Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0005406

Physical Location & Seq

Genomic Coordinates Reverse (-)

15869524 .. 15871473

Gene Structure 1950 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G140300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

ATGACGAGCGCATCGGAGCTTTTCTACAACCGGAGGTCTCGCTACAACAGCCGAACCGCCACCCACGATCTAGGGTTCGATTCTCTCCCTCCTCCTCTTCCCGATCGAAACCACAATCACAACCGTCGCCATCACAATCACCATCATGAATCCGACGGCTGCGATCCTCTCCTCCGCCGAACCCCTCGCCATCTCCGCCACCGCGCCTCCCTTCCGGAGCGAGCCGCAATTGGGGCTGAGCAAGGTGGGGCCCACTCGGGTTCGGGAAATGGGGTCGGTGCAAGCAGTCCCGGGTTGAGCGGGAACGAGAGGCTTCCTGGGTCTGTTTTGCTCGCTAGGGAAAGGCTTCTTGAGAGGCTGAGAGGGATGCCTCCTTCACAAACCAGGCATCGTAGAGCATTGAACGTTTACGGAAGTGGGCTAGTGCATGGTGATGAATCAAGTCCCCTTGATGTAAGGGATTGGGGTAATGAAATTTTGACTGGTCGGTCAGCCGGTGCCTATCCTTTCACTAACTTGGGCTCCCAAATTGAAAGGCAGCAACTCTTGCAAGAAGCAAACAAGAAGCCTCCGGGTCTCACTCAAGAGGTCCTTGATTGTCTGAGCCCTGAGCTTTTCAGCAGCTCAGAAAGGGATGTTGACAGGTTGGTTTTAAGGGCATCCCGAGATTGTAGTATCTGCCTGGAGAGCTTCCTAGATGGAGATGAGCTTATAAACTTGCCTTGTGCGCATAGATTCCATGCTGTCTGCTTGGGTCCCTGGGTTCGAATTCGAGGGGACTGCCCATATTGCCGAAGAGTTATAGTTGTAAATAGTCACACTGATAAAAGGACCACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001664 GO:0003674 GO:0003824 GO:0004842 GO:0005102 GO:0005109 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007267 GO:0008150 GO:0008152 GO:0008283 GO:0009056 GO:0009057 GO:0009966 GO:0009968 GO:0009987 GO:0010498 GO:0010646 GO:0010648 GO:0016020 GO:0016021 GO:0016055 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0022603 GO:0023051 GO:0023052 GO:0023057 GO:0030111 GO:0030163 GO:0030178 GO:0031224 GO:0031226 GO:0032446 GO:0032801 GO:0035567 GO:0036211 GO:0038018 GO:0043112 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044425 GO:0044459 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051603 GO:0051716 GO:0060070 GO:0060071 GO:0060828 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0071944 GO:0072089 GO:0090090 GO:0090175 GO:0140096 GO:0198738 GO:1901564 GO:1901565 GO:1901575 GO:1905114 GO:1905330 GO:2000026 GO:2000027 GO:2000050 GO:2000051

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

280

Amino Acids

31.1

Weight (kDa)

8.88

Isoelectric Point (pI)

62.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005406)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49850
fragaria_vesca	FvH4_2g04490 FvH4_2g04490
malus_domestica	MD05G1095900.v1.1 MD09G1148100.v1.1 MD10G1102100.v1.1
prunus_persica	Prupe.8G140300_v2.0.a1 Prupe.8G140300_v2.0.a1 Prupe.8G140300_v2.0.a1 Prupe.8G140300_v2.0.a1
pyrus_communis	pycom05g09460 pycom10g08780
rosa_chinensis	RchiOBHm_Chr6g0253981
rosa_laevigata	RLG00000014951
rosa_multiflora	Rmu_sc0001716.1_g000017
rosa_roxburghii	Rroxscaffold_7G00211330
rosa_rugosa	Rorug04G0080100 Rorug05G0548700
rosa_samantha	Rh2BG479300 Rh5DG329300 Rh6AG065200 Rh6AG082700 Rh6BG058200 Rh6CG058200 Rh6CG058300 Rh6DG055100 Rh6DG069100 Rh7CG154800
rosa_wichuraiana	Rw6G005740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	713
AasI	GACNNNNNNGTC	1 cut(s)	487
Acc16I	TGCGCA	1 cut(s)	729
AccB1I	GGYRCC	1 cut(s)	497
AccBSI	CCGCTC	1 cut(s)	300
AccII	CGCG	1 cut(s)	204
AccIII	TCCGGA	1 cut(s)	214
AciI	CCGC	6 cut(s)	57, 175, 196, 202, 225, 300
AclI	AACGTT	1 cut(s)	405
AclWI	GGATC	1 cut(s)	158
AcsI	RAATTY	2 cut(s)	474, 768
AfiI	CCNNNNNNNGG	1 cut(s)	231
AgsI	TTSAA	2 cut(s)	403, 533
AjnI	CCWGG	4 cut(s)	316, 383, 681, 758
AluBI	AGCT	5 cut(s)	19, 613, 624, 690, 709
AluI	AGCT	5 cut(s)	19, 613, 624, 690, 709
Alw26I	GTCTC	2 cut(s)	42, 581
AlwI	GGATC	1 cut(s)	158
Ama87I	CYCGRG	3 cut(s)	256, 290, 663
Aor13HI	TCCGGA	1 cut(s)	214
AoxI	GGCC	1 cut(s)	249
ApaI	GGGCCC	1 cut(s)	253
ApeKI	GCWGC	3 cut(s)	159, 538, 621
ApoI	RAATTY	2 cut(s)	474, 768
Asp700I	GAANNNNTTC	1 cut(s)	345
AspLEI	GCGC	3 cut(s)	11, 206, 730
AspS9I	GGNCC	5 cut(s)	249, 250, 589, 755, 831
AsuC2I	CCSGG	3 cut(s)	291, 292, 573
AsuHPI	GGTGA	2 cut(s)	131, 443
AsuII	TTCGAA	1 cut(s)	766
AvaI	CYCGRG	3 cut(s)	256, 290, 663
AvaII	GGWCC	3 cut(s)	589, 755, 831
BaeGI	GKGCMC	1 cut(s)	253
BanI	GGYRCC	1 cut(s)	497
BanII	GRGCYC	3 cut(s)	253, 524, 608
BbvI	GCAGC	3 cut(s)	146, 550, 633
BccI	CCATC	4 cut(s)	138, 150, 198, 692
BceAI	ACGGC	1 cut(s)	172
BcgI	CGANNNNNNTGC	2 cut(s)	762, 796
BciT130I	CCWGG	4 cut(s)	318, 385, 683, 760
BcnI	CCSGG	3 cut(s)	291, 292, 573
BcoDI	GTCTC	2 cut(s)	42, 581
BfaI	CTAG	4 cut(s)	71, 336, 422, 695
BisI	GCNGC	4 cut(s)	160, 225, 539, 622
BlpI	GCTNAGC	1 cut(s)	237
BlsI	GCNGC	4 cut(s)	161, 226, 540, 623
Bme1390I	CCNGG	7 cut(s)	291, 292, 318, 385, 573, 683, 760
Bme18I	GGWCC	3 cut(s)	589, 755, 831
BmeT110I	CYCGRG	3 cut(s)	256, 290, 663
BmgT120I	GGNCC	5 cut(s)	249, 250, 589, 755, 831
BmiI	GGNNCC	6 cut(s)	250, 251, 499, 523, 756, 757
BmrFI	CCNGG	7 cut(s)	291, 292, 318, 385, 573, 683, 760
BmsI	GCATC	4 cut(s)	20, 357, 397, 668
BpmI	CTGGAG	1 cut(s)	704
Bpu10I	CCTNAGC	1 cut(s)	609
Bpu1102I	GCTNAGC	1 cut(s)	237
Bpu14I	TTCGAA	1 cut(s)	766
BpuEI	CTTGAG	2 cut(s)	371, 567
BpuMI	CCSGG	3 cut(s)	291, 292, 573
BsaI	GGTCTC	2 cut(s)	42, 581
BsaJI	CCNNGG	4 cut(s)	290, 317, 758, 759
BsaWI	WCCGGW	2 cut(s)	30, 214
BsaXI	ACNNNNNCTCC	4 cut(s)	191, 221, 506, 536
Bsc4I	CCNNNNNNNGG	1 cut(s)	231
Bse118I	RCCGGY	1 cut(s)	494
Bse1I	ACTGG	1 cut(s)	487
BseAI	TCCGGA	1 cut(s)	214
BseBI	CCWGG	4 cut(s)	318, 385, 683, 760
BseDI	CCNNGG	4 cut(s)	290, 317, 758, 759
BseGI	GGATG	3 cut(s)	372, 640, 659
BseLI	CCNNNNNNNGG	1 cut(s)	231
BseMII	CTCAG	5 cut(s)	228, 350, 593, 600, 639
BseNI	ACTGG	1 cut(s)	487
BseRI	GAGGAG	3 cut(s)	81, 84, 161
BseSI	GKGCMC	1 cut(s)	253
BseXI	GCAGC	3 cut(s)	146, 550, 633
Bsh1236I	CGCG	1 cut(s)	204
Bsh1285I	CGRYCG	1 cut(s)	106
BshFI	GGCC	1 cut(s)	251
BshNI	GGYRCC	1 cut(s)	497
BsiEI	CGRYCG	1 cut(s)	106
BsiHKCI	CYCGRG	3 cut(s)	256, 290, 663
BsiSI	CCGG	5 cut(s)	31, 215, 291, 495, 572
BslFI	GGGAC	4 cut(s)	273, 429, 741, 791
BslI	CCNNNNNNNGG	1 cut(s)	231
BsmAI	GTCTC	2 cut(s)	42, 581
BsmFI	GGGAC	4 cut(s)	273, 429, 741, 791
BsnI	GGCC	1 cut(s)	251
Bso31I	GGTCTC	2 cut(s)	42, 581
BsoBI	CYCGRG	3 cut(s)	256, 290, 663
Bsp119I	TTCGAA	1 cut(s)	766
Bsp120I	GGGCCC	1 cut(s)	249
Bsp1286I	GDGCHC	3 cut(s)	253, 524, 608
Bsp13I	TCCGGA	1 cut(s)	214
Bsp143I	GATC	3 cut(s)	67, 103, 163
Bsp1720I	GCTNAGC	1 cut(s)	237
BspACI	CCGC	6 cut(s)	57, 175, 196, 202, 225, 300
BspANI	GGCC	1 cut(s)	251
BspCNI	CTCAG	5 cut(s)	229, 351, 594, 601, 638
BspEI	TCCGGA	1 cut(s)	214
BspFNI	CGCG	1 cut(s)	204
BspHI	TCATGA	1 cut(s)	145
BspLI	GGNNCC	6 cut(s)	250, 251, 499, 523, 756, 757
BspPI	GGATC	1 cut(s)	158
BspT104I	TTCGAA	1 cut(s)	766
BspT107I	GGYRCC	1 cut(s)	497
BspTNI	GGTCTC	2 cut(s)	42, 581
BsrBI	CCGCTC	1 cut(s)	300
BsrFI	RCCGGY	1 cut(s)	494
BsrI	ACTGG	1 cut(s)	487
BssAI	RCCGGY	1 cut(s)	494
BssECI	CCNNGG	4 cut(s)	290, 317, 758, 759
BssMI	GATC	3 cut(s)	67, 103, 163
Bst2UI	CCWGG	4 cut(s)	318, 385, 683, 760
Bst4CI	ACNGT	1 cut(s)	125
Bst6I	CTCTTC	2 cut(s)	102, 790
BstAPI	GCANNNNNTGC	1 cut(s)	547
BstBI	TTCGAA	1 cut(s)	766
BstC8I	GCNNGC	3 cut(s)	222, 283, 333
BstDEI	CTNAG	5 cut(s)	237, 359, 602, 609, 625
BstF5I	GGATG	3 cut(s)	372, 640, 659
BstFNI	CGCG	1 cut(s)	204
BstHHI	GCGC	3 cut(s)	11, 206, 730
BstKTI	GATC	3 cut(s)	70, 106, 166
BstMAI	GTCTC	2 cut(s)	42, 581
BstMBI	GATC	3 cut(s)	67, 103, 163
BstMCI	CGRYCG	1 cut(s)	106
BstMWI	GCNNNNNNNGC	7 cut(s)	48, 195, 233, 547, 687, 727, 789
BstNI	CCWGG	4 cut(s)	318, 385, 683, 760
BstSCI	CCNGG	7 cut(s)	289, 290, 316, 383, 571, 681, 758
BstSLI	GKGCMC	1 cut(s)	253
BstUI	CGCG	1 cut(s)	204
BstV1I	GCAGC	3 cut(s)	146, 550, 633
BsuRI	GGCC	1 cut(s)	251
BtsCI	GGATG	3 cut(s)	372, 640, 659
BtsIMutI	CAGTG	1 cut(s)	819
Cac8I	GCNNGC	3 cut(s)	222, 283, 333
CciI	TCATGA	1 cut(s)	145
CfoI	GCGC	3 cut(s)	11, 206, 730
Cfr10I	RCCGGY	1 cut(s)	494
Cfr13I	GGNCC	5 cut(s)	249, 250, 589, 755, 831
Cfr9I	CCCGGG	1 cut(s)	290
CviAII	CATG	3 cut(s)	146, 428, 740
DdeI	CTNAG	5 cut(s)	237, 359, 602, 609, 625
DpnI	GATC	3 cut(s)	69, 105, 165
DpnII	GATC	3 cut(s)	67, 103, 163
DrdI	GACNNNNNNGTC	1 cut(s)	487
DseDI	GACNNNNNNGTC	1 cut(s)	487
Eam1104I	CTCTTC	2 cut(s)	102, 790
EarI	CTCTTC	2 cut(s)	102, 790
EciI	GGCGGA	2 cut(s)	164, 185
Eco24I	GRGCYC	3 cut(s)	253, 524, 608
Eco31I	GGTCTC	2 cut(s)	42, 581
Eco47I	GGWCC	3 cut(s)	589, 755, 831
Eco88I	CYCGRG	3 cut(s)	256, 290, 663
EcoO109I	RGGNCCY	3 cut(s)	249, 589, 755
EcoRI	GAATTC	1 cut(s)	768
EcoRII	CCWGG	4 cut(s)	316, 383, 681, 758
EcoT38I	GRGCYC	3 cut(s)	253, 524, 608
FaeI	CATG	3 cut(s)	149, 431, 743
FaiI	YATR	8 cut(s)	147, 429, 713, 732, 741, 787, 803, 838
FalI	AAGNNNNNCTT	2 cut(s)	576, 608
FaqI	GGGAC	4 cut(s)	273, 429, 741, 791
FatI	CATG	3 cut(s)	145, 427, 739
FauI	CCCGC	1 cut(s)	293
Fnu4HI	GCNGC	4 cut(s)	160, 225, 539, 622
FokI	GGATG	3 cut(s)	379, 646, 647
FriOI	GRGCYC	3 cut(s)	253, 524, 608
Fsp4HI	GCNGC	4 cut(s)	160, 225, 539, 622
FspAI	RTGCGCAY	1 cut(s)	729
FspBI	CTAG	4 cut(s)	71, 336, 422, 695
FspI	TGCGCA	1 cut(s)	729
GlaI	GCGC	3 cut(s)	10, 205, 729
GluI	GCNGC	4 cut(s)	160, 225, 539, 622
GsuI	CTGGAG	1 cut(s)	704
HaeIII	GGCC	1 cut(s)	251
HapII	CCGG	5 cut(s)	31, 215, 291, 495, 572
HhaI	GCGC	3 cut(s)	11, 206, 730
Hin1II	CATG	3 cut(s)	149, 431, 743
Hin6I	GCGC	3 cut(s)	9, 204, 728
HinP1I	GCGC	3 cut(s)	9, 204, 728
HincII	GTYRAC	1 cut(s)	640
HindII	GTYRAC	1 cut(s)	640
HinfI	GANTC	4 cut(s)	80, 149, 437, 735
HpaII	CCGG	5 cut(s)	31, 215, 291, 495, 572
HphI	GGTGA	2 cut(s)	131, 443
Hpy166II	GTNNAC	2 cut(s)	409, 640
Hpy188I	TCNGA	4 cut(s)	16, 154, 603, 628
Hpy188III	TCNNGA	7 cut(s)	101, 146, 215, 264, 350, 584, 663
Hpy8I	GTNNAC	2 cut(s)	409, 640
Hpy99I	CGWCG	2 cut(s)	129, 158
HpyAV	CCTTC	2 cut(s)	221, 384
HpyCH4III	ACNGT	1 cut(s)	125
HpyCH4IV	ACGT	1 cut(s)	405
HpyCH4V	TGCA	3 cut(s)	281, 427, 550
HpyF10VI	GCNNNNNNNGC	7 cut(s)	48, 195, 233, 547, 687, 727, 789
HpyF3I	CTNAG	5 cut(s)	237, 359, 602, 609, 625
HpySE526I	ACGT	1 cut(s)	405
Hsp92II	CATG	3 cut(s)	149, 431, 743
HspAI	GCGC	3 cut(s)	9, 204, 728
KflI	GGGWCCC	1 cut(s)	755
Kpn2I	TCCGGA	1 cut(s)	214
Kzo9I	GATC	3 cut(s)	67, 103, 163
LmnI	GCTCC	3 cut(s)	16, 217, 527
Lsp1109I	GCAGC	3 cut(s)	146, 550, 633
LweI	GCATC	4 cut(s)	20, 357, 397, 668
MaeI	CTAG	4 cut(s)	71, 336, 422, 695
MaeII	ACGT	1 cut(s)	405
MaeIII	GTNAC	1 cut(s)	815
MalI	GATC	3 cut(s)	69, 105, 165
MbiI	CCGCTC	1 cut(s)	300
MboI	GATC	3 cut(s)	67, 103, 163
MboII	GAAGA	2 cut(s)	89, 807
MfeI	CAATTG	1 cut(s)	228
MhlI	GDGCHC	3 cut(s)	253, 524, 608
MluCI	AATT	4 cut(s)	228, 474, 528, 768
MmeI	TCCRAC	1 cut(s)	177
MroI	TCCGGA	1 cut(s)	214
MroXI	GAANNNNTTC	1 cut(s)	345
MseI	TTAA	1 cut(s)	653
MslI	CAYNNNNRTG	2 cut(s)	144, 432
MspI	CCGG	5 cut(s)	31, 215, 291, 495, 572
MspR9I	CCNGG	7 cut(s)	291, 292, 318, 385, 573, 683, 760
MunI	CAATTG	1 cut(s)	228
MvaI	CCWGG	4 cut(s)	318, 385, 683, 760
MvnI	CGCG	1 cut(s)	204
MwoI	GCNNNNNNNGC	7 cut(s)	48, 195, 233, 547, 687, 727, 789
NciI	CCSGG	3 cut(s)	291, 292, 573
NdeII	GATC	3 cut(s)	67, 103, 163
NlaIII	CATG	3 cut(s)	149, 431, 743
NlaIV	GGNNCC	6 cut(s)	250, 251, 499, 523, 756, 757
NmuCI	GTSAC	1 cut(s)	815
NsbI	TGCGCA	1 cut(s)	729
NspV	TTCGAA	1 cut(s)	766
PagI	TCATGA	1 cut(s)	145
PasI	CCCWGGG	1 cut(s)	759
PdmI	GAANNNNTTC	1 cut(s)	345
PfeI	GAWTC	4 cut(s)	80, 149, 437, 735
PkrI	GCNGC	4 cut(s)	161, 226, 540, 623
Ple19I	CGATCG	1 cut(s)	106
PpuMI	RGGWCCY	2 cut(s)	589, 755
PsiI	TTATAA	1 cut(s)	713
Psp1406I	AACGTT	1 cut(s)	405
Psp5II	RGGWCCY	2 cut(s)	589, 755
Psp6I	CCWGG	4 cut(s)	316, 383, 681, 758
PspGI	CCWGG	4 cut(s)	316, 383, 681, 758
PspN4I	GGNNCC	6 cut(s)	250, 251, 499, 523, 756, 757
PspOMI	GGGCCC	1 cut(s)	249
PspPI	GGNCC	5 cut(s)	249, 250, 589, 755, 831
PspPPI	RGGWCCY	2 cut(s)	589, 755
PvuI	CGATCG	1 cut(s)	106
RseI	CAYNNNNRTG	2 cut(s)	144, 432
SaqAI	TTAA	1 cut(s)	653
SatI	GCNGC	4 cut(s)	160, 225, 539, 622
Sau3AI	GATC	3 cut(s)	67, 103, 163
Sau96I	GGNCC	5 cut(s)	249, 250, 589, 755, 831
ScrFI	CCNGG	7 cut(s)	291, 292, 318, 385, 573, 683, 760
SduI	GDGCHC	3 cut(s)	253, 524, 608
SfaNI	GCATC	4 cut(s)	20, 357, 397, 668
SfuI	TTCGAA	1 cut(s)	766
SinI	GGWCC	3 cut(s)	589, 755, 831
SmaI	CCCGGG	1 cut(s)	292
SmiMI	CAYNNNNRTG	2 cut(s)	144, 432
SmlI	CTYRAG	2 cut(s)	350, 582
SmoI	CTYRAG	2 cut(s)	350, 582
Sse9I	AATT	4 cut(s)	228, 474, 528, 768
SsiI	CCGC	6 cut(s)	57, 175, 196, 202, 225, 300
SspMI	CTAG	4 cut(s)	71, 336, 422, 695
StyD4I	CCNGG	7 cut(s)	289, 290, 316, 383, 571, 681, 758
TaaI	ACNGT	1 cut(s)	125
TaiI	ACGT	1 cut(s)	408
TaqI	TCGA	4 cut(s)	78, 106, 766, 772
TaqII	GACCGA	1 cut(s)	477
TasI	AATT	4 cut(s)	228, 474, 528, 768
TauI	GCSGC	1 cut(s)	227
TfiI	GAWTC	4 cut(s)	80, 149, 437, 735
Tru1I	TTAA	1 cut(s)	653
Tru9I	TTAA	1 cut(s)	653
TscAI	CASTG	1 cut(s)	826
TseFI	GTSAC	1 cut(s)	815
TseI	GCWGC	3 cut(s)	159, 538, 621
Tsp45I	GTSAC	1 cut(s)	815
TspDTI	ATGAA	3 cut(s)	162, 450, 486
TspGWI	ACGGA	1 cut(s)	426
TspMI	CCCGGG	1 cut(s)	290
TspRI	CASTG	1 cut(s)	826
VpaK11BI	GGWCC	3 cut(s)	589, 755, 831
XapI	RAATTY	2 cut(s)	474, 768
XmaI	CCCGGG	1 cut(s)	290
XmnI	GAANNNNTTC	1 cut(s)	345
XspI	CTAG	4 cut(s)	71, 336, 422, 695

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.