Rh7CG154800
ERF Family

Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin Fzo YdjA family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0005406
Physical Location & Seq
Forward (+)
12721926 .. 12730932
9007 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG154800.1

Sequence Viewer

Length: 663 bp
ATGGCCAACCTCCAATCCAAGTACATGGATGAAGATGAGGAAGAAGACGAACAATCAAAAACCACCACCATTGCCGTCGTCGCAATCACCGAGCTCGAGCATGGAGCTGGAATTGGCCCGGAGCAATCGGGTACGGGTAATCGGGTTGGACCGAGAGTGAGTGGGAATGAGAGGCTGCCTGGTGCTGTTGTGCTTACTAGGGAGAGGCTACTTCGGAAACTAGACGGTCAACCAGATAGTATTGTGCAAGGCATTGAAAATATGGTTCGCTCCTACATTGAGAAGCCCAACAGTATAATTTTAGCAATTTCACCTGCTAATCAAGATCTTGTTACATCAGATGCAATTAAAATCTCTAGTGAAGTGGATCCAACAGCAGTTTCGCGGCGTTGGCGCCTAATATCCAAAGAAACCTTTACCTTCTCTCTGCTAAACAGGATTTGCGGTGAGTTAGGTAGAACTAATTCCTTCAAGGCCATTCAGGAAAATTTTGGTTTCAGATCTATAAGAGATAGTCATGAGGATCTAACGGATTCCTTGTACCTACAAGTCAAAATTGTGAGCCAGACTCTTATTTTTGTCACTCAATCACGAAGCTGGTCCTTTTTAGAACGCCTTGGACTACTATTACTCAGTGCTGTTGCCATTGCCCAGCTGTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000266 GO:0000278 GO:0000280 GO:0000281 GO:0000902 GO:0000904 GO:0000910 GO:0000911 GO:0000919 GO:0003002 GO:0003006 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005856 GO:0005874 GO:0005886 GO:0005911 GO:0006810 GO:0006897 GO:0006898 GO:0006996 GO:0007005 GO:0007049 GO:0007275 GO:0007389 GO:0008017 GO:0008092 GO:0008150 GO:0009504 GO:0009506 GO:0009507 GO:0009524 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009832 GO:0009888 GO:0009920 GO:0009987 GO:0010015 GO:0010026 GO:0010051 GO:0010053 GO:0010054 GO:0010090 GO:0010091 GO:0010154 GO:0015630 GO:0015631 GO:0016020 GO:0016043 GO:0016192 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0019899 GO:0019900 GO:0019901 GO:0021700 GO:0022402 GO:0022414 GO:0022607 GO:0022622 GO:0030054 GO:0030154 GO:0030276 GO:0031090 GO:0031976 GO:0031984 GO:0032501 GO:0032502 GO:0032506 GO:0032878 GO:0032989 GO:0034357 GO:0042546 GO:0042651 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043424 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044434 GO:0044435 GO:0044436 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048285 GO:0048316 GO:0048364 GO:0048468 GO:0048469 GO:0048608 GO:0048731 GO:0048764 GO:0048765 GO:0048766 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051179 GO:0051234 GO:0051301 GO:0055035 GO:0055044 GO:0061458 GO:0061640 GO:0065007 GO:0071554 GO:0071669 GO:0071695 GO:0071840 GO:0071944 GO:0072583 GO:0090558 GO:0090626 GO:0090627 GO:0098588 GO:0098657 GO:0098805 GO:0099080 GO:0099081 GO:0099402 GO:0099512 GO:0099513 GO:0140014 GO:1902410 GO:1903047 GO:1905392 GO:2000114
KEGG Pathways
Metabolic & Signaling
ko04072 ko04144 ko04721 ko04961 ko05100 map04072 map04144 map04721 map04961 map05100
Pfam Domains
Protein Families
Dynamin_M Dynamin_N GED

Protein Analysis

220

Amino Acids

24.44

Weight (kDa)

5.22

Isoelectric Point (pI)

51.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dynamin_N PF00350 83 - 126 2.5e-07 Dynamin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 322
Acc36I ACCTGC 1 cut(s) 322
AccB1I GGYRCC 1 cut(s) 393
AccII CGCG 1 cut(s) 385
AciI CCGC 2 cut(s) 385, 444
AclWI GGATC 3 cut(s) 362, 375, 531
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 487
AcyI GRCGYC 1 cut(s) 394
AfaI GTAC 3 cut(s) 23, 133, 542
AgsI TTSAA 2 cut(s) 257, 472
AjnI CCWGG 1 cut(s) 178
AjuI GAANNNNNNNTTGG 2 cut(s) 364, 396
AluBI AGCT 4 cut(s) 94, 107, 597, 655
AluI AGCT 4 cut(s) 94, 107, 597, 655
Alw21I GWGCWC 1 cut(s) 96
AlwI GGATC 3 cut(s) 362, 375, 531
Ama87I CYCGRG 1 cut(s) 95
AoxI GGCC 3 cut(s) 3, 115, 474
ApeKI GCWGC 1 cut(s) 175
ApoI RAATTY 1 cut(s) 487
Asp700I GAANNNNTTC 1 cut(s) 463
AspLEI GCGC 1 cut(s) 396
AspS9I GGNCC 3 cut(s) 116, 149, 600
AsuC2I CCSGG 1 cut(s) 119
AsuHPI GGTGA 3 cut(s) 79, 303, 458
AvaI CYCGRG 1 cut(s) 95
AvaII GGWCC 2 cut(s) 149, 600
BalI TGGCCA 1 cut(s) 5
BamHI GGATCC 1 cut(s) 367
BanI GGYRCC 1 cut(s) 393
BanII GRGCYC 1 cut(s) 96
BbsI GAAGAC 1 cut(s) 51
Bbv12I GWGCWC 1 cut(s) 96
BbvI GCAGC 1 cut(s) 162
BceAI ACGGC 1 cut(s) 59
BciT130I CCWGG 1 cut(s) 180
BcnI CCSGG 1 cut(s) 119
BfaI CTAG 3 cut(s) 198, 221, 357
BfoI RGCGCY 1 cut(s) 397
BfuAI ACCTGC 1 cut(s) 322
BglII AGATCT 2 cut(s) 325, 500
BisI GCNGC 2 cut(s) 176, 386
BlsI GCNGC 2 cut(s) 177, 387
Bme1390I CCNGG 2 cut(s) 119, 180
Bme18I GGWCC 2 cut(s) 149, 600
BmeT110I CYCGRG 1 cut(s) 95
BmgT120I GGNCC 3 cut(s) 116, 149, 600
BmiI GGNNCC 2 cut(s) 369, 395
BmrFI CCNGG 2 cut(s) 119, 180
BmsI GCATC 1 cut(s) 331
BpiI GAAGAC 1 cut(s) 51
BplI GAGNNNNNCTC 2 cut(s) 553, 585
BpuMI CCSGG 1 cut(s) 119
BsaHI GRCGYC 1 cut(s) 394
BsaJI CCNNGG 1 cut(s) 616
Bse3DI GCAATG 2 cut(s) 69, 645
BseBI CCWGG 1 cut(s) 180
BseDI CCNNGG 1 cut(s) 616
BseGI GGATG 1 cut(s) 34
BseMI GCAATG 2 cut(s) 69, 645
BseMII CTCAG 1 cut(s) 646
BseXI GCAGC 1 cut(s) 162
BseYI CCCAGC 1 cut(s) 651
Bsh1236I CGCG 1 cut(s) 385
BshFI GGCC 3 cut(s) 5, 117, 476
BshNI GGYRCC 1 cut(s) 393
BsiHKAI GWGCWC 1 cut(s) 96
BsiHKCI CYCGRG 1 cut(s) 95
BsiSI CCGG 1 cut(s) 119
BsnI GGCC 3 cut(s) 5, 117, 476
BsoBI CYCGRG 1 cut(s) 95
Bsp1286I GDGCHC 1 cut(s) 96
Bsp143I GATC 4 cut(s) 325, 367, 500, 523
BspACI CCGC 2 cut(s) 385, 444
BspANI GGCC 3 cut(s) 5, 117, 476
BspCNI CTCAG 1 cut(s) 645
BspFNI CGCG 1 cut(s) 385
BspHI TCATGA 1 cut(s) 517
BspLI GGNNCC 2 cut(s) 369, 395
BspMI ACCTGC 1 cut(s) 322
BspPI GGATC 3 cut(s) 362, 375, 531
BspT107I GGYRCC 1 cut(s) 393
BsrDI GCAATG 2 cut(s) 69, 645
BssECI CCNNGG 1 cut(s) 616
BssMI GATC 4 cut(s) 325, 367, 500, 523
BssNI GRCGYC 1 cut(s) 394
BssT1I CCWWGG 1 cut(s) 616
Bst2UI CCWGG 1 cut(s) 180
Bst4CI ACNGT 2 cut(s) 227, 293
BstACI GRCGYC 1 cut(s) 394
BstDEI CTNAG 1 cut(s) 632
BstF5I GGATG 1 cut(s) 34
BstFNI CGCG 1 cut(s) 385
BstH2I RGCGCY 1 cut(s) 397
BstHHI GCGC 1 cut(s) 396
BstKTI GATC 4 cut(s) 328, 370, 503, 526
BstMBI GATC 4 cut(s) 325, 367, 500, 523
BstMWI GCNNNNNNNGC 2 cut(s) 80, 391
BstNI CCWGG 1 cut(s) 180
BstSCI CCNGG 2 cut(s) 117, 178
BstUI CGCG 1 cut(s) 385
BstV1I GCAGC 1 cut(s) 162
BstV2I GAAGAC 1 cut(s) 51
BstX2I RGATCY 4 cut(s) 325, 367, 500, 523
BstXI CCANNNNNNTGG 1 cut(s) 25
BstYI RGATCY 4 cut(s) 325, 367, 500, 523
BsuRI GGCC 3 cut(s) 5, 117, 476
BtsCI GGATG 1 cut(s) 34
BtsIMutI CAGTG 1 cut(s) 640
BveI ACCTGC 1 cut(s) 322
CciI TCATGA 1 cut(s) 517
CfoI GCGC 1 cut(s) 396
Cfr13I GGNCC 3 cut(s) 116, 149, 600
Csp6I GTAC 3 cut(s) 22, 132, 541
CspCI CAANNNNNGTGG 2 cut(s) 52, 87
CviAII CATG 3 cut(s) 25, 101, 518
CviQI GTAC 3 cut(s) 22, 132, 541
DdeI CTNAG 1 cut(s) 632
DinI GGCGCC 1 cut(s) 395
DpnI GATC 4 cut(s) 327, 369, 502, 525
DpnII GATC 4 cut(s) 325, 367, 500, 523
EaeI YGGCCR 1 cut(s) 3
Ecl136II GAGCTC 1 cut(s) 94
Eco130I CCWWGG 1 cut(s) 616
Eco24I GRGCYC 1 cut(s) 96
Eco47I GGWCC 2 cut(s) 149, 600
Eco53kI GAGCTC 1 cut(s) 94
Eco88I CYCGRG 1 cut(s) 95
EcoICRI GAGCTC 1 cut(s) 94
EcoRII CCWGG 1 cut(s) 178
EcoT14I CCWWGG 1 cut(s) 616
EcoT38I GRGCYC 1 cut(s) 96
EgeI GGCGCC 1 cut(s) 395
EheI GGCGCC 1 cut(s) 395
ErhI CCWWGG 1 cut(s) 616
FaeI CATG 3 cut(s) 28, 104, 521
FaiI YATR 6 cut(s) 26, 102, 263, 296, 506, 519
FatI CATG 3 cut(s) 24, 100, 517
Fnu4HI GCNGC 2 cut(s) 176, 386
FokI GGATG 1 cut(s) 41
FriOI GRGCYC 1 cut(s) 96
Fsp4HI GCNGC 2 cut(s) 176, 386
FspBI CTAG 3 cut(s) 198, 221, 357
GlaI GCGC 1 cut(s) 395
GluI GCNGC 2 cut(s) 176, 386
GsaI CCCAGC 1 cut(s) 655
HaeII RGCGCY 1 cut(s) 397
HaeIII GGCC 3 cut(s) 5, 117, 476
HapII CCGG 1 cut(s) 119
HhaI GCGC 1 cut(s) 396
Hin1I GRCGYC 1 cut(s) 394
Hin1II CATG 3 cut(s) 28, 104, 521
Hin6I GCGC 1 cut(s) 394
HinP1I GCGC 1 cut(s) 394
HincII GTYRAC 1 cut(s) 230
HindII GTYRAC 1 cut(s) 230
HinfI GANTC 2 cut(s) 533, 568
HpaII CCGG 1 cut(s) 119
HphI GGTGA 3 cut(s) 79, 303, 458
Hpy166II GTNNAC 1 cut(s) 230
Hpy188I TCNGA 3 cut(s) 216, 340, 500
Hpy188III TCNNGA 4 cut(s) 323, 482, 518, 591
Hpy8I GTNNAC 1 cut(s) 230
Hpy99I CGWCG 2 cut(s) 80, 83
HpyAV CCTTC 2 cut(s) 430, 478
HpyCH4III ACNGT 2 cut(s) 227, 293
HpyCH4V TGCA 2 cut(s) 247, 344
HpyF10VI GCNNNNNNNGC 2 cut(s) 80, 391
HpyF3I CTNAG 1 cut(s) 632
Hsp92I GRCGYC 1 cut(s) 394
Hsp92II CATG 3 cut(s) 28, 104, 521
HspAI GCGC 1 cut(s) 394
KasI GGCGCC 1 cut(s) 393
Kzo9I GATC 4 cut(s) 325, 367, 500, 523
LmnI GCTCC 3 cut(s) 104, 121, 275
Lsp1109I GCAGC 1 cut(s) 162
LweI GCATC 1 cut(s) 331
MaeI CTAG 3 cut(s) 198, 221, 357
MaeIII GTNAC 2 cut(s) 331, 580
MalI GATC 4 cut(s) 327, 369, 502, 525
MboI GATC 4 cut(s) 325, 367, 500, 523
MboII GAAGA 3 cut(s) 44, 53, 56
MflI RGATCY 4 cut(s) 325, 367, 500, 523
MhlI GDGCHC 1 cut(s) 96
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 7 cut(s) 111, 297, 306, 345, 463, 487, 555
MluNI TGGCCA 1 cut(s) 5
Mly113I GGCGCC 1 cut(s) 394
MlyI GAGTC 1 cut(s) 562
MmeI TCCRAC 2 cut(s) 127, 395
MnlI CCTC 5 cut(s) 20, 31, 165, 198, 514
Mox20I TGGCCA 1 cut(s) 5
MroXI GAANNNNTTC 1 cut(s) 463
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 348
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 655
MspI CCGG 1 cut(s) 119
MspR9I CCNGG 2 cut(s) 119, 180
MvaI CCWGG 1 cut(s) 180
MvnI CGCG 1 cut(s) 385
MwoI GCNNNNNNNGC 2 cut(s) 80, 391
NarI GGCGCC 1 cut(s) 394
NciI CCSGG 1 cut(s) 119
NdeII GATC 4 cut(s) 325, 367, 500, 523
NlaIII CATG 3 cut(s) 28, 104, 521
NlaIV GGNNCC 2 cut(s) 369, 395
NmuCI GTSAC 1 cut(s) 580
PaeR7I CTCGAG 1 cut(s) 95
PagI TCATGA 1 cut(s) 517
PaqCI CACCTGC 1 cut(s) 322
PcsI WCGNNNNNNNCGW 1 cut(s) 87
PdmI GAANNNNTTC 1 cut(s) 463
PfeI GAWTC 1 cut(s) 533
PkrI GCNGC 2 cut(s) 177, 387
PleI GAGTC 1 cut(s) 562
PluTI GGCGCC 1 cut(s) 397
PpsI GAGTC 1 cut(s) 562
Psp124BI GAGCTC 1 cut(s) 96
Psp6I CCWGG 1 cut(s) 178
PspFI CCCAGC 1 cut(s) 651
PspGI CCWGG 1 cut(s) 178
PspN4I GGNNCC 2 cut(s) 369, 395
PspPI GGNCC 3 cut(s) 116, 149, 600
PspXI VCTCGAGB 1 cut(s) 95
PsuI RGATCY 4 cut(s) 325, 367, 500, 523
PvuII CAGCTG 1 cut(s) 655
RsaI GTAC 3 cut(s) 23, 133, 542
RsaNI GTAC 3 cut(s) 22, 132, 541
SacI GAGCTC 1 cut(s) 96
SaqAI TTAA 1 cut(s) 348
SatI GCNGC 2 cut(s) 176, 386
Sau3AI GATC 4 cut(s) 325, 367, 500, 523
Sau96I GGNCC 3 cut(s) 116, 149, 600
SchI GAGTC 1 cut(s) 562
ScrFI CCNGG 2 cut(s) 119, 180
SduI GDGCHC 1 cut(s) 96
SfaNI GCATC 1 cut(s) 331
SfoI GGCGCC 1 cut(s) 395
Sfr274I CTCGAG 1 cut(s) 95
SinI GGWCC 2 cut(s) 149, 600
SlaI CTCGAG 1 cut(s) 95
SmlI CTYRAG 1 cut(s) 95
SmoI CTYRAG 1 cut(s) 95
Sse9I AATT 7 cut(s) 111, 297, 306, 345, 463, 487, 555
SsiI CCGC 2 cut(s) 385, 444
SspDI GGCGCC 1 cut(s) 393
SspMI CTAG 3 cut(s) 198, 221, 357
SstI GAGCTC 1 cut(s) 96
StyD4I CCNGG 2 cut(s) 117, 178
StyI CCWWGG 1 cut(s) 616
TaaI ACNGT 2 cut(s) 227, 293
TaqI TCGA 1 cut(s) 96
TaqII GACCGA 1 cut(s) 166
TasI AATT 7 cut(s) 111, 297, 306, 345, 463, 487, 555
TatI WGTACW 1 cut(s) 21
TauI GCSGC 1 cut(s) 388
TfiI GAWTC 1 cut(s) 533
Tru1I TTAA 1 cut(s) 348
Tru9I TTAA 1 cut(s) 348
TscAI CASTG 1 cut(s) 640
TseFI GTSAC 1 cut(s) 580
TseI GCWGC 1 cut(s) 175
Tsp45I GTSAC 1 cut(s) 580
TspDTI ATGAA 1 cut(s) 45
TspGWI ACGGA 1 cut(s) 545
TspRI CASTG 1 cut(s) 640
VpaK11BI GGWCC 2 cut(s) 149, 600
XapI RAATTY 1 cut(s) 487
XhoI CTCGAG 1 cut(s) 95
XmnI GAANNNNTTC 1 cut(s) 463
XspI CTAG 3 cut(s) 198, 221, 357
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.