Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0005406

Physical Location & Seq

Genomic Coordinates Forward (+)

11651964 .. 11652340

Gene Structure 377 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1148100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 285 bp

ATGAGTGCTTCAGAGGTTTTCTACGACCGGAGGTCTCGCTACAACAGCCGAATCTCCACCGATCTAGGGTTTGACTCCCTCCCTCCTCCTCCGACAGTTGCCCGAAGTCACAACCTTAATCATAGTCACCACCACCGCACCTACCTCCCGGAGCGGGCAGCTATTGGGCTCAAGCAGGGTGGGATCCACCAGGGTTCTAGAAATAGGGTCGCCGGAAGCAGTGGCACTTTGAGCGAGAGCGAGAGACTTCCGGGGTCTGTCTGCTCGCCAGGGAAAGGCTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001664 GO:0003674 GO:0003824 GO:0004842 GO:0005102 GO:0005109 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007267 GO:0008150 GO:0008152 GO:0008283 GO:0009056 GO:0009057 GO:0009966 GO:0009968 GO:0009987 GO:0010498 GO:0010646 GO:0010648 GO:0016020 GO:0016021 GO:0016055 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0022603 GO:0023051 GO:0023052 GO:0023057 GO:0030111 GO:0030163 GO:0030178 GO:0031224 GO:0031226 GO:0032446 GO:0032801 GO:0035567 GO:0036211 GO:0038018 GO:0043112 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044425 GO:0044459 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051603 GO:0051716 GO:0060070 GO:0060071 GO:0060828 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0071944 GO:0072089 GO:0090090 GO:0090175 GO:0140096 GO:0198738 GO:1901564 GO:1901565 GO:1901575 GO:1905114 GO:1905330 GO:2000026 GO:2000027 GO:2000050 GO:2000051

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

95

Amino Acids

10.2

Weight (kDa)

9.88

Isoelectric Point (pI)

77.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005406)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49850
fragaria_vesca	FvH4_2g04490 FvH4_2g04490
malus_domestica	MD05G1095900.v1.1 MD09G1148100.v1.1 MD10G1102100.v1.1
prunus_persica	Prupe.8G140300_v2.0.a1 Prupe.8G140300_v2.0.a1 Prupe.8G140300_v2.0.a1 Prupe.8G140300_v2.0.a1
pyrus_communis	pycom05g09460 pycom10g08780
rosa_chinensis	RchiOBHm_Chr6g0253981
rosa_laevigata	RLG00000014951
rosa_multiflora	Rmu_sc0001716.1_g000017
rosa_roxburghii	Rroxscaffold_7G00211330
rosa_rugosa	Rorug04G0080100 Rorug05G0548700
rosa_samantha	Rh2BG479300 Rh5DG329300 Rh6AG065200 Rh6AG082700 Rh6BG058200 Rh6CG058200 Rh6CG058300 Rh6DG055100 Rh6DG069100 Rh7CG154800
rosa_wichuraiana	Rw6G005740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	154
AciI	CCGC	2 cut(s)	136, 154
AclWI	GGATC	2 cut(s)	178, 191
AfiI	CCNNNNNNNGG	3 cut(s)	66, 154, 275
AhdI	GACNNNNNGTC	1 cut(s)	31
AjnI	CCWGG	2 cut(s)	189, 268
AluBI	AGCT	1 cut(s)	161
AluI	AGCT	1 cut(s)	161
Alw26I	GTCTC	2 cut(s)	39, 238
AlwI	GGATC	2 cut(s)	178, 191
ApeKI	GCWGC	2 cut(s)	158, 279
AsuC2I	CCSGG	2 cut(s)	149, 252
AsuHPI	GGTGA	1 cut(s)	119
BamHI	GGATCC	1 cut(s)	183
BanII	GRGCYC	1 cut(s)	171
BbvI	GCAGC	2 cut(s)	170, 266
BciT130I	CCWGG	2 cut(s)	191, 270
BcnI	CCSGG	2 cut(s)	149, 252
BcoDI	GTCTC	2 cut(s)	39, 238
BfaI	CTAG	2 cut(s)	65, 198
BisI	GCNGC	2 cut(s)	159, 280
BlsI	GCNGC	2 cut(s)	160, 281
Bme1390I	CCNGG	4 cut(s)	149, 191, 252, 270
BmeRI	GACNNNNNGTC	1 cut(s)	31
BmiI	GGNNCC	1 cut(s)	185
BmrFI	CCNGG	4 cut(s)	149, 191, 252, 270
BpuEI	CTTGAG	1 cut(s)	155
BpuMI	CCSGG	2 cut(s)	149, 252
BsaI	GGTCTC	1 cut(s)	39
BsaJI	CCNNGG	3 cut(s)	190, 251, 269
BsaWI	WCCGGW	1 cut(s)	27
Bsc4I	CCNNNNNNNGG	3 cut(s)	66, 154, 275
BseBI	CCWGG	2 cut(s)	191, 270
BseDI	CCNNGG	3 cut(s)	190, 251, 269
BseLI	CCNNNNNNNGG	3 cut(s)	66, 154, 275
BseRI	GAGGAG	2 cut(s)	75, 78
BseXI	GCAGC	2 cut(s)	170, 266
Bsh1285I	CGRYCG	1 cut(s)	28
BsiEI	CGRYCG	1 cut(s)	28
BsiSI	CCGG	4 cut(s)	28, 149, 213, 251
BslI	CCNNNNNNNGG	3 cut(s)	66, 154, 275
BsmAI	GTCTC	2 cut(s)	39, 238
Bso31I	GGTCTC	1 cut(s)	39
Bsp1286I	GDGCHC	1 cut(s)	171
Bsp143I	GATC	2 cut(s)	61, 183
BspACI	CCGC	2 cut(s)	136, 154
BspLI	GGNNCC	1 cut(s)	185
BspPI	GGATC	2 cut(s)	178, 191
BspTNI	GGTCTC	1 cut(s)	39
BsrBI	CCGCTC	1 cut(s)	154
BssECI	CCNNGG	3 cut(s)	190, 251, 269
BssMI	GATC	2 cut(s)	61, 183
Bst2UI	CCWGG	2 cut(s)	191, 270
Bst4CI	ACNGT	1 cut(s)	97
BstC8I	GCNNGC	2 cut(s)	156, 266
BstKTI	GATC	2 cut(s)	64, 186
BstMAI	GTCTC	2 cut(s)	39, 238
BstMBI	GATC	2 cut(s)	61, 183
BstMCI	CGRYCG	1 cut(s)	28
BstMWI	GCNNNNNNNGC	2 cut(s)	45, 231
BstNI	CCWGG	2 cut(s)	191, 270
BstSCI	CCNGG	4 cut(s)	147, 189, 250, 268
BstV1I	GCAGC	2 cut(s)	170, 266
BstX2I	RGATCY	1 cut(s)	183
BstYI	RGATCY	1 cut(s)	183
BtsI	GCAGTG	1 cut(s)	226
BtsIMutI	CAGTG	1 cut(s)	226
Cac8I	GCNNGC	2 cut(s)	156, 266
CspCI	CAANNNNNGTGG	2 cut(s)	160, 195
CviJI	RGCY	4 cut(s)	48, 161, 169, 279
CviKI_1	RGCY	4 cut(s)	48, 161, 169, 279
DpnI	GATC	2 cut(s)	63, 185
DpnII	GATC	2 cut(s)	61, 183
DriI	GACNNNNNGTC	1 cut(s)	31
Eam1105I	GACNNNNNGTC	1 cut(s)	31
Eco24I	GRGCYC	1 cut(s)	171
Eco31I	GGTCTC	1 cut(s)	39
EcoRII	CCWGG	2 cut(s)	189, 268
EcoT38I	GRGCYC	1 cut(s)	171
FaiI	YATR	1 cut(s)	123
FauI	CCCGC	1 cut(s)	147
Fnu4HI	GCNGC	2 cut(s)	159, 280
FriOI	GRGCYC	1 cut(s)	171
Fsp4HI	GCNGC	2 cut(s)	159, 280
FspBI	CTAG	2 cut(s)	65, 198
GluI	GCNGC	2 cut(s)	159, 280
HapII	CCGG	4 cut(s)	28, 149, 213, 251
HinfI	GANTC	2 cut(s)	51, 74
HpaII	CCGG	4 cut(s)	28, 149, 213, 251
HphI	GGTGA	1 cut(s)	119
Hpy188I	TCNGA	2 cut(s)	13, 93
Hpy188III	TCNNGA	1 cut(s)	198
HpyCH4III	ACNGT	1 cut(s)	97
HpyF10VI	GCNNNNNNNGC	2 cut(s)	45, 231
Kzo9I	GATC	2 cut(s)	61, 183
LmnI	GCTCC	1 cut(s)	151
LpnPI	CCDG	8 cut(s)	41, 161, 162, 176, 203, 226, 255, 264
Lsp1109I	GCAGC	2 cut(s)	170, 266
MaeI	CTAG	2 cut(s)	65, 198
MaeIII	GTNAC	2 cut(s)	107, 125
MalI	GATC	2 cut(s)	63, 185
MbiI	CCGCTC	1 cut(s)	154
MboI	GATC	2 cut(s)	61, 183
MflI	RGATCY	1 cut(s)	183
MhlI	GDGCHC	1 cut(s)	171
MlyI	GAGTC	1 cut(s)	68
MmeI	TCCRAC	1 cut(s)	116
MnlI	CCTC	7 cut(s)	7, 24, 89, 93, 96, 99, 155
MseI	TTAA	1 cut(s)	117
MspI	CCGG	4 cut(s)	28, 149, 213, 251
MspR9I	CCNGG	4 cut(s)	149, 191, 252, 270
MvaI	CCWGG	2 cut(s)	191, 270
MwoI	GCNNNNNNNGC	2 cut(s)	45, 231
NciI	CCSGG	2 cut(s)	149, 252
NdeII	GATC	2 cut(s)	61, 183
NlaIV	GGNNCC	1 cut(s)	185
NmuCI	GTSAC	2 cut(s)	107, 125
PfeI	GAWTC	1 cut(s)	51
PfoI	TCCNGGA	1 cut(s)	147
PkrI	GCNGC	2 cut(s)	160, 281
PleI	GAGTC	1 cut(s)	68
PpsI	GAGTC	1 cut(s)	68
Psp6I	CCWGG	2 cut(s)	189, 268
PspGI	CCWGG	2 cut(s)	189, 268
PspN4I	GGNNCC	1 cut(s)	185
PsuI	RGATCY	1 cut(s)	183
SaqAI	TTAA	1 cut(s)	117
SatI	GCNGC	2 cut(s)	159, 280
Sau3AI	GATC	2 cut(s)	61, 183
SchI	GAGTC	1 cut(s)	68
ScrFI	CCNGG	4 cut(s)	149, 191, 252, 270
SduI	GDGCHC	1 cut(s)	171
SetI	ASST	6 cut(s)	18, 35, 117, 143, 147, 163
SmlI	CTYRAG	1 cut(s)	170
SmoI	CTYRAG	1 cut(s)	170
SsiI	CCGC	2 cut(s)	136, 154
SspMI	CTAG	2 cut(s)	65, 198
StyD4I	CCNGG	4 cut(s)	147, 189, 250, 268
TaaI	ACNGT	1 cut(s)	97
TfiI	GAWTC	1 cut(s)	51
Tru1I	TTAA	1 cut(s)	117
Tru9I	TTAA	1 cut(s)	117
TscAI	CASTG	1 cut(s)	226
TseFI	GTSAC	2 cut(s)	107, 125
TseI	GCWGC	2 cut(s)	158, 279
Tsp45I	GTSAC	2 cut(s)	107, 125
TspRI	CASTG	1 cut(s)	226
XbaI	TCTAGA	1 cut(s)	197
XspI	CTAG	2 cut(s)	65, 198

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.