AT3G19550

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0015087
Physical Location & Seq
Reverse (-)
6787127 .. 6788424
1298 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G19550.1

Sequence Viewer

Length: 333 bp
ATGGGAAGAACTGGGATCGCCAAAGCACCAAAGCTGCTGTTAAGGAGTTGGAAGCAATTTCAAGGGCGAGCAGGGATAAGCAGCAAAGCTGCAAAATCAAACCCGATGATCGTCGACTACTTTGAAGATATTTCCGACCATAATCTCAAATTTAGCGGCGAAGAGGAGAGCTGGGTCCCACACCCACGCACCGGAATATTCTTTCCGCCGGGACAAGAGTCGGTGATGGAAGATGTCCCTAATGGTGCTGCCTCCTTCGACATGACGTTTTGGCTTAGGAACGTTGACGGTGTTGATAAACCTGATCCTGATCTTCATCATCTTCCTTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_3

Protein Analysis

110

Amino Acids

12.36

Weight (kDa)

5.73

Isoelectric Point (pI)

33.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_3b PF22272 45 - 101 2.4e-06 Late embryogenesis abundant protein (LEA_3b subfamily)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015087)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G19550
fragaria_vesca FvH4_2g04480
malus_domestica MD05G1096000.v1.1 MD10G1102200.v1.1
prunus_persica Prupe.8G140400_v2.0.a1
pyrus_communis pycom05g09470
rosa_chinensis RchiOBHm_Chr6g0253971
rosa_laevigata RLG00000014952
rosa_multiflora Rmu_sc0001716.1_g000012
rosa_roxburghii Rroxscaffold_7G00211360
rosa_rugosa Rorug05G0548700
rosa_samantha Rh6AG065000 Rh6BG058100 Rh6CG058100 Rh6DG055000
rosa_wichuraiana Rw6G005730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 114
AciI CCGC 2 cut(s) 156, 206
AclI AACGTT 1 cut(s) 282
AclWI GGATC 2 cut(s) 23, 299
AcsI RAATTY 1 cut(s) 149
AfiI CCNNNNNNNGG 1 cut(s) 191
AgsI TTSAA 2 cut(s) 62, 125
AluBI AGCT 3 cut(s) 34, 89, 171
AluI AGCT 3 cut(s) 34, 89, 171
AlwI GGATC 2 cut(s) 23, 299
ApeKI GCWGC 4 cut(s) 34, 81, 89, 248
ApoI RAATTY 1 cut(s) 149
AspS9I GGNCC 1 cut(s) 175
AsuC2I CCSGG 1 cut(s) 210
AsuHPI GGTGA 1 cut(s) 235
AvaII GGWCC 1 cut(s) 175
BbvI GCAGC 4 cut(s) 21, 76, 93, 235
BccI CCATC 1 cut(s) 220
BcnI CCSGG 1 cut(s) 210
BisI GCNGC 5 cut(s) 35, 82, 90, 157, 249
BlsI GCNGC 5 cut(s) 36, 83, 91, 158, 250
Bme1390I CCNGG 1 cut(s) 210
Bme18I GGWCC 1 cut(s) 175
BmgT120I GGNCC 1 cut(s) 175
BmiI GGNNCC 2 cut(s) 176, 177
BmrFI CCNGG 1 cut(s) 210
BmrI ACTGGG 1 cut(s) 21
BmuI ACTGGG 1 cut(s) 21
BoxI GACNNNNGTC 1 cut(s) 217
Bpu10I CCTNAGC 1 cut(s) 275
BpuMI CCSGG 1 cut(s) 210
BsaBI GATNNNNATC 2 cut(s) 309, 315
BsaWI WCCGGW 1 cut(s) 191
Bsc4I CCNNNNNNNGG 1 cut(s) 191
Bse1I ACTGG 1 cut(s) 16
Bse8I GATNNNNATC 2 cut(s) 309, 315
BseJI GATNNNNATC 2 cut(s) 309, 315
BseLI CCNNNNNNNGG 1 cut(s) 191
BseNI ACTGG 1 cut(s) 16
BseRI GAGGAG 1 cut(s) 179
BseXI GCAGC 4 cut(s) 21, 76, 93, 235
BseYI CCCAGC 1 cut(s) 171
BsiSI CCGG 2 cut(s) 192, 209
BslFI GGGAC 3 cut(s) 161, 221, 225
BslI CCNNNNNNNGG 1 cut(s) 191
BsmFI GGGAC 3 cut(s) 161, 221, 225
Bsp143I GATC 4 cut(s) 15, 108, 304, 310
BspACI CCGC 2 cut(s) 156, 206
BspLI GGNNCC 2 cut(s) 176, 177
BspPI GGATC 2 cut(s) 23, 299
BsrI ACTGG 1 cut(s) 16
BssMI GATC 4 cut(s) 15, 108, 304, 310
Bst4CI ACNGT 1 cut(s) 290
Bst6I CTCTTC 1 cut(s) 156
BstC8I GCNNGC 1 cut(s) 69
BstDEI CTNAG 1 cut(s) 275
BstKTI GATC 4 cut(s) 18, 111, 307, 313
BstMBI GATC 4 cut(s) 15, 108, 304, 310
BstPAI GACNNNNGTC 1 cut(s) 217
BstSCI CCNGG 1 cut(s) 208
BstV1I GCAGC 4 cut(s) 21, 76, 93, 235
Cac8I GCNNGC 1 cut(s) 69
Cfr13I GGNCC 1 cut(s) 175
CviAII CATG 1 cut(s) 262
CviJI RGCY 4 cut(s) 34, 89, 171, 274
CviKI_1 RGCY 4 cut(s) 34, 89, 171, 274
DdeI CTNAG 1 cut(s) 275
DpnI GATC 4 cut(s) 17, 110, 306, 312
DpnII GATC 4 cut(s) 15, 108, 304, 310
Eam1104I CTCTTC 1 cut(s) 156
EarI CTCTTC 1 cut(s) 156
EciI GGCGGA 1 cut(s) 195
Eco47I GGWCC 1 cut(s) 175
EcoO109I RGGNCCY 1 cut(s) 175
FaeI CATG 1 cut(s) 265
FaiI YATR 2 cut(s) 141, 263
FaqI GGGAC 3 cut(s) 161, 221, 225
FatI CATG 1 cut(s) 261
FblI GTMKAC 1 cut(s) 114
Fnu4HI GCNGC 5 cut(s) 35, 82, 90, 157, 249
Fsp4HI GCNGC 5 cut(s) 35, 82, 90, 157, 249
GluI GCNGC 5 cut(s) 35, 82, 90, 157, 249
GsaI CCCAGC 1 cut(s) 175
HapII CCGG 2 cut(s) 192, 209
Hin1II CATG 1 cut(s) 265
HincII GTYRAC 2 cut(s) 115, 286
HindII GTYRAC 2 cut(s) 115, 286
HinfI GANTC 1 cut(s) 218
HpaII CCGG 2 cut(s) 192, 209
HphI GGTGA 1 cut(s) 235
Hpy166II GTNNAC 2 cut(s) 115, 286
Hpy188I TCNGA 1 cut(s) 136
Hpy188III TCNNGA 1 cut(s) 308
Hpy8I GTNNAC 2 cut(s) 115, 286
Hpy99I CGWCG 1 cut(s) 116
HpyAV CCTTC 1 cut(s) 265
HpyCH4III ACNGT 1 cut(s) 290
HpyCH4IV ACGT 2 cut(s) 266, 282
HpyCH4V TGCA 1 cut(s) 92
HpyF3I CTNAG 1 cut(s) 275
HpySE526I ACGT 2 cut(s) 266, 282
Hsp92II CATG 1 cut(s) 265
KflI GGGWCCC 1 cut(s) 175
Kzo9I GATC 4 cut(s) 15, 108, 304, 310
LpnPI CCDG 6 cut(s) 57, 157, 205, 222, 315, 321
Lsp1109I GCAGC 4 cut(s) 21, 76, 93, 235
MaeII ACGT 2 cut(s) 266, 282
MalI GATC 4 cut(s) 17, 110, 306, 312
MboI GATC 4 cut(s) 15, 108, 304, 310
MboII GAAGA 6 cut(s) 18, 137, 173, 242, 305, 314
MluCI AATT 2 cut(s) 56, 149
MlyI GAGTC 1 cut(s) 227
MmeI TCCRAC 2 cut(s) 29, 159
MnlI CCTC 2 cut(s) 157, 262
MseI TTAA 2 cut(s) 41, 331
MspI CCGG 2 cut(s) 192, 209
MspR9I CCNGG 1 cut(s) 210
NciI CCSGG 1 cut(s) 210
NdeII GATC 4 cut(s) 15, 108, 304, 310
NlaIII CATG 1 cut(s) 265
NlaIV GGNNCC 2 cut(s) 176, 177
PkrI GCNGC 5 cut(s) 36, 83, 91, 158, 250
PleI GAGTC 1 cut(s) 226
PpsI GAGTC 1 cut(s) 226
PpuMI RGGWCCY 1 cut(s) 175
PshAI GACNNNNGTC 1 cut(s) 217
Psp1406I AACGTT 1 cut(s) 282
Psp5II RGGWCCY 1 cut(s) 175
PspFI CCCAGC 1 cut(s) 171
PspN4I GGNNCC 2 cut(s) 176, 177
PspPI GGNCC 1 cut(s) 175
PspPPI RGGWCCY 1 cut(s) 175
SalI GTCGAC 1 cut(s) 113
SaqAI TTAA 2 cut(s) 41, 331
SatI GCNGC 5 cut(s) 35, 82, 90, 157, 249
Sau3AI GATC 4 cut(s) 15, 108, 304, 310
Sau96I GGNCC 1 cut(s) 175
SchI GAGTC 1 cut(s) 227
ScrFI CCNGG 1 cut(s) 210
SetI ASST 6 cut(s) 36, 91, 173, 269, 285, 304
SinI GGWCC 1 cut(s) 175
Sse9I AATT 2 cut(s) 56, 149
SsiI CCGC 2 cut(s) 156, 206
SspI AATATT 1 cut(s) 198
StyD4I CCNGG 1 cut(s) 208
TaaI ACNGT 1 cut(s) 290
TaiI ACGT 2 cut(s) 269, 285
TaqI TCGA 2 cut(s) 114, 258
TasI AATT 2 cut(s) 56, 149
TauI GCSGC 1 cut(s) 159
Tru1I TTAA 2 cut(s) 41, 331
Tru9I TTAA 2 cut(s) 41, 331
TseI GCWGC 4 cut(s) 34, 81, 89, 248
TspDTI ATGAA 1 cut(s) 305
VpaK11BI GGWCC 1 cut(s) 175
XapI RAATTY 1 cut(s) 149
XmiI GTMKAC 1 cut(s) 114
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.