Rh2BG479300
ERF Family

Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin Fzo YdjA family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0005406
Physical Location & Seq
Forward (+)
67630435 .. 67636257
5823 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG479300.1

Sequence Viewer

Length: 441 bp
ATGGGAAGCAATGGCCAACCTCCAATCCAAGTACATGATGAAGATGAGGAAGAAGACGAACAATCAAAGACCACCACCATTGCCGCCGTCGCAATCACCGAGCTCGAGCATGAAGCTGGAATCGGCCGGGAGCAATTTGGTATGGGTAATCGAGTTGGACCGAGAGTGAGCAGGAATGAGAGGCTGCCTGGTGCTGTTGTGTTTGCTAGGGAAAGGCTACTTCGGAAAACAGACGGTCAGCTAGATGGTATTGTGCAGGGCATTGAAAATATGGTTCGCTCCTACATTGAGAAGCCCAATAGTATAATTTTAGCAATTTCACCTGCTAATCAAGATCTTGTTACATCAGATGCAATTAAAATCTCTCGTGAAGTGGATCCAACAAAACGTCAAGGGCAGACAATCTTGAGGATCAATGATATCTTTTGCTATACTAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000266 GO:0000278 GO:0000280 GO:0000281 GO:0000902 GO:0000904 GO:0000910 GO:0000911 GO:0000919 GO:0003002 GO:0003006 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005856 GO:0005874 GO:0005886 GO:0005911 GO:0006810 GO:0006897 GO:0006898 GO:0006996 GO:0007005 GO:0007049 GO:0007275 GO:0007389 GO:0008017 GO:0008092 GO:0008150 GO:0009504 GO:0009506 GO:0009507 GO:0009524 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009832 GO:0009888 GO:0009920 GO:0009987 GO:0010015 GO:0010026 GO:0010051 GO:0010053 GO:0010054 GO:0010090 GO:0010091 GO:0010154 GO:0015630 GO:0015631 GO:0016020 GO:0016043 GO:0016192 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0019899 GO:0019900 GO:0019901 GO:0021700 GO:0022402 GO:0022414 GO:0022607 GO:0022622 GO:0030054 GO:0030154 GO:0030276 GO:0031090 GO:0031976 GO:0031984 GO:0032501 GO:0032502 GO:0032506 GO:0032878 GO:0032989 GO:0034357 GO:0042546 GO:0042651 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043424 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044434 GO:0044435 GO:0044436 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048285 GO:0048316 GO:0048364 GO:0048468 GO:0048469 GO:0048608 GO:0048731 GO:0048764 GO:0048765 GO:0048766 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051179 GO:0051234 GO:0051301 GO:0055035 GO:0055044 GO:0061458 GO:0061640 GO:0065007 GO:0071554 GO:0071669 GO:0071695 GO:0071840 GO:0071944 GO:0072583 GO:0090558 GO:0090626 GO:0090627 GO:0098588 GO:0098657 GO:0098805 GO:0099080 GO:0099081 GO:0099402 GO:0099512 GO:0099513 GO:0140014 GO:1902410 GO:1903047 GO:1905392 GO:2000114
KEGG Pathways
Metabolic & Signaling
ko04072 ko04144 ko04721 ko04961 ko05100 map04072 map04144 map04721 map04961 map05100
Pfam Domains
Protein Families
Dynamin_M Dynamin_N GED

Protein Analysis

146

Amino Acids

16.23

Weight (kDa)

5.11

Isoelectric Point (pI)

43.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dynamin_N PF00350 82 - 134 8.8e-09 Dynamin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 331
Acc36I ACCTGC 1 cut(s) 331
AciI CCGC 1 cut(s) 84
AclWI GGATC 3 cut(s) 371, 384, 419
AcoI YGGCCR 2 cut(s) 13, 124
AfaI GTAC 1 cut(s) 33
AgsI TTSAA 1 cut(s) 266
AjnI CCWGG 1 cut(s) 187
AluBI AGCT 3 cut(s) 103, 116, 241
AluI AGCT 3 cut(s) 103, 116, 241
Alw21I GWGCWC 1 cut(s) 105
AlwI GGATC 3 cut(s) 371, 384, 419
Ama87I CYCGRG 1 cut(s) 104
AoxI GGCC 2 cut(s) 13, 124
ApeKI GCWGC 1 cut(s) 184
AspS9I GGNCC 1 cut(s) 158
AsuC2I CCSGG 1 cut(s) 128
AsuHPI GGTGA 2 cut(s) 88, 312
AvaI CYCGRG 1 cut(s) 104
AvaII GGWCC 1 cut(s) 158
BalI TGGCCA 1 cut(s) 15
BamHI GGATCC 1 cut(s) 376
BanII GRGCYC 1 cut(s) 105
BauI CACGAG 1 cut(s) 366
BbsI GAAGAC 1 cut(s) 60
Bbv12I GWGCWC 1 cut(s) 105
BbvI GCAGC 1 cut(s) 171
BccI CCATC 1 cut(s) 239
BceAI ACGGC 1 cut(s) 71
BciT130I CCWGG 1 cut(s) 189
BcnI CCSGG 1 cut(s) 128
BfaI CTAG 3 cut(s) 207, 242, 435
BfuAI ACCTGC 1 cut(s) 331
BglII AGATCT 1 cut(s) 334
BisI GCNGC 2 cut(s) 84, 185
BlsI GCNGC 2 cut(s) 85, 186
Bme1390I CCNGG 2 cut(s) 128, 189
Bme18I GGWCC 1 cut(s) 158
BmeT110I CYCGRG 1 cut(s) 104
BmgT120I GGNCC 1 cut(s) 158
BmiI GGNNCC 1 cut(s) 378
BmrFI CCNGG 2 cut(s) 128, 189
BmsI GCATC 1 cut(s) 340
BpiI GAAGAC 1 cut(s) 60
BpuEI CTTGAG 1 cut(s) 427
BpuMI CCSGG 1 cut(s) 128
Bse3DI GCAATG 2 cut(s) 16, 78
BseBI CCWGG 1 cut(s) 189
BseMI GCAATG 2 cut(s) 16, 78
BseX3I CGGCCG 1 cut(s) 124
BseXI GCAGC 1 cut(s) 171
BsgI GTGCAG 1 cut(s) 275
Bsh1285I CGRYCG 1 cut(s) 127
BshFI GGCC 2 cut(s) 15, 126
BsiEI CGRYCG 1 cut(s) 127
BsiHKAI GWGCWC 1 cut(s) 105
BsiHKCI CYCGRG 1 cut(s) 104
BsiSI CCGG 1 cut(s) 127
BsnI GGCC 2 cut(s) 15, 126
BsoBI CYCGRG 1 cut(s) 104
Bsp1286I GDGCHC 1 cut(s) 105
Bsp143I GATC 3 cut(s) 334, 376, 411
BspACI CCGC 1 cut(s) 84
BspANI GGCC 2 cut(s) 15, 126
BspLI GGNNCC 1 cut(s) 378
BspMI ACCTGC 1 cut(s) 331
BspPI GGATC 3 cut(s) 371, 384, 419
BsrDI GCAATG 2 cut(s) 16, 78
BssMI GATC 3 cut(s) 334, 376, 411
BssSI CACGAG 1 cut(s) 366
Bst2BI CACGAG 1 cut(s) 366
Bst2UI CCWGG 1 cut(s) 189
Bst4CI ACNGT 1 cut(s) 236
BstKTI GATC 3 cut(s) 337, 379, 414
BstMBI GATC 3 cut(s) 334, 376, 411
BstMCI CGRYCG 1 cut(s) 127
BstMWI GCNNNNNNNGC 1 cut(s) 89
BstNI CCWGG 1 cut(s) 189
BstSCI CCNGG 2 cut(s) 126, 187
BstV1I GCAGC 1 cut(s) 171
BstV2I GAAGAC 1 cut(s) 60
BstX2I RGATCY 2 cut(s) 334, 376
BstYI RGATCY 2 cut(s) 334, 376
BstZI CGGCCG 1 cut(s) 124
BsuRI GGCC 2 cut(s) 15, 126
BveI ACCTGC 1 cut(s) 331
Cfr13I GGNCC 1 cut(s) 158
Csp6I GTAC 1 cut(s) 32
CspCI CAANNNNNGTGG 2 cut(s) 61, 96
CviAII CATG 2 cut(s) 35, 110
CviJI RGCY 8 cut(s) 15, 103, 116, 126, 184, 217, 241, 295
CviKI_1 RGCY 8 cut(s) 15, 103, 116, 126, 184, 217, 241, 295
CviQI GTAC 1 cut(s) 32
DpnI GATC 3 cut(s) 336, 378, 413
DpnII GATC 3 cut(s) 334, 376, 411
EaeI YGGCCR 2 cut(s) 13, 124
EagI CGGCCG 1 cut(s) 124
Ecl136II GAGCTC 1 cut(s) 103
EclXI CGGCCG 1 cut(s) 124
Eco24I GRGCYC 1 cut(s) 105
Eco32I GATATC 1 cut(s) 421
Eco47I GGWCC 1 cut(s) 158
Eco52I CGGCCG 1 cut(s) 124
Eco53kI GAGCTC 1 cut(s) 103
Eco88I CYCGRG 1 cut(s) 104
EcoICRI GAGCTC 1 cut(s) 103
EcoRII CCWGG 1 cut(s) 187
EcoRV GATATC 1 cut(s) 421
EcoT38I GRGCYC 1 cut(s) 105
FaeI CATG 2 cut(s) 38, 113
FaiI YATR 6 cut(s) 36, 111, 143, 272, 305, 432
FatI CATG 2 cut(s) 34, 109
Fnu4HI GCNGC 2 cut(s) 84, 185
FriOI GRGCYC 1 cut(s) 105
Fsp4HI GCNGC 2 cut(s) 84, 185
FspBI CTAG 3 cut(s) 207, 242, 435
GluI GCNGC 2 cut(s) 84, 185
HaeIII GGCC 2 cut(s) 15, 126
HapII CCGG 1 cut(s) 127
Hin1II CATG 2 cut(s) 38, 113
HinfI GANTC 1 cut(s) 120
HpaII CCGG 1 cut(s) 127
HphI GGTGA 2 cut(s) 88, 312
Hpy188I TCNGA 2 cut(s) 225, 349
Hpy188III TCNNGA 3 cut(s) 332, 368, 406
Hpy99I CGWCG 1 cut(s) 92
HpyCH4III ACNGT 1 cut(s) 236
HpyCH4IV ACGT 1 cut(s) 388
HpyCH4V TGCA 2 cut(s) 256, 353
HpyF10VI GCNNNNNNNGC 1 cut(s) 89
HpySE526I ACGT 1 cut(s) 388
Hsp92II CATG 2 cut(s) 38, 113
Kzo9I GATC 3 cut(s) 334, 376, 411
LmnI GCTCC 2 cut(s) 130, 284
LpnPI CCDG 7 cut(s) 102, 140, 157, 174, 201, 242, 336
Lsp1109I GCAGC 1 cut(s) 171
LweI GCATC 1 cut(s) 340
MaeI CTAG 3 cut(s) 207, 242, 435
MaeII ACGT 1 cut(s) 388
MaeIII GTNAC 1 cut(s) 340
MalI GATC 3 cut(s) 336, 378, 413
MboI GATC 3 cut(s) 334, 376, 411
MboII GAAGA 3 cut(s) 53, 62, 65
MflI RGATCY 2 cut(s) 334, 376
MhlI GDGCHC 1 cut(s) 105
MlsI TGGCCA 1 cut(s) 15
MluCI AATT 4 cut(s) 134, 306, 315, 354
MluNI TGGCCA 1 cut(s) 15
MmeI TCCRAC 2 cut(s) 136, 404
MnlI CCTC 4 cut(s) 30, 40, 174, 402
Mox20I TGGCCA 1 cut(s) 15
MscI TGGCCA 1 cut(s) 15
MseI TTAA 1 cut(s) 357
Msp20I TGGCCA 1 cut(s) 15
MspI CCGG 1 cut(s) 127
MspR9I CCNGG 2 cut(s) 128, 189
MvaI CCWGG 1 cut(s) 189
MwoI GCNNNNNNNGC 1 cut(s) 89
NciI CCSGG 1 cut(s) 128
NdeII GATC 3 cut(s) 334, 376, 411
NlaIII CATG 2 cut(s) 38, 113
NlaIV GGNNCC 1 cut(s) 378
PaeR7I CTCGAG 1 cut(s) 104
PaqCI CACCTGC 1 cut(s) 331
PcsI WCGNNNNNNNCGW 1 cut(s) 96
PfeI GAWTC 1 cut(s) 120
PkrI GCNGC 2 cut(s) 85, 186
Psp124BI GAGCTC 1 cut(s) 105
Psp6I CCWGG 1 cut(s) 187
PspGI CCWGG 1 cut(s) 187
PspN4I GGNNCC 1 cut(s) 378
PspPI GGNCC 1 cut(s) 158
PspXI VCTCGAGB 1 cut(s) 104
PsuI RGATCY 2 cut(s) 334, 376
RsaI GTAC 1 cut(s) 33
RsaNI GTAC 1 cut(s) 32
SacI GAGCTC 1 cut(s) 105
SaqAI TTAA 1 cut(s) 357
SatI GCNGC 2 cut(s) 84, 185
Sau3AI GATC 3 cut(s) 334, 376, 411
Sau96I GGNCC 1 cut(s) 158
ScrFI CCNGG 2 cut(s) 128, 189
SduI GDGCHC 1 cut(s) 105
SetI ASST 6 cut(s) 22, 105, 118, 243, 325, 391
SfaNI GCATC 1 cut(s) 340
Sfr274I CTCGAG 1 cut(s) 104
SinI GGWCC 1 cut(s) 158
SlaI CTCGAG 1 cut(s) 104
SmlI CTYRAG 2 cut(s) 104, 406
SmoI CTYRAG 2 cut(s) 104, 406
Sse9I AATT 4 cut(s) 134, 306, 315, 354
SsiI CCGC 1 cut(s) 84
SspMI CTAG 3 cut(s) 207, 242, 435
SstI GAGCTC 1 cut(s) 105
StyD4I CCNGG 2 cut(s) 126, 187
TaaI ACNGT 1 cut(s) 236
TaiI ACGT 1 cut(s) 391
TaqI TCGA 2 cut(s) 105, 151
TaqII GACCGA 1 cut(s) 175
TasI AATT 4 cut(s) 134, 306, 315, 354
TatI WGTACW 1 cut(s) 31
TauI GCSGC 1 cut(s) 86
TfiI GAWTC 1 cut(s) 120
Tru1I TTAA 1 cut(s) 357
Tru9I TTAA 1 cut(s) 357
TseI GCWGC 1 cut(s) 184
TspDTI ATGAA 2 cut(s) 54, 126
VpaK11BI GGWCC 1 cut(s) 158
XhoI CTCGAG 1 cut(s) 104
XspI CTAG 3 cut(s) 207, 242, 435
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.