Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0005406

Physical Location & Seq

Genomic Coordinates Reverse (-)

43341855 .. 43346040

Gene Structure 4186 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG329300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGGCCAACCTCCAATCTAAGTACATGGACGAAGATGAGGAAGAAGACGAACAATCAAAAACCACCACCATTGCCGCCGTCGCAATCACCGAGCTCGTTGGTTCTTATACATTTGTCGACCTAACAGAGCGTGGAGCTGGAATTGGCCCAGAGCAATCGGGTACGGGTAATCAGGTTGGACCGAGAGTGAGTGGGAATGAGAGGTTGCCTGGTGCTGTTGTGCTTGCTAGGGAGAGGCTACTTTGGAAACCAGACGACGCAGGGCATTACATATATATAGGAGTGTTCTACTTGGTGATGATCACAGCCTTGCCCAATCTAGAGGTTCACGAGCTGGATGAGCTCCCGGAGCAGTGGCAGAGGTTCAAGTTGGCTTGGCTTTGTAAGGAGCTGCCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001664 GO:0003674 GO:0003824 GO:0004842 GO:0005102 GO:0005109 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007267 GO:0008150 GO:0008152 GO:0008283 GO:0009056 GO:0009057 GO:0009966 GO:0009968 GO:0009987 GO:0010498 GO:0010646 GO:0010648 GO:0016020 GO:0016021 GO:0016055 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0022603 GO:0023051 GO:0023052 GO:0023057 GO:0030111 GO:0030163 GO:0030178 GO:0031224 GO:0031226 GO:0032446 GO:0032801 GO:0035567 GO:0036211 GO:0038018 GO:0043112 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044425 GO:0044459 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051603 GO:0051716 GO:0060070 GO:0060071 GO:0060828 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0071944 GO:0072089 GO:0090090 GO:0090175 GO:0140096 GO:0198738 GO:1901564 GO:1901565 GO:1901575 GO:1905114 GO:1905330 GO:2000026 GO:2000027 GO:2000050 GO:2000051

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

132

Amino Acids

14.78

Weight (kDa)

4.49

Isoelectric Point (pI)

46.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005406)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49850
fragaria_vesca	FvH4_2g04490 FvH4_2g04490
malus_domestica	MD05G1095900.v1.1 MD09G1148100.v1.1 MD10G1102100.v1.1
prunus_persica	Prupe.8G140300_v2.0.a1 Prupe.8G140300_v2.0.a1 Prupe.8G140300_v2.0.a1 Prupe.8G140300_v2.0.a1
pyrus_communis	pycom05g09460 pycom10g08780
rosa_chinensis	RchiOBHm_Chr6g0253981
rosa_laevigata	RLG00000014951
rosa_multiflora	Rmu_sc0001716.1_g000017
rosa_roxburghii	Rroxscaffold_7G00211330
rosa_rugosa	Rorug04G0080100 Rorug05G0548700
rosa_samantha	Rh2BG479300 Rh5DG329300 Rh6AG065200 Rh6AG082700 Rh6BG058200 Rh6CG058200 Rh6CG058300 Rh6DG055100 Rh6DG069100 Rh7CG154800
rosa_wichuraiana	Rw6G005740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	117
AciI	CCGC	1 cut(s)	75
AcoI	YGGCCR	1 cut(s)	3
AfaI	GTAC	2 cut(s)	23, 163
AgsI	TTSAA	1 cut(s)	367
AjnI	CCWGG	1 cut(s)	208
AluBI	AGCT	5 cut(s)	94, 137, 334, 343, 391
AluI	AGCT	5 cut(s)	94, 137, 334, 343, 391
Alw21I	GWGCWC	2 cut(s)	96, 345
AoxI	GGCC	2 cut(s)	3, 145
ApeKI	GCWGC	1 cut(s)	391
AspS9I	GGNCC	2 cut(s)	146, 179
AsuC2I	CCSGG	1 cut(s)	347
AsuHPI	GGTGA	2 cut(s)	79, 307
AvaII	GGWCC	1 cut(s)	179
BalI	TGGCCA	1 cut(s)	5
BanII	GRGCYC	2 cut(s)	96, 345
BauI	CACGAG	1 cut(s)	329
BbsI	GAAGAC	1 cut(s)	51
Bbv12I	GWGCWC	2 cut(s)	96, 345
BbvI	GCAGC	1 cut(s)	378
BceAI	ACGGC	1 cut(s)	62
BciT130I	CCWGG	1 cut(s)	210
BclI	TGATCA	1 cut(s)	300
BcnI	CCSGG	1 cut(s)	347
BfaI	CTAG	3 cut(s)	228, 320, 397
BisI	GCNGC	2 cut(s)	75, 392
BlsI	GCNGC	2 cut(s)	76, 393
Bme1390I	CCNGG	2 cut(s)	210, 347
Bme18I	GGWCC	1 cut(s)	179
BmgT120I	GGNCC	2 cut(s)	146, 179
BmrFI	CCNGG	2 cut(s)	210, 347
BpiI	GAAGAC	1 cut(s)	51
BpuMI	CCSGG	1 cut(s)	347
Bse3DI	GCAATG	1 cut(s)	69
BseBI	CCWGG	1 cut(s)	210
BseGI	GGATG	1 cut(s)	343
BseMI	GCAATG	1 cut(s)	69
BseXI	GCAGC	1 cut(s)	378
BshFI	GGCC	2 cut(s)	5, 147
BsiHKAI	GWGCWC	2 cut(s)	96, 345
BsiSI	CCGG	1 cut(s)	347
BsnI	GGCC	2 cut(s)	5, 147
Bsp1286I	GDGCHC	2 cut(s)	96, 345
Bsp143I	GATC	1 cut(s)	300
BspACI	CCGC	1 cut(s)	75
BspANI	GGCC	2 cut(s)	5, 147
BsrDI	GCAATG	1 cut(s)	69
BssMI	GATC	1 cut(s)	300
BssSI	CACGAG	1 cut(s)	329
Bst2BI	CACGAG	1 cut(s)	329
Bst2UI	CCWGG	1 cut(s)	210
BstC8I	GCNNGC	1 cut(s)	225
BstDEI	CTNAG	1 cut(s)	18
BstF5I	GGATG	1 cut(s)	343
BstKTI	GATC	1 cut(s)	303
BstMBI	GATC	1 cut(s)	300
BstMWI	GCNNNNNNNGC	3 cut(s)	80, 340, 349
BstNI	CCWGG	1 cut(s)	210
BstSCI	CCNGG	2 cut(s)	208, 345
BstV1I	GCAGC	1 cut(s)	378
BstV2I	GAAGAC	1 cut(s)	51
BsuRI	GGCC	2 cut(s)	5, 147
BtsCI	GGATG	1 cut(s)	343
BtsI	GCAGTG	1 cut(s)	359
BtsIMutI	CAGTG	1 cut(s)	359
Cac8I	GCNNGC	1 cut(s)	225
Cfr13I	GGNCC	2 cut(s)	146, 179
CseI	GACGC	1 cut(s)	266
Csp6I	GTAC	2 cut(s)	22, 162
CspCI	CAANNNNNGTGG	2 cut(s)	52, 87
CviAII	CATG	1 cut(s)	25
CviQI	GTAC	2 cut(s)	22, 162
DdeI	CTNAG	1 cut(s)	18
DpnI	GATC	1 cut(s)	302
DpnII	GATC	1 cut(s)	300
EaeI	YGGCCR	1 cut(s)	3
Ecl136II	GAGCTC	2 cut(s)	94, 343
Eco24I	GRGCYC	2 cut(s)	96, 345
Eco47I	GGWCC	1 cut(s)	179
Eco53kI	GAGCTC	2 cut(s)	94, 343
EcoICRI	GAGCTC	2 cut(s)	94, 343
EcoRII	CCWGG	1 cut(s)	208
EcoT38I	GRGCYC	2 cut(s)	96, 345
FaeI	CATG	1 cut(s)	28
FaiI	YATR	6 cut(s)	26, 108, 272, 274, 276, 278
FatI	CATG	1 cut(s)	24
FbaI	TGATCA	1 cut(s)	300
FblI	GTMKAC	1 cut(s)	117
Fnu4HI	GCNGC	2 cut(s)	75, 392
FokI	GGATG	1 cut(s)	350
FriOI	GRGCYC	2 cut(s)	96, 345
Fsp4HI	GCNGC	2 cut(s)	75, 392
FspBI	CTAG	3 cut(s)	228, 320, 397
GluI	GCNGC	2 cut(s)	75, 392
HaeIII	GGCC	2 cut(s)	5, 147
HapII	CCGG	1 cut(s)	347
HgaI	GACGC	1 cut(s)	266
Hin1II	CATG	1 cut(s)	28
HincII	GTYRAC	1 cut(s)	118
HindII	GTYRAC	1 cut(s)	118
HpaII	CCGG	1 cut(s)	347
HphI	GGTGA	2 cut(s)	79, 307
Hpy166II	GTNNAC	2 cut(s)	118, 328
Hpy188III	TCNNGA	2 cut(s)	320, 329
Hpy8I	GTNNAC	2 cut(s)	118, 328
Hpy99I	CGWCG	2 cut(s)	83, 260
HpyF10VI	GCNNNNNNNGC	3 cut(s)	80, 340, 349
HpyF3I	CTNAG	1 cut(s)	18
Hsp92II	CATG	1 cut(s)	28
Ksp22I	TGATCA	1 cut(s)	300
Kzo9I	GATC	1 cut(s)	300
LmnI	GCTCC	4 cut(s)	134, 348, 349, 388
LpnPI	CCDG	9 cut(s)	123, 158, 162, 195, 222, 246, 264, 320, 360
Lsp1109I	GCAGC	1 cut(s)	378
MaeI	CTAG	3 cut(s)	228, 320, 397
MalI	GATC	1 cut(s)	302
MboI	GATC	1 cut(s)	300
MboII	GAAGA	3 cut(s)	44, 53, 56
MhlI	GDGCHC	2 cut(s)	96, 345
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	1 cut(s)	141
MluNI	TGGCCA	1 cut(s)	5
MmeI	TCCRAC	1 cut(s)	157
MnlI	CCTC	6 cut(s)	20, 31, 195, 228, 316, 354
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	1 cut(s)	347
MspR9I	CCNGG	2 cut(s)	210, 347
MvaI	CCWGG	1 cut(s)	210
MwoI	GCNNNNNNNGC	3 cut(s)	80, 340, 349
NciI	CCSGG	1 cut(s)	347
NdeII	GATC	1 cut(s)	300
NlaIII	CATG	1 cut(s)	28
PcsI	WCGNNNNNNNCGW	1 cut(s)	87
PfoI	TCCNGGA	1 cut(s)	345
PkrI	GCNGC	2 cut(s)	76, 393
Psp124BI	GAGCTC	2 cut(s)	96, 345
Psp6I	CCWGG	1 cut(s)	208
PspGI	CCWGG	1 cut(s)	208
PspPI	GGNCC	2 cut(s)	146, 179
RsaI	GTAC	2 cut(s)	23, 163
RsaNI	GTAC	2 cut(s)	22, 162
SacI	GAGCTC	2 cut(s)	96, 345
SalI	GTCGAC	1 cut(s)	116
SatI	GCNGC	2 cut(s)	75, 392
Sau3AI	GATC	1 cut(s)	300
Sau96I	GGNCC	2 cut(s)	146, 179
ScrFI	CCNGG	2 cut(s)	210, 347
SduI	GDGCHC	2 cut(s)	96, 345
SinI	GGWCC	1 cut(s)	179
Sse9I	AATT	1 cut(s)	141
SsiI	CCGC	1 cut(s)	75
SspMI	CTAG	3 cut(s)	228, 320, 397
SstI	GAGCTC	2 cut(s)	96, 345
StyD4I	CCNGG	2 cut(s)	208, 345
TaqI	TCGA	1 cut(s)	117
TaqII	GACCGA	1 cut(s)	196
TasI	AATT	1 cut(s)	141
TatI	WGTACW	1 cut(s)	21
TauI	GCSGC	1 cut(s)	77
TscAI	CASTG	1 cut(s)	359
TseI	GCWGC	1 cut(s)	391
TspRI	CASTG	1 cut(s)	359
VpaK11BI	GGWCC	1 cut(s)	179
XbaI	TCTAGA	1 cut(s)	319
XmiI	GTMKAC	1 cut(s)	117
XspI	CTAG	3 cut(s)	228, 320, 397

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.