Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0005406

Physical Location & Seq

Genomic Coordinates Forward (+)

5833436 .. 5835535

Gene Structure 2100 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG058200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

ATGACGAGCGCGTCGGAGCTTTTCTACAACCGCAGGTCTCGCTACAACAACAGCCGAGCCACCCACCAAGATCTCGGCTTCGACTCCCTCTGTCCTCCCGATCGGATTTACAATCGCCGCCACCACAACCATGAATCCGACGGCTGTGATCTCCTCCGCCGCACCCCCTCGCGCCACATCCGCCGTGTCTCCCTCACGGAGCGTGGAGCGGGAATTGGGCCGGAGCAGGGGGGTCAATCGGGTACGGGTAATCGGGTTGGACCCAGAGTGAGTGGGAATGAGAGGCTGCCTGGTGCTGTTGTGCTGGCTAGGGAGAGGCTACTTGAGAGGTTGAGAGGAATGCCTCCTTCGGAAACCAGGCGACACAGGGCATTGCATATATACAGGAGCGGTCTACTTGGTGATGATTTGGCTCCTGTTGATGAAAGGGATTGGAGTACTGAAACCTGGCCAGGCCGGTCCGCCAGTGTTTCCCAATCCAGTGACTTGAGTTCACAAATTGAAAGGATGCATCTCTTGCAAGAAGCAAACAAGAAGCCCCCAGGTCTTACTCAAGAGGTCCTTGATTGCTTGAGTGTTGAGCTTTTCAGCAACACAGAATTGGGTGTTGACGGGTTGGTATCAAAAGCATCACGAGATTGTAGTATATGCCTGGAGAGTTTCATGGATGGGGAAGAGCTTATATGCTTGCCCTGTGCACATAGATTCCACACTACCTGCTTGGGACCCTGGGTTCGAATACGAGGAGACTGCCCGTATTGCCGGAGAGCTATAATTGTAGATAGTGACATGTCCAAAAGGACTATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001664 GO:0003674 GO:0003824 GO:0004842 GO:0005102 GO:0005109 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007267 GO:0008150 GO:0008152 GO:0008283 GO:0009056 GO:0009057 GO:0009966 GO:0009968 GO:0009987 GO:0010498 GO:0010646 GO:0010648 GO:0016020 GO:0016021 GO:0016055 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0022603 GO:0023051 GO:0023052 GO:0023057 GO:0030111 GO:0030163 GO:0030178 GO:0031224 GO:0031226 GO:0032446 GO:0032801 GO:0035567 GO:0036211 GO:0038018 GO:0043112 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044425 GO:0044459 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051603 GO:0051716 GO:0060070 GO:0060071 GO:0060828 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0071944 GO:0072089 GO:0090090 GO:0090175 GO:0140096 GO:0198738 GO:1901564 GO:1901565 GO:1901575 GO:1905114 GO:1905330 GO:2000026 GO:2000027 GO:2000050 GO:2000051

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

269

Amino Acids

30.25

Weight (kDa)

8.36

Isoelectric Point (pI)

69.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	213 - 255	1.7e-13	Ring finger domain
zf-RING_11	PF17123	213 - 241	5.6e-11	RING-like zinc finger
zf-C3HC4_2	PF13923	214 - 254	7.1e-06	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005406)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49850
fragaria_vesca	FvH4_2g04490 FvH4_2g04490
malus_domestica	MD05G1095900.v1.1 MD09G1148100.v1.1 MD10G1102100.v1.1
prunus_persica	Prupe.8G140300_v2.0.a1 Prupe.8G140300_v2.0.a1 Prupe.8G140300_v2.0.a1 Prupe.8G140300_v2.0.a1
pyrus_communis	pycom05g09460 pycom10g08780
rosa_chinensis	RchiOBHm_Chr6g0253981
rosa_laevigata	RLG00000014951
rosa_multiflora	Rmu_sc0001716.1_g000017
rosa_roxburghii	Rroxscaffold_7G00211330
rosa_rugosa	Rorug04G0080100 Rorug05G0548700
rosa_samantha	Rh2BG479300 Rh5DG329300 Rh6AG065200 Rh6AG082700 Rh6BG058200 Rh6CG058200 Rh6CG058300 Rh6DG055100 Rh6DG069100 Rh7CG154800
rosa_wichuraiana	Rw6G005740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	10
Acc36I	ACCTGC	2 cut(s)	24, 725
AccBSI	CCGCTC	2 cut(s)	209, 390
AccI	GTMKAC	1 cut(s)	394
AccII	CGCG	2 cut(s)	11, 172
AciI	CCGC	8 cut(s)	31, 118, 157, 160, 181, 209, 390, 462
AcoI	YGGCCR	1 cut(s)	449
AfaI	GTAC	2 cut(s)	244, 439
AfiI	CCNNNNNNNGG	1 cut(s)	227
AflIII	ACRYGT	1 cut(s)	789
AgsI	TTSAA	1 cut(s)	503
AjnI	CCWGG	7 cut(s)	289, 356, 446, 451, 541, 651, 728
AloI	GAACNNNNNNTCC	2 cut(s)	717, 749
AluBI	AGCT	4 cut(s)	19, 583, 679, 770
AluI	AGCT	4 cut(s)	19, 583, 679, 770
Alw21I	GWGCWC	1 cut(s)	700
Alw26I	GTCTC	3 cut(s)	42, 193, 741
Alw44I	GTGCAC	1 cut(s)	696
AoxI	GGCC	3 cut(s)	218, 449, 454
ApaLI	GTGCAC	1 cut(s)	696
ApeKI	GCWGC	1 cut(s)	286
ArsI	GACNNNNNNTTYG	2 cut(s)	717, 749
AspLEI	GCGC	2 cut(s)	11, 174
AspS9I	GGNCC	5 cut(s)	218, 260, 459, 559, 725
AsuHPI	GGTGA	1 cut(s)	413
AsuII	TTCGAA	1 cut(s)	736
AvaII	GGWCC	4 cut(s)	260, 459, 559, 725
BaeGI	GKGCMC	1 cut(s)	700
BalI	TGGCCA	1 cut(s)	451
BauI	CACGAG	1 cut(s)	633
Bbv12I	GWGCWC	1 cut(s)	700
BbvI	GCAGC	1 cut(s)	273
BccI	CCATC	1 cut(s)	662
BceAI	ACGGC	2 cut(s)	157, 168
BcgI	CGANNNNNNTGC	2 cut(s)	732, 766
BciT130I	CCWGG	7 cut(s)	291, 358, 448, 453, 543, 653, 730
BcoDI	GTCTC	3 cut(s)	42, 193, 741
BfaI	CTAG	1 cut(s)	309
BfuAI	ACCTGC	2 cut(s)	24, 725
BglII	AGATCT	1 cut(s)	70
BisI	GCNGC	3 cut(s)	118, 160, 287
BlsI	GCNGC	3 cut(s)	119, 161, 288
BmcAI	AGTACT	1 cut(s)	439
Bme1390I	CCNGG	7 cut(s)	291, 358, 448, 453, 543, 653, 730
Bme18I	GGWCC	4 cut(s)	260, 459, 559, 725
BmgT120I	GGNCC	5 cut(s)	218, 260, 459, 559, 725
BmiI	GGNNCC	4 cut(s)	262, 414, 726, 727
BmrFI	CCNGG	7 cut(s)	291, 358, 448, 453, 543, 653, 730
BmsI	GCATC	3 cut(s)	498, 520, 638
BpmI	CTGGAG	1 cut(s)	674
Bpu14I	TTCGAA	1 cut(s)	736
BpuEI	CTTGAG	4 cut(s)	344, 508, 537, 592
BsaI	GGTCTC	1 cut(s)	42
BsaJI	CCNNGG	3 cut(s)	541, 728, 729
Bsc4I	CCNNNNNNNGG	1 cut(s)	227
Bse118I	RCCGGY	1 cut(s)	456
Bse1I	ACTGG	2 cut(s)	465, 480
Bse3DI	GCAATG	1 cut(s)	371
BseBI	CCWGG	7 cut(s)	291, 358, 448, 453, 543, 653, 730
BseDI	CCNNGG	3 cut(s)	541, 728, 729
BseGI	GGATG	3 cut(s)	177, 513, 673
BseLI	CCNNNNNNNGG	1 cut(s)	227
BseMI	GCAATG	1 cut(s)	371
BseNI	ACTGG	2 cut(s)	465, 480
BseRI	GAGGAG	2 cut(s)	143, 759
BseSI	GKGCMC	1 cut(s)	700
BseXI	GCAGC	1 cut(s)	273
Bsh1236I	CGCG	2 cut(s)	11, 172
Bsh1285I	CGRYCG	1 cut(s)	103
BshFI	GGCC	3 cut(s)	220, 451, 456
BsiEI	CGRYCG	1 cut(s)	103
BsiHKAI	GWGCWC	1 cut(s)	700
BsiSI	CCGG	3 cut(s)	221, 457, 763
BslFI	GGGAC	1 cut(s)	738
BslI	CCNNNNNNNGG	1 cut(s)	227
BsmAI	GTCTC	3 cut(s)	42, 193, 741
BsmFI	GGGAC	1 cut(s)	738
BsmI	GAATGC	1 cut(s)	345
BsnI	GGCC	3 cut(s)	220, 451, 456
Bso31I	GGTCTC	1 cut(s)	42
Bsp119I	TTCGAA	1 cut(s)	736
Bsp1286I	GDGCHC	1 cut(s)	700
Bsp143I	GATC	3 cut(s)	70, 100, 148
BspACI	CCGC	8 cut(s)	31, 118, 157, 160, 181, 209, 390, 462
BspANI	GGCC	3 cut(s)	220, 451, 456
BspFNI	CGCG	2 cut(s)	11, 172
BspLI	GGNNCC	4 cut(s)	262, 414, 726, 727
BspMI	ACCTGC	2 cut(s)	24, 725
BspQI	GCTCTTC	1 cut(s)	669
BspT104I	TTCGAA	1 cut(s)	736
BspTNI	GGTCTC	1 cut(s)	42
BsrBI	CCGCTC	2 cut(s)	209, 390
BsrDI	GCAATG	1 cut(s)	371
BsrFI	RCCGGY	1 cut(s)	456
BsrI	ACTGG	2 cut(s)	465, 480
BssAI	RCCGGY	1 cut(s)	456
BssECI	CCNNGG	3 cut(s)	541, 728, 729
BssMI	GATC	3 cut(s)	70, 100, 148
BssSI	CACGAG	1 cut(s)	633
Bst2BI	CACGAG	1 cut(s)	633
Bst2UI	CCWGG	7 cut(s)	291, 358, 448, 453, 543, 653, 730
Bst6I	CTCTTC	1 cut(s)	669
BstAPI	GCANNNNNTGC	1 cut(s)	517
BstBI	TTCGAA	1 cut(s)	736
BstC8I	GCNNGC	2 cut(s)	306, 689
BstF5I	GGATG	3 cut(s)	177, 513, 673
BstFNI	CGCG	2 cut(s)	11, 172
BstHHI	GCGC	2 cut(s)	11, 174
BstKTI	GATC	3 cut(s)	73, 103, 151
BstMAI	GTCTC	3 cut(s)	42, 193, 741
BstMBI	GATC	3 cut(s)	70, 100, 148
BstMCI	CGRYCG	1 cut(s)	103
BstMWI	GCNNNNNNNGC	4 cut(s)	39, 180, 517, 759
BstNI	CCWGG	7 cut(s)	291, 358, 448, 453, 543, 653, 730
BstNSI	RCATGY	1 cut(s)	793
BstSCI	CCNGG	7 cut(s)	289, 356, 446, 451, 541, 651, 728
BstSLI	GKGCMC	1 cut(s)	700
BstUI	CGCG	2 cut(s)	11, 172
BstV1I	GCAGC	1 cut(s)	273
BstX2I	RGATCY	1 cut(s)	70
BstYI	RGATCY	1 cut(s)	70
BsuRI	GGCC	3 cut(s)	220, 451, 456
BtsCI	GGATG	3 cut(s)	177, 513, 673
BtsIMutI	CAGTG	2 cut(s)	472, 487
BveI	ACCTGC	2 cut(s)	24, 725
Cac8I	GCNNGC	2 cut(s)	306, 689
CfoI	GCGC	2 cut(s)	11, 174
Cfr10I	RCCGGY	1 cut(s)	456
Cfr13I	GGNCC	5 cut(s)	218, 260, 459, 559, 725
CpoI	CGGWCCG	1 cut(s)	459
Csp6I	GTAC	2 cut(s)	243, 438
CspI	CGGWCCG	1 cut(s)	459
CviAII	CATG	3 cut(s)	131, 664, 790
CviQI	GTAC	2 cut(s)	243, 438
DpnI	GATC	3 cut(s)	72, 102, 150
DpnII	GATC	3 cut(s)	70, 100, 148
DrdI	GACNNNNNNGTC	1 cut(s)	10
DseDI	GACNNNNNNGTC	1 cut(s)	10
EaeI	YGGCCR	1 cut(s)	449
Eam1104I	CTCTTC	1 cut(s)	669
EarI	CTCTTC	1 cut(s)	669
EciI	GGCGGA	3 cut(s)	146, 170, 451
Eco31I	GGTCTC	1 cut(s)	42
Eco47I	GGWCC	4 cut(s)	260, 459, 559, 725
EcoO109I	RGGNCCY	2 cut(s)	559, 725
EcoRII	CCWGG	7 cut(s)	289, 356, 446, 451, 541, 651, 728
EcoT22I	ATGCAT	1 cut(s)	513
FaeI	CATG	3 cut(s)	134, 667, 793
FalI	AAGNNNNNCTT	2 cut(s)	546, 578
FaqI	GGGAC	1 cut(s)	738
FatI	CATG	3 cut(s)	130, 663, 789
FauI	CCCGC	1 cut(s)	202
FblI	GTMKAC	1 cut(s)	394
Fnu4HI	GCNGC	3 cut(s)	118, 160, 287
FokI	GGATG	3 cut(s)	164, 520, 680
Fsp4HI	GCNGC	3 cut(s)	118, 160, 287
FspBI	CTAG	1 cut(s)	309
GlaI	GCGC	2 cut(s)	10, 173
GluI	GCNGC	3 cut(s)	118, 160, 287
GsuI	CTGGAG	1 cut(s)	674
HaeIII	GGCC	3 cut(s)	220, 451, 456
HapII	CCGG	3 cut(s)	221, 457, 763
HhaI	GCGC	2 cut(s)	11, 174
Hin1II	CATG	3 cut(s)	134, 667, 793
Hin6I	GCGC	2 cut(s)	9, 172
HinP1I	GCGC	2 cut(s)	9, 172
HincII	GTYRAC	1 cut(s)	610
HindII	GTYRAC	1 cut(s)	610
HinfI	GANTC	3 cut(s)	83, 134, 705
HpaII	CCGG	3 cut(s)	221, 457, 763
HphI	GGTGA	1 cut(s)	413
Hpy166II	GTNNAC	4 cut(s)	395, 494, 610, 698
Hpy188I	TCNGA	4 cut(s)	16, 105, 139, 352
Hpy188III	TCNNGA	3 cut(s)	98, 554, 633
Hpy8I	GTNNAC	4 cut(s)	395, 494, 610, 698
Hpy99I	CGWCG	2 cut(s)	16, 143
HpyAV	CCTTC	1 cut(s)	357
HpyCH4V	TGCA	4 cut(s)	376, 511, 520, 698
HpyF10VI	GCNNNNNNNGC	4 cut(s)	39, 180, 517, 759
Hsp92II	CATG	3 cut(s)	134, 667, 793
HspAI	GCGC	2 cut(s)	9, 172
KflI	GGGWCCC	1 cut(s)	725
Kzo9I	GATC	3 cut(s)	70, 100, 148
LguI	GCTCTTC	1 cut(s)	669
LmnI	GCTCC	6 cut(s)	16, 199, 206, 223, 387, 418
Lsp1109I	GCAGC	1 cut(s)	273
LweI	GCATC	3 cut(s)	498, 520, 638
MaeI	CTAG	1 cut(s)	309
MaeIII	GTNAC	2 cut(s)	482, 785
MalI	GATC	3 cut(s)	72, 102, 150
MbiI	CCGCTC	2 cut(s)	209, 390
MboI	GATC	3 cut(s)	70, 100, 148
MboII	GAAGA	1 cut(s)	686
MflI	RGATCY	1 cut(s)	70
MhlI	GDGCHC	1 cut(s)	700
MlsI	TGGCCA	1 cut(s)	451
MluCI	AATT	4 cut(s)	213, 498, 599, 774
MluNI	TGGCCA	1 cut(s)	451
MlyI	GAGTC	1 cut(s)	77
MmeI	TCCRAC	2 cut(s)	162, 238
Mox20I	TGGCCA	1 cut(s)	451
Mph1103I	ATGCAT	1 cut(s)	513
MscI	TGGCCA	1 cut(s)	451
MslI	CAYNNNNRTG	1 cut(s)	129
Msp20I	TGGCCA	1 cut(s)	451
MspI	CCGG	3 cut(s)	221, 457, 763
MspR9I	CCNGG	7 cut(s)	291, 358, 448, 453, 543, 653, 730
Mva1269I	GAATGC	1 cut(s)	345
MvaI	CCWGG	7 cut(s)	291, 358, 448, 453, 543, 653, 730
MvnI	CGCG	2 cut(s)	11, 172
MwoI	GCNNNNNNNGC	4 cut(s)	39, 180, 517, 759
NdeII	GATC	3 cut(s)	70, 100, 148
NlaIII	CATG	3 cut(s)	134, 667, 793
NlaIV	GGNNCC	4 cut(s)	262, 414, 726, 727
NmeAIII	GCCGAG	2 cut(s)	54, 80
NmuCI	GTSAC	2 cut(s)	482, 785
NsiI	ATGCAT	1 cut(s)	513
NspI	RCATGY	1 cut(s)	793
NspV	TTCGAA	1 cut(s)	736
PasI	CCCWGGG	1 cut(s)	729
PciI	ACATGT	1 cut(s)	789
PciSI	GCTCTTC	1 cut(s)	669
PctI	GAATGC	1 cut(s)	345
PfeI	GAWTC	2 cut(s)	134, 705
PkrI	GCNGC	3 cut(s)	119, 161, 288
Ple19I	CGATCG	1 cut(s)	103
PleI	GAGTC	1 cut(s)	77
PpsI	GAGTC	1 cut(s)	77
PpuMI	RGGWCCY	2 cut(s)	559, 725
PscI	ACATGT	1 cut(s)	789
Psp5II	RGGWCCY	2 cut(s)	559, 725
Psp6I	CCWGG	7 cut(s)	289, 356, 446, 451, 541, 651, 728
PspGI	CCWGG	7 cut(s)	289, 356, 446, 451, 541, 651, 728
PspN4I	GGNNCC	4 cut(s)	262, 414, 726, 727
PspPI	GGNCC	5 cut(s)	218, 260, 459, 559, 725
PspPPI	RGGWCCY	2 cut(s)	559, 725
PsuI	RGATCY	1 cut(s)	70
PvuI	CGATCG	1 cut(s)	103
RsaI	GTAC	2 cut(s)	244, 439
RsaNI	GTAC	2 cut(s)	243, 438
RseI	CAYNNNNRTG	1 cut(s)	129
Rsr2I	CGGWCCG	1 cut(s)	459
RsrII	CGGWCCG	1 cut(s)	459
SapI	GCTCTTC	1 cut(s)	669
SatI	GCNGC	3 cut(s)	118, 160, 287
Sau3AI	GATC	3 cut(s)	70, 100, 148
Sau96I	GGNCC	5 cut(s)	218, 260, 459, 559, 725
ScaI	AGTACT	1 cut(s)	439
SchI	GAGTC	1 cut(s)	77
ScrFI	CCNGG	7 cut(s)	291, 358, 448, 453, 543, 653, 730
SduI	GDGCHC	1 cut(s)	700
SfaNI	GCATC	3 cut(s)	498, 520, 638
SfuI	TTCGAA	1 cut(s)	736
SinI	GGWCC	4 cut(s)	260, 459, 559, 725
SmiMI	CAYNNNNRTG	1 cut(s)	129
SmlI	CTYRAG	4 cut(s)	323, 487, 552, 571
SmoI	CTYRAG	4 cut(s)	323, 487, 552, 571
Sse9I	AATT	4 cut(s)	213, 498, 599, 774
SsiI	CCGC	8 cut(s)	31, 118, 157, 160, 181, 209, 390, 462
SspMI	CTAG	1 cut(s)	309
StyD4I	CCNGG	7 cut(s)	289, 356, 446, 451, 541, 651, 728
TaqI	TCGA	2 cut(s)	81, 736
TasI	AATT	4 cut(s)	213, 498, 599, 774
TatI	WGTACW	1 cut(s)	437
TauI	GCSGC	2 cut(s)	120, 162
TfiI	GAWTC	2 cut(s)	134, 705
TscAI	CASTG	2 cut(s)	472, 487
TseFI	GTSAC	2 cut(s)	482, 785
TseI	GCWGC	1 cut(s)	286
Tsp45I	GTSAC	2 cut(s)	482, 785
TspDTI	ATGAA	3 cut(s)	147, 438, 652
TspGWI	ACGGA	1 cut(s)	212
TspRI	CASTG	2 cut(s)	472, 487
VneI	GTGCAC	1 cut(s)	696
VpaK11BI	GGWCC	4 cut(s)	260, 459, 559, 725
XceI	RCATGY	1 cut(s)	793
XmiI	GTMKAC	1 cut(s)	394
XspI	CTAG	1 cut(s)	309
ZrmI	AGTACT	1 cut(s)	439
Zsp2I	ATGCAT	1 cut(s)	513

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.