI	GKGCMC	1 cut(s)	141
BstUI	CGCG	1 cut(s)	196
BstV1I	GCAGC	5 cut(s)	27, 30, 49, 466, 489
BstV2I	GAAGAC	1 cut(s)	35
BstX2I	RGATCY	1 cut(s)	228
BstYI	RGATCY	1 cut(s)	228
Bsu36I	CCTNAGG	1 cut(s)	474
BveI	ACCTGC	1 cut(s)	500
Cac8I	GCNNGC	1 cut(s)	507
CfoI	GCGC	1 cut(s)	9
CseI	GACGC	1 cut(s)	185
CviAII	CATG	1 cut(s)	88
CviJI	RGCY	5 cut(s)	92, 118, 450, 479, 523
CviKI_1	RGCY	5 cut(s)	92, 118, 450, 479, 523
DdeI	CTNAG	4 cut(s)	225, 385, 474, 519
DpnI	GATC	1 cut(s)	230
DpnII	GATC	1 cut(s)	228
DraI	TTTAAA	1 cut(s)	283
Eco130I	CCWWGG	1 cut(s)	132
Eco81I	CCTNAGG	1 cut(s)	474
Eco88I	CYCGRG	1 cut(s)	155
EcoT14I	CCWWGG	1 cut(s)	132
ErhI	CCWWGG	1 cut(s)	132
FaeI	CATG	1 cut(s)	91
FaiI	YATR	3 cut(s)	32, 89, 321
FatI	CATG	1 cut(s)	87
Fnu4HI	GCNGC	5 cut(s)	16, 19, 63, 480, 503
Fsp4HI	GCNGC	5 cut(s)	16, 19, 63, 480, 503
FspBI	CTAG	1 cut(s)	242
FspI	TGCGCA	1 cut(s)	8
GlaI	GCGC	1 cut(s)	8
GluI	GCNGC	5 cut(s)	16, 19, 63, 480, 503
GsaI	CCCAGC	2 cut(s)	118, 122
HapII	CCGG	1 cut(s)	298
HgaI	GACGC	1 cut(s)	185
HhaI	GCGC	1 cut(s)	9
Hin1II	CATG	1 cut(s)	91
Hin6I	GCGC	1 cut(s)	7
HinP1I	GCGC	1 cut(s)	7
HincII	GTYRAC	1 cut(s)	239
HindII	GTYRAC	1 cut(s)	239
HinfI	GANTC	1 cut(s)	358
HpaII	CCGG	1 cut(s)	298
HphI	GGTGA	2 cut(s)	139, 484
Hpy166II	GTNNAC	1 cut(s)	239
Hpy188I	TCNGA	1 cut(s)	228
Hpy188III	TCNNGA	3 cut(s)	105, 155, 157
Hpy8I	GTNNAC	1 cut(s)	239
HpyAV	CCTTC	2 cut(s)	216, 439
HpyCH4V	TGCA	3 cut(s)	266, 482, 505
HpyF10VI	GCNNNNNNNGC	3 cut(s)	15, 193, 202
HpyF3I	CTNAG	4 cut(s)	225, 385, 474, 519
Hsp92II	CATG	1 cut(s)	91
HspAI	GCGC	1 cut(s)	7
Kzo9I	GATC	1 cut(s)	228
LmnI	GCTCC	1 cut(s)	313
LpnPI	CCDG	6 cut(s)	104, 128, 311, 486, 491, 495
Lsp1109I	GCAGC	5 cut(s)	27, 30, 49, 466, 489
MaeI	CTAG	1 cut(s)	242
MaeIII	GTNAC	1 cut(s)	532
MalI	GATC	1 cut(s)	230
MboI	GATC	1 cut(s)	228
MboII	GAAGA	2 cut(s)	35, 388
MflI	RGATCY	1 cut(s)	228
MhlI	GDGCHC	1 cut(s)	141
MluCI	AATT	6 cut(s)	82, 248, 303, 392, 401, 486
MnlI	CCTC	7 cut(s)	20, 58, 83, 210, 285, 469, 536
MroXI	GAANNNNTTC	1 cut(s)	186
MseI	TTAA	1 cut(s)	282
MslI	CAYNNNNRTG	1 cut(s)	497
MspA1I	CMGCKG	1 cut(s)	118
MspI	CCGG	1 cut(s)	298
MspR9I	CCNGG	1 cut(s)	299
Mva1269I	GAATGC	1 cut(s)	166
MvnI	CGCG	1 cut(s)	196
MwoI	GCNNNNNNNGC	3 cut(s)	15, 193, 202
NciI	CCSGG	1 cut(s)	299
NdeII	GATC	1 cut(s)	228
NlaIII	CATG	1 cut(s)	91
NlaIV	GGNNCC	1 cut(s)	138
NsbI	TGCGCA	1 cut(s)	8
PaeR7I	CTCGAG	1 cut(s)	155
PctI	GAATGC	1 cut(s)	166
PdmI	GAANNNNTTC	1 cut(s)	186
PfeI	GAWTC	1 cut(s)	358
PkrI	GCNGC	5 cut(s)	17, 20, 64, 481, 504
PspFI	CCCAGC	2 cut(s)	114, 118
PspN4I	GGNNCC	1 cut(s)	138
PstI	CTGCAG	1 cut(s)	507
PsuI	RGATCY	1 cut(s)	228
PvuII	CAGCTG	1 cut(s)	118
RseI	CAYNNNNRTG	1 cut(s)	497
SaqAI	TTAA	1 cut(s)	282
SatI	GCNGC	5 cut(s)	16, 19, 63, 480, 503
Sau3AI	GATC	1 cut(s)	228
ScrFI	CCNGG	1 cut(s)	299
SduI	GDGCHC	1 cut(s)	141
SetI	ASST	6 cut(s)	31, 120, 271, 431, 514, 547
SfcI	CTRYAG	1 cut(s)	503
Sfr274I	CTCGAG	1 cut(s)	155
SlaI	CTCGAG	1 cut(s)	155
SmiMI	CAYNNNNRTG	1 cut(s)	497
SmlI	CTYRAG	1 cut(s)	155
SmoI	CTYRAG	1 cut(s)	155
SpeI	ACTAGT	1 cut(s)	241
Sse9I	AATT	6 cut(s)	82, 248, 303, 392, 401, 486
SspMI	CTAG	1 cut(s)	242
StyD4I	CCNGG	1 cut(s)	297
StyI	CCWWGG	1 cut(s)	132
TaqI	TCGA	3 cut(s)	104, 127, 156
TasI	AATT	6 cut(s)	82, 248, 303, 392, 401, 486
TfiI	GAWTC	1 cut(s)	358
Tru1I	TTAA	1 cut(s)	282
Tru9I	TTAA	1 cut(s)	282
TseI	GCWGC	5 cut(s)	15, 18, 62, 479, 502
TspDTI	ATGAA	2 cut(s)	76, 89
XapI	RAATTY	1 cut(s)	486
XhoI	CTCGAG	1 cut(s)	155
XmnI	GAANNNNTTC	1 cut(s)	186
XspI	CTAG	1 cut(s)	242

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.