Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0005406

Physical Location & Seq

Genomic Coordinates Reverse (-)

12660544 .. 12661987

Gene Structure 1444 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g09460.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

ATGCCGACCGTATCGGAGCTTTTCTACAACCGGAGGTCTCGCTACAACCGAGCCGCCACCGATCCAGGGTTCGACTCTCTCCCTCCTCCTCCGACCGTTGACCGAAGCCACAACCACAATCAAAGTCGCCGCCACCACAATTCTGACGGCTGCGATCCCCTCCTCCGCCGAACCCCGCCCCATTTCCGGCACCGTTCCTCCCTCCCGTTGCAGCAGCGGGCGCCGGTTGGGCTCGAGCAGGGCGGGACCCACCCGGGTTCTGGAAATGGGGTCGCCGGAAGCAGTGGCGGGTTGAGCGGGAACGAGAGGCTTCCCGGGTCTGTTTTGCTCGCCAGGGAAAGGCTGCTGGAGAGGCTGAGAGGGATGCCTCCTTCAGAAACCAGGCGGCATAGAGCATTGCATCTTTATGGTGGTGGGCTACTACATGATGATGACTTGAGTCCCCTTGTAAGGGATTCGGACGCTGAAATCTTGACAGGTCGTCCAGCCAGTGCCTACTCTTCGACTAACTTGGGCTCCCAAATTGAAAGCCTACATCTCTTGCAAGAATCGAACAAGAAGCCTCCAGGTCTTAGTCAGGAGGTCTTTGATTGTTTGAACCCCGAGATTTTCAGTAGCACAGAAATGGGTGTTGAAGGGTTGGAGTTAGGAGCTTCTCAAGATTGTAGTATCTGTTTGGAGAGTTTTATGGATGGCGACAAGCTTATATGCTTACCTTGTGAGCATAGATTCCATGCTGCCTGCCTGAGTCCCTGGGCTCATATTCGAGGGGACTGCCCGTACTGCCGGAAAGTTATAGTTGTAGATAGTCAAACTGCTAAAAGGAATACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001664 GO:0003674 GO:0003824 GO:0004842 GO:0005102 GO:0005109 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007267 GO:0008150 GO:0008152 GO:0008283 GO:0009056 GO:0009057 GO:0009966 GO:0009968 GO:0009987 GO:0010498 GO:0010646 GO:0010648 GO:0016020 GO:0016021 GO:0016055 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0022603 GO:0023051 GO:0023052 GO:0023057 GO:0030111 GO:0030163 GO:0030178 GO:0031224 GO:0031226 GO:0032446 GO:0032801 GO:0035567 GO:0036211 GO:0038018 GO:0043112 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044425 GO:0044459 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051603 GO:0051716 GO:0060070 GO:0060071 GO:0060828 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0071944 GO:0072089 GO:0090090 GO:0090175 GO:0140096 GO:0198738 GO:1901564 GO:1901565 GO:1901575 GO:1905114 GO:1905330 GO:2000026 GO:2000027 GO:2000050 GO:2000051

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

278

Amino Acids

30.44

Weight (kDa)

6.92

Isoelectric Point (pI)

74.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005406)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49850
fragaria_vesca	FvH4_2g04490 FvH4_2g04490
malus_domestica	MD05G1095900.v1.1 MD09G1148100.v1.1 MD10G1102100.v1.1
prunus_persica	Prupe.8G140300_v2.0.a1 Prupe.8G140300_v2.0.a1 Prupe.8G140300_v2.0.a1 Prupe.8G140300_v2.0.a1
pyrus_communis	pycom05g09460 pycom10g08780
rosa_chinensis	RchiOBHm_Chr6g0253981
rosa_laevigata	RLG00000014951
rosa_multiflora	Rmu_sc0001716.1_g000017
rosa_roxburghii	Rroxscaffold_7G00211330
rosa_rugosa	Rorug04G0080100 Rorug05G0548700
rosa_samantha	Rh2BG479300 Rh5DG329300 Rh6AG065200 Rh6AG082700 Rh6BG058200 Rh6CG058200 Rh6CG058300 Rh6DG055100 Rh6DG069100 Rh7CG154800
rosa_wichuraiana	Rw6G005740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	189, 220
AccBSI	CCGCTC	1 cut(s)	297
AciI	CCGC	9 cut(s)	54, 130, 166, 176, 217, 243, 288, 297, 385
AclWI	GGATC	2 cut(s)	56, 149
AcuI	CTGAAG	1 cut(s)	357
AcyI	GRCGYC	1 cut(s)	221
AfaI	GTAC	1 cut(s)	782
AfiI	CCNNNNNNNGG	6 cut(s)	66, 186, 260, 339, 450, 451
AgsI	TTSAA	3 cut(s)	527, 598, 635
AhdI	GACNNNNNGTC	1 cut(s)	480
AjnI	CCWGG	5 cut(s)	64, 332, 380, 565, 752
AluBI	AGCT	3 cut(s)	19, 653, 703
AluI	AGCT	3 cut(s)	19, 653, 703
Alw26I	GTCTC	1 cut(s)	42
AlwI	GGATC	2 cut(s)	56, 149
Ama87I	CYCGRG	4 cut(s)	233, 253, 314, 602
ApeKI	GCWGC	5 cut(s)	150, 211, 214, 343, 737
AspLEI	GCGC	1 cut(s)	223
AspS9I	GGNCC	1 cut(s)	246
AsuC2I	CCSGG	4 cut(s)	254, 255, 315, 316
AvaI	CYCGRG	4 cut(s)	233, 253, 314, 602
AvaII	GGWCC	1 cut(s)	246
BanI	GGYRCC	2 cut(s)	189, 220
BanII	GRGCYC	3 cut(s)	234, 518, 760
BbvI	GCAGC	5 cut(s)	137, 223, 226, 330, 724
BccI	CCATC	1 cut(s)	686
BceAI	ACGGC	1 cut(s)	163
BcgI	CGANNNNNNTGC	2 cut(s)	756, 790
BciT130I	CCWGG	5 cut(s)	66, 334, 382, 567, 754
BcnI	CCSGG	4 cut(s)	254, 255, 315, 316
BcoDI	GTCTC	1 cut(s)	42
BfoI	RGCGCY	1 cut(s)	224
BglI	GCCNNNNNGGC	1 cut(s)	229
BisI	GCNGC	8 cut(s)	54, 130, 151, 212, 215, 344, 386, 738
BlsI	GCNGC	8 cut(s)	55, 131, 152, 213, 216, 345, 387, 739
Bme1390I	CCNGG	9 cut(s)	66, 254, 255, 315, 316, 334, 382, 567, 754
Bme18I	GGWCC	1 cut(s)	246
BmeRI	GACNNNNNGTC	1 cut(s)	480
BmeT110I	CYCGRG	4 cut(s)	233, 253, 314, 602
BmgT120I	GGNCC	1 cut(s)	246
BmiI	GGNNCC	5 cut(s)	191, 222, 247, 248, 517
BmrFI	CCNGG	9 cut(s)	66, 254, 255, 315, 316, 334, 382, 567, 754
BmsI	GCATC	2 cut(s)	354, 409
BoxI	GACNNNNGTC	1 cut(s)	438
BpmI	CTGGAG	2 cut(s)	368, 549
BpuEI	CTTGAG	2 cut(s)	457, 642
BpuMI	CCSGG	4 cut(s)	254, 255, 315, 316
BsaHI	GRCGYC	1 cut(s)	221
BsaI	GGTCTC	1 cut(s)	42
BsaJI	CCNNGG	6 cut(s)	65, 253, 314, 333, 752, 753
BsaWI	WCCGGW	1 cut(s)	30
BsaXI	ACNNNNNCTCC	4 cut(s)	182, 212, 500, 530
Bsc4I	CCNNNNNNNGG	6 cut(s)	66, 186, 260, 339, 450, 451
Bse118I	RCCGGY	1 cut(s)	223
Bse1I	ACTGG	1 cut(s)	489
Bse3DI	GCAATG	1 cut(s)	395
BseBI	CCWGG	5 cut(s)	66, 334, 382, 567, 754
BseDI	CCNNGG	6 cut(s)	65, 253, 314, 333, 752, 753
BseGI	GGATG	2 cut(s)	369, 697
BseLI	CCNNNNNNNGG	6 cut(s)	66, 186, 260, 339, 450, 451
BseMI	GCAATG	1 cut(s)	395
BseMII	CTCAG	2 cut(s)	347, 737
BseNI	ACTGG	1 cut(s)	489
BseRI	GAGGAG	3 cut(s)	75, 78, 152
BseXI	GCAGC	5 cut(s)	137, 223, 226, 330, 724
Bsh1285I	CGRYCG	2 cut(s)	9, 96
BshNI	GGYRCC	2 cut(s)	189, 220
BsiEI	CGRYCG	2 cut(s)	9, 96
BsiHKCI	CYCGRG	4 cut(s)	233, 253, 314, 602
BsiSI	CCGG	7 cut(s)	31, 187, 224, 254, 276, 315, 787
BslFI	GGGAC	4 cut(s)	259, 426, 735, 785
BslI	CCNNNNNNNGG	6 cut(s)	66, 186, 260, 339, 450, 451
BsmAI	GTCTC	1 cut(s)	42
BsmFI	GGGAC	4 cut(s)	259, 426, 735, 785
Bso31I	GGTCTC	1 cut(s)	42
BsoBI	CYCGRG	4 cut(s)	233, 253, 314, 602
Bsp1286I	GDGCHC	3 cut(s)	234, 518, 760
Bsp143I	GATC	2 cut(s)	61, 154
BspACI	CCGC	9 cut(s)	54, 130, 166, 176, 217, 243, 288, 297, 385
BspCNI	CTCAG	2 cut(s)	348, 738
BspLI	GGNNCC	5 cut(s)	191, 222, 247, 248, 517
BspPI	GGATC	2 cut(s)	56, 149
BspT107I	GGYRCC	2 cut(s)	189, 220
BspTNI	GGTCTC	1 cut(s)	42
BsrBI	CCGCTC	1 cut(s)	297
BsrDI	GCAATG	1 cut(s)	395
BsrFI	RCCGGY	1 cut(s)	223
BsrI	ACTGG	1 cut(s)	489
BssAI	RCCGGY	1 cut(s)	223
BssECI	CCNNGG	6 cut(s)	65, 253, 314, 333, 752, 753
BssMI	GATC	2 cut(s)	61, 154
BssNI	GRCGYC	1 cut(s)	221
Bst2UI	CCWGG	5 cut(s)	66, 334, 382, 567, 754
Bst4CI	ACNGT	3 cut(s)	10, 97, 194
Bst6I	CTCTTC	1 cut(s)	505
BstACI	GRCGYC	1 cut(s)	221
BstC8I	GCNNGC	3 cut(s)	219, 330, 742
BstDEI	CTNAG	3 cut(s)	356, 572, 746
BstF5I	GGATG	2 cut(s)	369, 697
BstH2I	RGCGCY	1 cut(s)	224
BstHHI	GCGC	1 cut(s)	223
BstKTI	GATC	2 cut(s)	64, 157
BstMAI	GTCTC	1 cut(s)	42
BstMBI	GATC	2 cut(s)	61, 154
BstMCI	CGRYCG	2 cut(s)	9, 96
BstMWI	GCNNNNNNNGC	5 cut(s)	220, 229, 294, 352, 783
BstNI	CCWGG	5 cut(s)	66, 334, 382, 567, 754
BstPAI	GACNNNNGTC	1 cut(s)	438
BstSCI	CCNGG	9 cut(s)	64, 252, 253, 313, 314, 332, 380, 565, 752
BstV1I	GCAGC	5 cut(s)	137, 223, 226, 330, 724
BtsCI	GGATG	2 cut(s)	369, 697
BtsI	GCAGTG	1 cut(s)	289
BtsIMutI	CAGTG	2 cut(s)	289, 496
Cac8I	GCNNGC	3 cut(s)	219, 330, 742
CfoI	GCGC	1 cut(s)	223
Cfr10I	RCCGGY	1 cut(s)	223
Cfr13I	GGNCC	1 cut(s)	246
Cfr9I	CCCGGG	2 cut(s)	253, 314
CseI	GACGC	1 cut(s)	470
Csp6I	GTAC	1 cut(s)	781
CviAII	CATG	2 cut(s)	425, 734
CviQI	GTAC	1 cut(s)	781
DdeI	CTNAG	3 cut(s)	356, 572, 746
DinI	GGCGCC	1 cut(s)	222
DpnI	GATC	2 cut(s)	63, 156
DpnII	GATC	2 cut(s)	61, 154
DriI	GACNNNNNGTC	1 cut(s)	480
Eam1104I	CTCTTC	1 cut(s)	505
Eam1105I	GACNNNNNGTC	1 cut(s)	480
EarI	CTCTTC	1 cut(s)	505
EciI	GGCGGA	1 cut(s)	155
Eco24I	GRGCYC	3 cut(s)	234, 518, 760
Eco31I	GGTCTC	1 cut(s)	42
Eco47I	GGWCC	1 cut(s)	246
Eco57I	CTGAAG	1 cut(s)	357
Eco88I	CYCGRG	4 cut(s)	233, 253, 314, 602
EcoO109I	RGGNCCY	1 cut(s)	246
EcoRII	CCWGG	5 cut(s)	64, 332, 380, 565, 752
EcoT38I	GRGCYC	3 cut(s)	234, 518, 760
EgeI	GGCGCC	1 cut(s)	222
EheI	GGCGCC	1 cut(s)	222
FaeI	CATG	2 cut(s)	428, 737
FaqI	GGGAC	4 cut(s)	259, 426, 735, 785
FatI	CATG	2 cut(s)	424, 733
FauI	CCCGC	5 cut(s)	183, 210, 236, 281, 290
Fnu4HI	GCNGC	8 cut(s)	54, 130, 151, 212, 215, 344, 386, 738
FokI	GGATG	2 cut(s)	376, 704
FriOI	GRGCYC	3 cut(s)	234, 518, 760
Fsp4HI	GCNGC	8 cut(s)	54, 130, 151, 212, 215, 344, 386, 738
GlaI	GCGC	1 cut(s)	222
GluI	GCNGC	8 cut(s)	54, 130, 151, 212, 215, 344, 386, 738
GsuI	CTGGAG	2 cut(s)	368, 549
HaeII	RGCGCY	1 cut(s)	224
HapII	CCGG	7 cut(s)	31, 187, 224, 254, 276, 315, 787
HgaI	GACGC	1 cut(s)	470
HhaI	GCGC	1 cut(s)	223
Hin1I	GRCGYC	1 cut(s)	221
Hin1II	CATG	2 cut(s)	428, 737
Hin6I	GCGC	1 cut(s)	221
HinP1I	GCGC	1 cut(s)	221
HincII	GTYRAC	1 cut(s)	100
HindII	GTYRAC	1 cut(s)	100
HindIII	AAGCTT	1 cut(s)	701
HinfI	GANTC	6 cut(s)	74, 439, 455, 548, 729, 748
HpaII	CCGG	7 cut(s)	31, 187, 224, 254, 276, 315, 787
Hpy166II	GTNNAC	1 cut(s)	100
Hpy188I	TCNGA	5 cut(s)	16, 93, 145, 376, 460
Hpy188III	TCNNGA	4 cut(s)	261, 472, 578, 659
Hpy8I	GTNNAC	1 cut(s)	100
HpyAV	CCTTC	2 cut(s)	381, 629
HpyCH4III	ACNGT	3 cut(s)	10, 97, 194
HpyCH4V	TGCA	3 cut(s)	211, 400, 544
HpyF10VI	GCNNNNNNNGC	5 cut(s)	220, 229, 294, 352, 783
HpyF3I	CTNAG	3 cut(s)	356, 572, 746
Hsp92I	GRCGYC	1 cut(s)	221
Hsp92II	CATG	2 cut(s)	428, 737
HspAI	GCGC	1 cut(s)	221
KasI	GGCGCC	1 cut(s)	220
KflI	GGGWCCC	1 cut(s)	246
Kzo9I	GATC	2 cut(s)	61, 154
LmnI	GCTCC	3 cut(s)	16, 521, 650
Lsp1109I	GCAGC	5 cut(s)	137, 223, 226, 330, 724
LweI	GCATC	2 cut(s)	354, 409
MalI	GATC	2 cut(s)	63, 156
MbiI	CCGCTC	1 cut(s)	297
MboI	GATC	2 cut(s)	61, 154
MboII	GAAGA	1 cut(s)	492
MhlI	GDGCHC	3 cut(s)	234, 518, 760
MluCI	AATT	2 cut(s)	139, 522
Mly113I	GGCGCC	1 cut(s)	221
MlyI	GAGTC	3 cut(s)	68, 448, 757
MmeI	TCCRAC	2 cut(s)	116, 621
MslI	CAYNNNNRTG	3 cut(s)	405, 429, 623
MspA1I	CMGCKG	1 cut(s)	217
MspI	CCGG	7 cut(s)	31, 187, 224, 254, 276, 315, 787
MspR9I	CCNGG	9 cut(s)	66, 254, 255, 315, 316, 334, 382, 567, 754
MvaI	CCWGG	5 cut(s)	66, 334, 382, 567, 754
MwoI	GCNNNNNNNGC	5 cut(s)	220, 229, 294, 352, 783
NarI	GGCGCC	1 cut(s)	221
NciI	CCSGG	4 cut(s)	254, 255, 315, 316
NdeII	GATC	2 cut(s)	61, 154
NlaIII	CATG	2 cut(s)	428, 737
NlaIV	GGNNCC	5 cut(s)	191, 222, 247, 248, 517
PaeR7I	CTCGAG	1 cut(s)	233
PasI	CCCWGGG	1 cut(s)	753
PcsI	WCGNNNNNNNCGW	1 cut(s)	46
PfeI	GAWTC	3 cut(s)	455, 548, 729
PkrI	GCNGC	8 cut(s)	55, 131, 152, 213, 216, 345, 387, 739
PleI	GAGTC	3 cut(s)	68, 447, 756
PluTI	GGCGCC	1 cut(s)	224
PpsI	GAGTC	3 cut(s)	68, 447, 756
PpuMI	RGGWCCY	1 cut(s)	246
PshAI	GACNNNNGTC	1 cut(s)	438
Psp5II	RGGWCCY	1 cut(s)	246
Psp6I	CCWGG	5 cut(s)	64, 332, 380, 565, 752
PspGI	CCWGG	5 cut(s)	64, 332, 380, 565, 752
PspN4I	GGNNCC	5 cut(s)	191, 222, 247, 248, 517
PspPI	GGNCC	1 cut(s)	246
PspPPI	RGGWCCY	1 cut(s)	246
PspXI	VCTCGAGB	1 cut(s)	233
RsaI	GTAC	1 cut(s)	782
RsaNI	GTAC	1 cut(s)	781
RseI	CAYNNNNRTG	3 cut(s)	405, 429, 623
SatI	GCNGC	8 cut(s)	54, 130, 151, 212, 215, 344, 386, 738
Sau3AI	GATC	2 cut(s)	61, 154
Sau96I	GGNCC	1 cut(s)	246
SchI	GAGTC	3 cut(s)	68, 448, 757
ScrFI	CCNGG	9 cut(s)	66, 254, 255, 315, 316, 334, 382, 567, 754
SduI	GDGCHC	3 cut(s)	234, 518, 760
SetI	ASST	8 cut(s)	21, 38, 481, 571, 585, 655, 705, 718
SfaNI	GCATC	2 cut(s)	354, 409
SfoI	GGCGCC	1 cut(s)	222
Sfr274I	CTCGAG	1 cut(s)	233
SinI	GGWCC	1 cut(s)	246
SlaI	CTCGAG	1 cut(s)	233
SmaI	CCCGGG	2 cut(s)	255, 316
SmiMI	CAYNNNNRTG	3 cut(s)	405, 429, 623
SmlI	CTYRAG	3 cut(s)	233, 436, 657
SmoI	CTYRAG	3 cut(s)	233, 436, 657
Sse9I	AATT	2 cut(s)	139, 522
SsiI	CCGC	9 cut(s)	54, 130, 166, 176, 217, 243, 288, 297, 385
SspDI	GGCGCC	1 cut(s)	220
StyD4I	CCNGG	9 cut(s)	64, 252, 253, 313, 314, 332, 380, 565, 752
TaaI	ACNGT	3 cut(s)	10, 97, 194
TaqI	TCGA	5 cut(s)	72, 234, 503, 551, 766
TaqII	GACCGA	1 cut(s)	117
TasI	AATT	2 cut(s)	139, 522
TauI	GCSGC	3 cut(s)	56, 132, 388
TfiI	GAWTC	3 cut(s)	455, 548, 729
TscAI	CASTG	2 cut(s)	289, 496
TseI	GCWGC	5 cut(s)	150, 211, 214, 343, 737
TspMI	CCCGGG	2 cut(s)	253, 314
TspRI	CASTG	2 cut(s)	289, 496
VpaK11BI	GGWCC	1 cut(s)	246
XcmI	CCANNNNNNNNNTGG	1 cut(s)	257
XhoI	CTCGAG	1 cut(s)	233
XmaI	CCCGGG	2 cut(s)	253, 314

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.