Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0005406

Physical Location & Seq

Genomic Coordinates Forward (+)

73754944 .. 73760418

Gene Structure 5475 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0548700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2709 bp

ATGGGGAACCGAAAAGAACGACGTCGTCTTGCCGCCATGTCCAACTCTGGTCGCAGAGTCAAGCTCGATCTCTTCACCGAACCCCCTGGAGGAGATTTGGGTGGCTCTGCTGAACATGAGGGAGTAGGAGGAGAAGTACATTCGAAAGGCGAGTCTGGGTTACCCAATTCACCATCTTCTTCTTCAGGTCAGCAACCAGAAAATCCGCTGCTTTTACTTGGCCAGTATAGTGACGAGGAGTTGGATGATGGCTCAAATAAAACTCTTAGTGATGCTGCTGTAGAGAATTCCTCGCCTCAGAATAATGATGAGGTTAAGAGTGCGCTTAATGAATTGGGCCAGAATTTGGACATCAAAGGCGGCGATGAGCCTGCTTCTCATAAATTCAATCAAAAGGAAGTGGATACGAACTCTGATACACTGGATCGCGATCAGAGCATGGAAGACGGTGATAAAAGAGAAAATGGTGATCTGGCCCCCAGGGATTTTCGTACAGAAGTGGATTTGACAGAGAAAGTTTCTTTGCCTGAAAGTTCTAATGTGCAAGTCATTGGTGATGTCAGTTCAGGTTGGAAGATTGTGATGCATGAAGAAAGTAAAAGCTATTATTACTGGAATACTGAAACTGGGGAAACTTCATGGGAAGTGCCTGATGTTTTGGATCAAGCAACCAAGTTAACCTGTGACCAGCCTTCTGTTGATGAAAAAACAGAGAATGTACCTGTAGGTACACAAGAGCATTCTAATTCTGACGTGATTGAAGGGTCTTCCAATATGGTTCCTCAGGGCATATATGGGGATGGGTCCCAGATGAATGACTGGAATCTAGGATGCCATAATGGATCAGAGATTGATCCCTCTTCTCATCTTGTAAAATATACGGAGGCTTTGTTAGAGAGATTGAAGTTGCTACAACGGTCCAAGGATCAAGTGCAAGGCGTTGACTGGATCACAAAGTACATTTTGGAAGTTGAAATTAGACTGTTTGATTTGAAGTCACTTTTTTCCTATGGGTCATCTCTGCTTCCATTCTGGATGCATTCTGAAATACAGCTTAAGCGGCTTGAGAGTGGTATTAATGATGAAATGTCCAACATTGTTAAGTCTGGAGAATCAAATGAAGTTGAGGCATCTCATACATCATTCTCCCAGGGAGAAATAAATGTCCCGGAAAGCATGGGGTCTAAAACTGAAGTAGATCGAGCAGAAAATAAGCAACTTATGTCCTCTCTAAATGATTATCAGGGTTCTCTTAGTGCGGATACAGTCAGTGAAGATCAAGAAGTTAAAGACTCCATTGTAAAAAATGAGCATGTGTCTGCAATTGGCTCCCCAAGTAGACATATGGAGGTTGGTGCAAGTGAACAAGTCCATGGGATAGTAGTTTCTGATGAGTCAACTATTAAGAATGAGGTTTGTGCTGAGGAAGATGTTGACATGGATGTGGACATGGAAGTTGAAGATTCAAATCCAGCAGGAAATACAGCTATTTCTTATGCATTGCATGCCCAGGAGTTCACTGGAACAGAACAGCCAAATCAGTCTAGTCCACCTTCCCTATATACATCGCTAGTTTCAGAGGATACTTTCGCGGTTCGACCTCCTCCAGATGAGGAATGGATTCCTCCACCCCCACCTGATAATGAACAGGTTCCTCCGCCTCCACCTGATGAGCCACCACCTGAACCTCCATATCCTCCACTTCCGTCTTACTCTGAGACAGGACAACCTCCCTATGCAGAACAGTATAGTTACTCCTATCCAGTTCCCAGTTTTGAATATTATGGACATGCAGTTGCTGAAGCACCTGGTGGTAATTATTATGGACACACTGAAGGATGTCAAGTTGCTATACCCCATGTACCAGTTTACTATGGTGCAGTTCCTAGCACCTACACTGAAAATGCTCAGGTTGTGGCAAATCCTGTTGCGCCTGTCGCATATTATGGGCTTCAAGATGGAACAGTACCTGCCGCACCTGTAGTCAGTAGTGTAGACTCACAATTTCACAGTGGGGCTGCTCCTCTTAGCTCTGACAACCTTGCATCTGATCACCCTAGATCTATCAACTCCTTTGAAGGAGCAGGCAGCAGTGGTTCAACTGTGCAGGCTCCATCTACCTCAGCCACAGTCCAAGCATCTGCAACTATTATGGAAAAAGATACTATTGTTGCATTAACTAATTCGGTCTCTACTGCTGCACCTATTCCGGCTACATCAGTGGTTGCGAAGGTTCAATCAAAAGTTGTACGTACTAAAAAGCGGACAATCCCAGCTTCTTCTTCCTTGAGGTCTAATAAGAAAGTCTCCAGTTTGGTAGACAAGTGGAAAGCAGCAAAAGAGGAGTTGCTTGAAGATGAGGAGGAACCTGAGAATACATATGAGTTGCTAGAGAGGAAGCGACAAAGGGAAATAGAGGAATGGTATTCGCAACAAATTACGAGTGGAGAGGCCAAAGATAATGCTAATTTTCAACCTTTGGGCGGCAATTGGCGTGAGAAGGTGAAGCGAAGAAAGGCTCAGTTAGCCCGTGAAGCTGCACAGACTGCACCTGAAGCACCTAGTAATGGGAACCAGCAGCCCGATCTAACAGAACTTTCAAGGGATCTGCCCTCTGGATGGCAGGTTTACTGGGATGAATCCTCAAAGCAGGTTTATTACGGAAATACTGTAACCTCAGAAACTACTTGGACGAGACCAACAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_3

Protein Analysis

902

Amino Acids

98.57

Weight (kDa)

4.52

Isoelectric Point (pI)

53.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WW	PF00397	189 - 217	6.4e-08	WW domain
WW	PF00397	870 - 900	2.2e-09	WW domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0005406)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49850
fragaria_vesca	FvH4_2g04490 FvH4_2g04490
malus_domestica	MD05G1095900.v1.1 MD09G1148100.v1.1 MD10G1102100.v1.1
prunus_persica	Prupe.8G140300_v2.0.a1 Prupe.8G140300_v2.0.a1 Prupe.8G140300_v2.0.a1 Prupe.8G140300_v2.0.a1
pyrus_communis	pycom05g09460 pycom10g08780
rosa_chinensis	RchiOBHm_Chr6g0253981
rosa_laevigata	RLG00000014951
rosa_multiflora	Rmu_sc0001716.1_g000017
rosa_roxburghii	Rroxscaffold_7G00211330
rosa_rugosa	Rorug04G0080100 Rorug05G0548700
rosa_samantha	Rh2BG479300 Rh5DG329300 Rh6AG065200 Rh6AG082700 Rh6BG058200 Rh6CG058200 Rh6CG058300 Rh6DG055100 Rh6DG069100 Rh7CG154800
rosa_wichuraiana	Rw6G005740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	25
Acc36I	ACCTGC	3 cut(s)	1978, 2614, 2641
AccB7I	CCANNNNNTGG	1 cut(s)	346
AccI	GTMKAC	3 cut(s)	1339, 1995, 2319
AccII	CGCG	2 cut(s)	429, 1592
AclWI	GGATC	7 cut(s)	432, 669, 848, 850, 933, 956, 2613
AcoI	YGGCCR	1 cut(s)	220
AcsI	RAATTY	3 cut(s)	286, 343, 383
AcuI	CTGAAG	5 cut(s)	168, 1212, 1821, 1854, 2574
AcyI	GRCGYC	1 cut(s)	22
AdeI	CACNNNGTG	1 cut(s)	1811
AfaI	GTAC	9 cut(s)	138, 493, 720, 730, 959, 1863, 1968, 2250, 2254
AfiI	CCNNNNNNNGG	5 cut(s)	89, 346, 2483, 2567, 2619
AflII	CTTAAG	1 cut(s)	1055
AjiI	CACGTC	1 cut(s)	754
AjnI	CCWGG	5 cut(s)	85, 479, 1149, 1509, 1807
AluBI	AGCT	7 cut(s)	64, 603, 1054, 1487, 2031, 2276, 2537
AluI	AGCT	7 cut(s)	64, 603, 1054, 1487, 2031, 2276, 2537
Alw26I	GTCTC	4 cut(s)	1712, 2194, 2311, 2689
AlwI	GGATC	7 cut(s)	432, 669, 848, 850, 933, 956, 2613
AlwNI	CAGNNNCTG	2 cut(s)	1799, 1970
AoxI	GGCC	4 cut(s)	220, 337, 474, 2451
ApeKI	GCWGC	8 cut(s)	208, 275, 2018, 2088, 2198, 2333, 2537, 2578
ApoI	RAATTY	3 cut(s)	286, 343, 383
ArsI	GACNNNNNNTTYG	2 cut(s)	137, 169
AseI	ATTAAT	1 cut(s)	1077
Asp700I	GAANNNNTTC	2 cut(s)	1620, 1650
AspLEI	GCGC	2 cut(s)	325, 1933
AspS9I	GGNCC	4 cut(s)	337, 475, 804, 918
AsuC2I	CCSGG	1 cut(s)	1169
AsuHPI	GGTGA	7 cut(s)	67, 162, 461, 479, 566, 2045, 2515
AsuII	TTCGAA	1 cut(s)	143
AvaII	GGWCC	2 cut(s)	804, 918
AxyI	CCTNAGG	1 cut(s)	783
BaeI	ACNNNNGTAYC	2 cut(s)	2154, 2187
BalI	TGGCCA	1 cut(s)	222
BbsI	GAAGAC	2 cut(s)	450, 759
BbvCI	CCTCAGC	2 cut(s)	1422, 2122
BbvI	GCAGC	8 cut(s)	195, 262, 2005, 2100, 2185, 2345, 2524, 2590
BccI	CCATC	6 cut(s)	181, 242, 794, 1952, 2122, 2613
BcgI	CGANNNNNNTGC	2 cut(s)	353, 387
BciT130I	CCWGG	5 cut(s)	87, 481, 1151, 1511, 1809
BciVI	GTATCC	3 cut(s)	397, 1255, 1576
BclI	TGATCA	1 cut(s)	2050
BcnI	CCSGG	1 cut(s)	1169
BcoDI	GTCTC	4 cut(s)	1712, 2194, 2311, 2689
BfaI	CTAG	7 cut(s)	827, 1545, 1571, 1887, 2058, 2390, 2562
BfmI	CTRYAG	3 cut(s)	279, 723, 1980
BfrI	CTTAAG	1 cut(s)	1055
BfuAI	ACCTGC	3 cut(s)	1978, 2614, 2641
BfuI	GTATCC	3 cut(s)	397, 1255, 1576
BglII	AGATCT	1 cut(s)	2060
Bme1390I	CCNGG	6 cut(s)	87, 481, 1151, 1169, 1511, 1809
Bme18I	GGWCC	2 cut(s)	804, 918
BmgBI	CACGTC	1 cut(s)	754
BmgT120I	GGNCC	4 cut(s)	337, 475, 804, 918
BmrFI	CCNGG	6 cut(s)	87, 481, 1151, 1169, 1511, 1809
BmrI	ACTGGG	3 cut(s)	636, 1764, 2641
BmsI	GCATC	7 cut(s)	262, 573, 821, 1026, 1139, 2054, 2147
BmuI	ACTGGG	3 cut(s)	636, 1764, 2641
BpiI	GAAGAC	2 cut(s)	450, 759
BplI	GAGNNNNNCTC	4 cut(s)	48, 80, 275, 307
BpmI	CTGGAG	4 cut(s)	108, 1128, 1590, 2293
Bpu10I	CCTNAGC	3 cut(s)	1422, 1908, 2122
Bpu14I	TTCGAA	1 cut(s)	143
BpuEI	CTTGAG	2 cut(s)	1085, 2308
BpuMI	CCSGG	1 cut(s)	1169
BsaAI	YACGTR	1 cut(s)	2252
BsaBI	GATNNNNATC	2 cut(s)	429, 1467
BsaHI	GRCGYC	1 cut(s)	22
BsaI	GGTCTC	2 cut(s)	2194, 2689
BsaJI	CCNNGG	8 cut(s)	85, 479, 480, 921, 1149, 1150, 1372, 1509
BsaXI	ACNNNNNCTCC	4 cut(s)	120, 150, 875, 905
Bsc4I	CCNNNNNNNGG	5 cut(s)	89, 346, 2483, 2567, 2619
Bse21I	CCTNAGG	1 cut(s)	783
Bse3DI	GCAATG	1 cut(s)	1499
Bse8I	GATNNNNATC	2 cut(s)	429, 1467
BseBI	CCWGG	5 cut(s)	87, 481, 1151, 1511, 1809
BseDI	CCNNGG	8 cut(s)	85, 479, 480, 921, 1149, 1150, 1372, 1509
BseGI	GGATG	8 cut(s)	250, 805, 836, 1041, 1447, 1844, 2624, 2641
BseJI	GATNNNNATC	2 cut(s)	429, 1467
BseLI	CCNNNNNNNGG	5 cut(s)	89, 346, 2483, 2567, 2619
BseMI	GCAATG	1 cut(s)	1499
BseMII	CTCAG	9 cut(s)	311, 797, 1413, 1707, 1922, 2136, 2361, 2534, 2691
BseRI	GAGGAG	7 cut(s)	105, 144, 251, 1593, 2013, 2357, 2375
BseXI	GCAGC	8 cut(s)	195, 262, 2005, 2100, 2185, 2345, 2524, 2590
BseYI	CCCAGC	1 cut(s)	2272
BsgI	GTGCAG	5 cut(s)	1899, 2126, 2184, 2523, 2532
Bsh1236I	CGCG	2 cut(s)	429, 1592
BshFI	GGCC	4 cut(s)	222, 339, 476, 2453
BsiSI	CCGG	2 cut(s)	1169, 2210
BslFI	GGGAC	2 cut(s)	790, 1151
BslI	CCNNNNNNNGG	5 cut(s)	89, 346, 2483, 2567, 2619
BsmAI	GTCTC	4 cut(s)	1712, 2194, 2311, 2689
BsmFI	GGGAC	2 cut(s)	790, 1151
BsmI	GAATGC	2 cut(s)	739, 1039
BsnI	GGCC	4 cut(s)	222, 339, 476, 2453
Bso31I	GGTCTC	2 cut(s)	2194, 2689
Bsp119I	TTCGAA	1 cut(s)	143
Bsp19I	CCATGG	1 cut(s)	1372
Bsp68I	TCGCGA	1 cut(s)	429
BspANI	GGCC	4 cut(s)	222, 339, 476, 2453
BspCNI	CTCAG	9 cut(s)	310, 796, 1414, 1708, 1921, 2135, 2362, 2533, 2690
BspFNI	CGCG	2 cut(s)	429, 1592
BspMI	ACCTGC	3 cut(s)	1978, 2614, 2641
BspPI	GGATC	7 cut(s)	432, 669, 848, 850, 933, 956, 2613
BspT104I	TTCGAA	1 cut(s)	143
BspTI	CTTAAG	1 cut(s)	1055
BspTNI	GGTCTC	2 cut(s)	2194, 2689
BsrDI	GCAATG	1 cut(s)	1499
BssECI	CCNNGG	8 cut(s)	85, 479, 480, 921, 1149, 1150, 1372, 1509
BssNI	GRCGYC	1 cut(s)	22
BssT1I	CCWWGG	2 cut(s)	921, 1372
Bst2UI	CCWGG	5 cut(s)	87, 481, 1151, 1511, 1809
Bst6I	CTCTTC	2 cut(s)	77, 865
BstACI	GRCGYC	1 cut(s)	22
BstAFI	CTTAAG	1 cut(s)	1055
BstAPI	GCANNNNNTGC	2 cut(s)	1505, 2546
BstBAI	YACGTR	1 cut(s)	2252
BstBI	TTCGAA	1 cut(s)	143
BstC8I	GCNNGC	4 cut(s)	372, 1506, 2086, 2109
BstDSI	CCRYGG	1 cut(s)	1372
BstEII	GGTNACC	1 cut(s)	159
BstF5I	GGATG	8 cut(s)	250, 805, 836, 1041, 1447, 1844, 2624, 2641
BstFNI	CGCG	2 cut(s)	429, 1592
BstHHI	GCGC	2 cut(s)	325, 1933
BstMAI	GTCTC	4 cut(s)	1712, 2194, 2311, 2689
BstMWI	GCNNNNNNNGC	8 cut(s)	435, 1060, 1505, 1937, 2525, 2534, 2546, 2555
BstNI	CCWGG	5 cut(s)	87, 481, 1151, 1511, 1809
BstNSI	RCATGY	3 cut(s)	1316, 1508, 1793
BstPI	GGTNACC	1 cut(s)	159
BstSCI	CCNGG	6 cut(s)	85, 479, 1149, 1167, 1509, 1807
BstSFI	CTRYAG	3 cut(s)	279, 723, 1980
BstSNI	TACGTA	1 cut(s)	2252
BstUI	CGCG	2 cut(s)	429, 1592
BstV1I	GCAGC	8 cut(s)	195, 262, 2005, 2100, 2185, 2345, 2524, 2590
BstV2I	GAAGAC	2 cut(s)	450, 759
BstX2I	RGATCY	2 cut(s)	2060, 2605
BstYI	RGATCY	2 cut(s)	2060, 2605
Bsu36I	CCTNAGG	1 cut(s)	783
BsuI	GTATCC	3 cut(s)	397, 1255, 1576
BsuRI	GGCC	4 cut(s)	222, 339, 476, 2453
BtgI	CCRYGG	1 cut(s)	1372
BtgZI	GCGATG	2 cut(s)	378, 1551
BtrI	CACGTC	1 cut(s)	754
BtsCI	GGATG	8 cut(s)	250, 805, 836, 1041, 1447, 1844, 2624, 2641
BtsI	GCAGTG	1 cut(s)	2098
BtsIMutI	CAGTG	8 cut(s)	419, 1276, 1518, 1830, 1896, 2017, 2098, 2226
BtuMI	TCGCGA	1 cut(s)	429
BveI	ACCTGC	3 cut(s)	1978, 2614, 2641
Cac8I	GCNNGC	4 cut(s)	372, 1506, 2086, 2109
CaiI	CAGNNNCTG	2 cut(s)	1799, 1970
CfoI	GCGC	2 cut(s)	325, 1933
Cfr13I	GGNCC	4 cut(s)	337, 475, 804, 918
CsiI	ACCWGGT	1 cut(s)	1807
Csp6I	GTAC	9 cut(s)	137, 492, 719, 729, 958, 1862, 1967, 2249, 2253
CviQI	GTAC	9 cut(s)	137, 492, 719, 729, 958, 1862, 1967, 2249, 2253
DraIII	CACNNNGTG	1 cut(s)	1811
EaeI	YGGCCR	1 cut(s)	220
Eam1104I	CTCTTC	2 cut(s)	77, 865
EarI	CTCTTC	2 cut(s)	77, 865
EciI	GGCGGA	1 cut(s)	1647
Eco105I	TACGTA	1 cut(s)	2252
Eco130I	CCWWGG	2 cut(s)	921, 1372
Eco31I	GGTCTC	2 cut(s)	2194, 2689
Eco47I	GGWCC	2 cut(s)	804, 918
Eco57I	CTGAAG	5 cut(s)	168, 1212, 1821, 1854, 2574
Eco81I	CCTNAGG	1 cut(s)	783
Eco91I	GGTNACC	1 cut(s)	159
EcoO109I	RGGNCCY	1 cut(s)	804
EcoO65I	GGTNACC	1 cut(s)	159
EcoRI	GAATTC	1 cut(s)	286
EcoRII	CCWGG	5 cut(s)	85, 479, 1149, 1509, 1807
EcoT14I	CCWWGG	2 cut(s)	921, 1372
EcoT22I	ATGCAT	3 cut(s)	588, 1041, 1501
ErhI	CCWWGG	2 cut(s)	921, 1372
FaqI	GGGAC	2 cut(s)	790, 1151
FauNDI	CATATG	2 cut(s)	1344, 2380
FbaI	TGATCA	1 cut(s)	2050
FblI	GTMKAC	3 cut(s)	1339, 1995, 2319
FokI	GGATG	8 cut(s)	257, 812, 843, 1048, 1454, 1851, 2631, 2648
FspBI	CTAG	7 cut(s)	827, 1545, 1571, 1887, 2058, 2390, 2562
GlaI	GCGC	2 cut(s)	324, 1932
GsaI	CCCAGC	1 cut(s)	2276
GsuI	CTGGAG	4 cut(s)	108, 1128, 1590, 2293
HaeIII	GGCC	4 cut(s)	222, 339, 476, 2453
HapII	CCGG	2 cut(s)	1169, 2210
HhaI	GCGC	2 cut(s)	325, 1933
Hin1I	GRCGYC	1 cut(s)	22
Hin6I	GCGC	2 cut(s)	323, 1931
HinP1I	GCGC	2 cut(s)	323, 1931
HincII	GTYRAC	4 cut(s)	678, 943, 1398, 1435
HindII	GTYRAC	4 cut(s)	678, 943, 1398, 1435
HpaI	GTTAAC	1 cut(s)	678
HpaII	CCGG	2 cut(s)	1169, 2210
HphI	GGTGA	7 cut(s)	67, 162, 461, 479, 566, 2045, 2515
Hpy188III	TCNNGA	7 cut(s)	428, 1033, 1107, 1280, 1607, 1955, 2616
Hpy99I	CGWCG	2 cut(s)	24, 27
HpyAV	CCTTC	7 cut(s)	702, 755, 1563, 1829, 2072, 2224, 2494
HpyCH4IV	ACGT	3 cut(s)	22, 753, 2251
HpyF10VI	GCNNNNNNNGC	8 cut(s)	435, 1060, 1505, 1937, 2525, 2534, 2546, 2555
HpySE526I	ACGT	3 cut(s)	22, 753, 2251
Hsp92I	GRCGYC	1 cut(s)	22
HspAI	GCGC	2 cut(s)	323, 1931
KflI	GGGWCCC	1 cut(s)	804
Ksp22I	TGATCA	1 cut(s)	2050
KspAI	GTTAAC	1 cut(s)	678
LmnI	GCTCC	4 cut(s)	1334, 2026, 2081, 2116
Lsp1109I	GCAGC	8 cut(s)	195, 262, 2005, 2100, 2185, 2345, 2524, 2590
LweI	GCATC	7 cut(s)	262, 573, 821, 1026, 1139, 2054, 2147
MabI	ACCWGGT	1 cut(s)	1807
MaeI	CTAG	7 cut(s)	827, 1545, 1571, 1887, 2058, 2390, 2562
MaeII	ACGT	3 cut(s)	22, 753, 2251
MaeIII	GTNAC	6 cut(s)	159, 230, 683, 996, 1751, 2671
MfeI	CAATTG	2 cut(s)	1323, 2488
MflI	RGATCY	2 cut(s)	2060, 2605
MlsI	TGGCCA	1 cut(s)	222
MluNI	TGGCCA	1 cut(s)	222
MlyI	GAGTC	5 cut(s)	66, 161, 1286, 1403, 1991
MmeI	TCCRAC	4 cut(s)	66, 222, 551, 1116
Mox20I	TGGCCA	1 cut(s)	222
Mph1103I	ATGCAT	3 cut(s)	588, 1041, 1501
MroXI	GAANNNNTTC	2 cut(s)	1620, 1650
MscI	TGGCCA	1 cut(s)	222
MseI	TTAA	9 cut(s)	315, 327, 677, 1056, 1077, 1101, 1287, 1404, 2177
MslI	CAYNNNNRTG	1 cut(s)	1442
Msp20I	TGGCCA	1 cut(s)	222
MspA1I	CMGCKG	1 cut(s)	208
MspCI	CTTAAG	1 cut(s)	1055
MspI	CCGG	2 cut(s)	1169, 2210
MspR9I	CCNGG	6 cut(s)	87, 481, 1151, 1169, 1511, 1809
MunI	CAATTG	2 cut(s)	1323, 2488
Mva1269I	GAATGC	2 cut(s)	739, 1039
MvaI	CCWGG	5 cut(s)	87, 481, 1151, 1511, 1809
MvnI	CGCG	2 cut(s)	429, 1592
MwoI	GCNNNNNNNGC	8 cut(s)	435, 1060, 1505, 1937, 2525, 2534, 2546, 2555
NciI	CCSGG	1 cut(s)	1169
NcoI	CCATGG	1 cut(s)	1372
NdeI	CATATG	2 cut(s)	1344, 2380
NmuCI	GTSAC	3 cut(s)	230, 683, 996
NruI	TCGCGA	1 cut(s)	429
NsiI	ATGCAT	3 cut(s)	588, 1041, 1501
NspI	RCATGY	3 cut(s)	1316, 1508, 1793
NspV	TTCGAA	1 cut(s)	143
PaeI	GCATGC	1 cut(s)	1508
PasI	CCCWGGG	2 cut(s)	480, 1150
PctI	GAATGC	2 cut(s)	739, 1039
PdmI	GAANNNNTTC	2 cut(s)	1620, 1650
PfeI	GAWTC	5 cut(s)	823, 1112, 1463, 1621, 2639
PflFI	GACNNNGTC	1 cut(s)	24
PflMI	CCANNNNNTGG	1 cut(s)	346
PfoI	TCCNGGA	1 cut(s)	1167
PleI	GAGTC	5 cut(s)	65, 160, 1286, 1402, 1991
PpsI	GAGTC	5 cut(s)	65, 160, 1286, 1402, 1991
Ppu21I	YACGTR	1 cut(s)	2252
PpuMI	RGGWCCY	1 cut(s)	804
PshBI	ATTAAT	1 cut(s)	1077
Psp5II	RGGWCCY	1 cut(s)	804
Psp6I	CCWGG	5 cut(s)	85, 479, 1149, 1509, 1807
PspEI	GGTNACC	1 cut(s)	159
PspFI	CCCAGC	1 cut(s)	2272
PspGI	CCWGG	5 cut(s)	85, 479, 1149, 1509, 1807
PspPI	GGNCC	4 cut(s)	337, 475, 804, 918
PspPPI	RGGWCCY	1 cut(s)	804
PstNI	CAGNNNCTG	2 cut(s)	1799, 1970
PsuI	RGATCY	2 cut(s)	2060, 2605
PsyI	GACNNNGTC	1 cut(s)	24
RruI	TCGCGA	1 cut(s)	429
RsaI	GTAC	9 cut(s)	138, 493, 720, 730, 959, 1863, 1968, 2250, 2254
RsaNI	GTAC	9 cut(s)	137, 492, 719, 729, 958, 1862, 1967, 2249, 2253
RseI	CAYNNNNRTG	1 cut(s)	1442
SaqAI	TTAA	9 cut(s)	315, 327, 677, 1056, 1077, 1101, 1287, 1404, 2177
Sau96I	GGNCC	4 cut(s)	337, 475, 804, 918
SchI	GAGTC	5 cut(s)	66, 161, 1286, 1403, 1991
ScrFI	CCNGG	6 cut(s)	87, 481, 1151, 1169, 1511, 1809
SexAI	ACCWGGT	1 cut(s)	1807
SfaNI	GCATC	7 cut(s)	262, 573, 821, 1026, 1139, 2054, 2147
SfcI	CTRYAG	3 cut(s)	279, 723, 1980
SfuI	TTCGAA	1 cut(s)	143
SinI	GGWCC	2 cut(s)	804, 918
SmiMI	CAYNNNNRTG	1 cut(s)	1442
SmlI	CTYRAG	3 cut(s)	1055, 1064, 2287
SmoI	CTYRAG	3 cut(s)	1055, 1064, 2287
SnaBI	TACGTA	1 cut(s)	2252
SphI	GCATGC	1 cut(s)	1508
SspI	AATATT	1 cut(s)	1781
SspMI	CTAG	7 cut(s)	827, 1545, 1571, 1887, 2058, 2390, 2562
StyD4I	CCNGG	6 cut(s)	85, 479, 1149, 1167, 1509, 1807
StyI	CCWWGG	2 cut(s)	921, 1372
TaiI	ACGT	3 cut(s)	25, 756, 2254
TaqI	TCGA	4 cut(s)	66, 143, 1201, 1597
TaqII	GACCGA	1 cut(s)	2176
TatI	WGTACW	2 cut(s)	136, 957
TauI	GCSGC	5 cut(s)	35, 363, 1063, 1976, 2487
TfiI	GAWTC	5 cut(s)	823, 1112, 1463, 1621, 2639
Tru1I	TTAA	9 cut(s)	315, 327, 677, 1056, 1077, 1101, 1287, 1404, 2177
Tru9I	TTAA	9 cut(s)	315, 327, 677, 1056, 1077, 1101, 1287, 1404, 2177
TscAI	CASTG	8 cut(s)	426, 1276, 1525, 1837, 1903, 2017, 2098, 2226
TseFI	GTSAC	3 cut(s)	230, 683, 996
TseI	GCWGC	8 cut(s)	208, 275, 2018, 2088, 2198, 2333, 2537, 2578
Tsp45I	GTSAC	3 cut(s)	230, 683, 996
TspDTI	ATGAA	9 cut(s)	345, 603, 627, 717, 827, 1098, 1134, 1659, 2652
TspGWI	ACGGA	3 cut(s)	896, 1695, 2676
TspRI	CASTG	8 cut(s)	426, 1276, 1525, 1837, 1903, 2017, 2098, 2226
Tth111I	GACNNNGTC	1 cut(s)	24
Van91I	CCANNNNNTGG	1 cut(s)	346
Vha464I	CTTAAG	1 cut(s)	1055
VpaK11BI	GGWCC	2 cut(s)	804, 918
VspI	ATTAAT	1 cut(s)	1077
XapI	RAATTY	3 cut(s)	286, 343, 383
XceI	RCATGY	3 cut(s)	1316, 1508, 1793
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1517, 1614
XmiI	GTMKAC	3 cut(s)	1339, 1995, 2319
XmnI	GAANNNNTTC	2 cut(s)	1620, 1650
XspI	CTAG	7 cut(s)	827, 1545, 1571, 1887, 2058, 2390, 2562
ZraI	GACGTC	1 cut(s)	23
Zsp2I	ATGCAT	3 cut(s)	588, 1041, 1501

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.