Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0005406

Physical Location & Seq

Genomic Coordinates Forward (+)

5837876 .. 5838617

Gene Structure 742 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG058300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 201 bp

ATGCATCTCTTGCAAGAAGCAAACAAGAAGCCTCCAGGTCTTACTCAAGAGGTCCTTGATGCCTCATTGCCTCGAGTGTATGAACTTTTCGGCAACACAGAATTGGGTGTTGAAGGGTTGGTATCAAAAGCATCACGAGATTGTAAACGGCAGAATGATTTTGATGACGGAAAACTATATATTGGTTTGATGACACTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001664 GO:0003674 GO:0003824 GO:0004842 GO:0005102 GO:0005109 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007267 GO:0008150 GO:0008152 GO:0008283 GO:0009056 GO:0009057 GO:0009966 GO:0009968 GO:0009987 GO:0010498 GO:0010646 GO:0010648 GO:0016020 GO:0016021 GO:0016055 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0022603 GO:0023051 GO:0023052 GO:0023057 GO:0030111 GO:0030163 GO:0030178 GO:0031224 GO:0031226 GO:0032446 GO:0032801 GO:0035567 GO:0036211 GO:0038018 GO:0043112 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044425 GO:0044459 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051603 GO:0051716 GO:0060070 GO:0060071 GO:0060828 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0071944 GO:0072089 GO:0090090 GO:0090175 GO:0140096 GO:0198738 GO:1901564 GO:1901565 GO:1901575 GO:1905114 GO:1905330 GO:2000026 GO:2000027 GO:2000050 GO:2000051

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

66

Amino Acids

7.36

Weight (kDa)

5.18

Isoelectric Point (pI)

41.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005406)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49850
fragaria_vesca	FvH4_2g04490 FvH4_2g04490
malus_domestica	MD05G1095900.v1.1 MD09G1148100.v1.1 MD10G1102100.v1.1
prunus_persica	Prupe.8G140300_v2.0.a1 Prupe.8G140300_v2.0.a1 Prupe.8G140300_v2.0.a1 Prupe.8G140300_v2.0.a1
pyrus_communis	pycom05g09460 pycom10g08780
rosa_chinensis	RchiOBHm_Chr6g0253981
rosa_laevigata	RLG00000014951
rosa_multiflora	Rmu_sc0001716.1_g000017
rosa_roxburghii	Rroxscaffold_7G00211330
rosa_rugosa	Rorug04G0080100 Rorug05G0548700
rosa_samantha	Rh2BG479300 Rh5DG329300 Rh6AG065200 Rh6AG082700 Rh6BG058200 Rh6CG058200 Rh6CG058300 Rh6DG055100 Rh6DG069100 Rh7CG154800
rosa_wichuraiana	Rw6G005740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AgsI	TTSAA	1 cut(s)	113
AjnI	CCWGG	1 cut(s)	34
Ama87I	CYCGRG	1 cut(s)	72
AspS9I	GGNCC	1 cut(s)	52
AvaI	CYCGRG	1 cut(s)	72
AvaII	GGWCC	1 cut(s)	52
BauI	CACGAG	1 cut(s)	135
BceAI	ACGGC	1 cut(s)	164
BciT130I	CCWGG	1 cut(s)	36
Bme1390I	CCNGG	1 cut(s)	36
Bme18I	GGWCC	1 cut(s)	52
BmeT110I	CYCGRG	1 cut(s)	72
BmgT120I	GGNCC	1 cut(s)	52
BmrFI	CCNGG	1 cut(s)	36
BmsI	GCATC	3 cut(s)	13, 49, 140
BpmI	CTGGAG	1 cut(s)	18
BpuEI	CTTGAG	1 cut(s)	30
Bse3DI	GCAATG	1 cut(s)	65
BseBI	CCWGG	1 cut(s)	36
BseMI	GCAATG	1 cut(s)	65
BsiHKCI	CYCGRG	1 cut(s)	72
BsoBI	CYCGRG	1 cut(s)	72
BsrDI	GCAATG	1 cut(s)	65
BssSI	CACGAG	1 cut(s)	135
Bst2BI	CACGAG	1 cut(s)	135
Bst2UI	CCWGG	1 cut(s)	36
BstAPI	GCANNNNNTGC	1 cut(s)	10
BstMWI	GCNNNNNNNGC	1 cut(s)	10
BstNI	CCWGG	1 cut(s)	36
BstSCI	CCNGG	1 cut(s)	34
Cfr13I	GGNCC	1 cut(s)	52
CviJI	RGCY	1 cut(s)	31
CviKI_1	RGCY	1 cut(s)	31
Eco47I	GGWCC	1 cut(s)	52
Eco88I	CYCGRG	1 cut(s)	72
EcoO109I	RGGNCCY	1 cut(s)	52
EcoRII	CCWGG	1 cut(s)	34
EcoT22I	ATGCAT	1 cut(s)	6
FaiI	YATR	4 cut(s)	81, 178, 180, 199
FalI	AAGNNNNNCTT	2 cut(s)	39, 71
GsuI	CTGGAG	1 cut(s)	18
Hpy166II	GTNNAC	1 cut(s)	146
Hpy188III	TCNNGA	2 cut(s)	47, 135
Hpy8I	GTNNAC	1 cut(s)	146
HpyAV	CCTTC	1 cut(s)	107
HpyCH4V	TGCA	2 cut(s)	4, 13
HpyF10VI	GCNNNNNNNGC	1 cut(s)	10
LpnPI	CCDG	2 cut(s)	21, 48
LweI	GCATC	3 cut(s)	13, 49, 140
MluCI	AATT	1 cut(s)	101
MnlI	CCTC	4 cut(s)	42, 43, 73, 81
Mph1103I	ATGCAT	1 cut(s)	6
MspR9I	CCNGG	1 cut(s)	36
MvaI	CCWGG	1 cut(s)	36
MwoI	GCNNNNNNNGC	1 cut(s)	10
NsiI	ATGCAT	1 cut(s)	6
PaeR7I	CTCGAG	1 cut(s)	72
PpuMI	RGGWCCY	1 cut(s)	52
Psp5II	RGGWCCY	1 cut(s)	52
Psp6I	CCWGG	1 cut(s)	34
PspGI	CCWGG	1 cut(s)	34
PspPI	GGNCC	1 cut(s)	52
PspPPI	RGGWCCY	1 cut(s)	52
PspXI	VCTCGAGB	1 cut(s)	72
Sau96I	GGNCC	1 cut(s)	52
ScrFI	CCNGG	1 cut(s)	36
SetI	ASST	2 cut(s)	40, 54
SfaNI	GCATC	3 cut(s)	13, 49, 140
Sfr274I	CTCGAG	1 cut(s)	72
SinI	GGWCC	1 cut(s)	52
SlaI	CTCGAG	1 cut(s)	72
SmlI	CTYRAG	2 cut(s)	45, 72
SmoI	CTYRAG	2 cut(s)	45, 72
Sse9I	AATT	1 cut(s)	101
StyD4I	CCNGG	1 cut(s)	34
TaqI	TCGA	1 cut(s)	73
TasI	AATT	1 cut(s)	101
TspDTI	ATGAA	1 cut(s)	96
TspGWI	ACGGA	1 cut(s)	183
VpaK11BI	GGWCC	1 cut(s)	52
XhoI	CTCGAG	1 cut(s)	72
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.