Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005406

Physical Location & Seq

Genomic Coordinates Reverse (-)

18454844 .. 18456619

Gene Structure 1776 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G49850.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGACGAGCGCATCGGAACTCTTCTCTACACGAAGATCACGTCCGGGTCGATCCGACCCGGCTTTAGAATCCGACACTTCTTCCTATCGACACCACTCACACCATCATCATCGCCGTCACGGCGTCCATCATCATAATCAGCGTCATGATTCCGACGGCTGTGATCCTCTCCGGCGACCCACTCCCCGTCTCCGACGCTTCTTTCACCATCCGATTCAGGAACGTAGTAGACCTATTCGTGATGTTCAAGGCACTAGTCAGTATTTAAATACGGATAGTACTGATACTGAAACTCAGAGTAGCAGCTTTGTTAACCTAAATGGATCCGAGAGGCTTCCTGGAGCTGTTCTGCTTGCAAGGGATAGACTTTTCGAAAGATTGAGAGGTGTTTCTTTGTCTAGTAACAGTCGAAGCAACAGAGTTTCATTGGATGATCAAAGGGAGTCTTCATTTCATTCTATAGATGGAGATCCAATTTTTCAACTAGCAGGGCTTCAAGTGACCTATGAATGCAACAAGAAACCACAAGGTCTTACTCAAGATGCTATTAACTGTTTACACCGGCAAACTTTTAGCTCAGCCGAGGTTAAATCCGAGATGAGAGATTGTAGCATATGTTTAGAGAGTTTCACTAAAGGTGACATGCTAATATCCTTACCCTGTACCCATAGTTTCCATTCTTCTTGCTTAAACCCTTGGCTTAGAGCTTGTGGAGATTGTCCTTGTTGCCGTAGAGCCATAGCAAAGGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001664 GO:0003674 GO:0003824 GO:0004842 GO:0005102 GO:0005109 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007267 GO:0008150 GO:0008152 GO:0008283 GO:0009056 GO:0009057 GO:0009966 GO:0009968 GO:0009987 GO:0010498 GO:0010646 GO:0010648 GO:0016020 GO:0016021 GO:0016055 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0022603 GO:0023051 GO:0023052 GO:0023057 GO:0030111 GO:0030163 GO:0030178 GO:0031224 GO:0031226 GO:0032446 GO:0032801 GO:0035567 GO:0036211 GO:0038018 GO:0043112 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044425 GO:0044459 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051603 GO:0051716 GO:0060070 GO:0060071 GO:0060828 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0071944 GO:0072089 GO:0090090 GO:0090175 GO:0140096 GO:0198738 GO:1901564 GO:1901565 GO:1901575 GO:1905114 GO:1905330 GO:2000026 GO:2000027 GO:2000050 GO:2000051

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

250

Amino Acids

28.45

Weight (kDa)

8.7

Isoelectric Point (pI)

63.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	202 - 244	1.9e-12	Ring finger domain
zf-RING_11	PF17123	202 - 230	1.8e-11	RING-like zinc finger
zf-C3HC4_2	PF13923	203 - 243	7.3e-07	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005406)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49850
fragaria_vesca	FvH4_2g04490 FvH4_2g04490
malus_domestica	MD05G1095900.v1.1 MD09G1148100.v1.1 MD10G1102100.v1.1
prunus_persica	Prupe.8G140300_v2.0.a1 Prupe.8G140300_v2.0.a1 Prupe.8G140300_v2.0.a1 Prupe.8G140300_v2.0.a1
pyrus_communis	pycom05g09460 pycom10g08780
rosa_chinensis	RchiOBHm_Chr6g0253981
rosa_laevigata	RLG00000014951
rosa_multiflora	Rmu_sc0001716.1_g000017
rosa_roxburghii	Rroxscaffold_7G00211330
rosa_rugosa	Rorug04G0080100 Rorug05G0548700
rosa_samantha	Rh2BG479300 Rh5DG329300 Rh6AG065200 Rh6AG082700 Rh6BG058200 Rh6CG058200 Rh6CG058300 Rh6DG055100 Rh6DG069100 Rh7CG154800
rosa_wichuraiana	Rw6G005740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	229
AclWI	GGATC	5 cut(s)	45, 158, 318, 331, 464
AcyI	GRCGYC	1 cut(s)	123
AfaI	GTAC	2 cut(s)	280, 664
AgsI	TTSAA	3 cut(s)	248, 482, 497
AhlI	ACTAGT	1 cut(s)	254
AjiI	CACGTC	1 cut(s)	41
AjnI	CCWGG	1 cut(s)	337
AluBI	AGCT	4 cut(s)	306, 344, 576, 707
AluI	AGCT	4 cut(s)	306, 344, 576, 707
Alw26I	GTCTC	1 cut(s)	194
AlwI	GGATC	5 cut(s)	45, 158, 318, 331, 464
ApeKI	GCWGC	1 cut(s)	303
ArsI	GACNNNNNNTTYG	2 cut(s)	25, 57
AspLEI	GCGC	1 cut(s)	11
AsuC2I	CCSGG	2 cut(s)	45, 59
AsuHPI	GGTGA	2 cut(s)	197, 650
AsuII	TTCGAA	1 cut(s)	372
BamHI	GGATCC	1 cut(s)	323
BbsI	GAAGAC	1 cut(s)	438
BbvI	GCAGC	1 cut(s)	315
BccI	CCATC	4 cut(s)	111, 135, 216, 458
BceAI	ACGGC	4 cut(s)	99, 136, 172, 714
BciT130I	CCWGG	1 cut(s)	339
BclI	TGATCA	1 cut(s)	433
BcnI	CCSGG	2 cut(s)	45, 59
BcoDI	GTCTC	1 cut(s)	194
BcuI	ACTAGT	1 cut(s)	254
BfaI	CTAG	3 cut(s)	255, 399, 485
BfmI	CTRYAG	1 cut(s)	459
BglI	GCCNNNNNGGC	1 cut(s)	120
BisI	GCNGC	1 cut(s)	304
BlpI	GCTNAGC	1 cut(s)	577
BlsI	GCNGC	1 cut(s)	305
BmcAI	AGTACT	1 cut(s)	280
Bme1390I	CCNGG	3 cut(s)	45, 59, 339
BmgBI	CACGTC	1 cut(s)	41
BmiI	GGNNCC	1 cut(s)	325
BmrFI	CCNGG	3 cut(s)	45, 59, 339
BmsI	GCATC	2 cut(s)	20, 532
BpiI	GAAGAC	1 cut(s)	438
BpmI	CTGGAG	1 cut(s)	360
Bpu1102I	GCTNAGC	1 cut(s)	577
Bpu14I	TTCGAA	1 cut(s)	372
BpuEI	CTTGAG	1 cut(s)	522
BpuMI	CCSGG	2 cut(s)	45, 59
BsaBI	GATNNNNATC	1 cut(s)	468
BsaHI	GRCGYC	1 cut(s)	123
BsaJI	CCNNGG	2 cut(s)	582, 695
Bse118I	RCCGGY	1 cut(s)	561
Bse8I	GATNNNNATC	1 cut(s)	468
BseBI	CCWGG	1 cut(s)	339
BseDI	CCNNGG	2 cut(s)	582, 695
BseGI	GGATG	2 cut(s)	208, 436
BseJI	GATNNNNATC	1 cut(s)	468
BseMII	CTCAG	2 cut(s)	308, 591
BseXI	GCAGC	1 cut(s)	315
BsiSI	CCGG	4 cut(s)	44, 59, 172, 562
BsmAI	GTCTC	1 cut(s)	194
BsmBI	CGTCTC	1 cut(s)	194
BsmI	GAATGC	1 cut(s)	515
Bsp119I	TTCGAA	1 cut(s)	372
Bsp143I	GATC	6 cut(s)	35, 50, 163, 323, 433, 469
Bsp1720I	GCTNAGC	1 cut(s)	577
BspCNI	CTCAG	2 cut(s)	307, 590
BspHI	TCATGA	1 cut(s)	145
BspLI	GGNNCC	1 cut(s)	325
BspPI	GGATC	5 cut(s)	45, 158, 318, 331, 464
BspT104I	TTCGAA	1 cut(s)	372
BsrFI	RCCGGY	1 cut(s)	561
BssAI	RCCGGY	1 cut(s)	561
BssECI	CCNNGG	2 cut(s)	582, 695
BssMI	GATC	6 cut(s)	35, 50, 163, 323, 433, 469
BssNI	GRCGYC	1 cut(s)	123
BssT1I	CCWWGG	1 cut(s)	695
Bst2UI	CCWGG	1 cut(s)	339
Bst4CI	ACNGT	2 cut(s)	407, 554
Bst6I	CTCTTC	1 cut(s)	26
BstACI	GRCGYC	1 cut(s)	123
BstBI	TTCGAA	1 cut(s)	372
BstC8I	GCNNGC	1 cut(s)	354
BstDEI	CTNAG	3 cut(s)	294, 577, 701
BstF5I	GGATG	2 cut(s)	208, 436
BstHHI	GCGC	1 cut(s)	11
BstKTI	GATC	6 cut(s)	38, 53, 166, 326, 436, 472
BstMAI	GTCTC	1 cut(s)	194
BstMBI	GATC	6 cut(s)	35, 50, 163, 323, 433, 469
BstMWI	GCNNNNNNNGC	1 cut(s)	120
BstNI	CCWGG	1 cut(s)	339
BstNSI	RCATGY	1 cut(s)	646
BstSCI	CCNGG	3 cut(s)	43, 57, 337
BstSFI	CTRYAG	1 cut(s)	459
BstV1I	GCAGC	1 cut(s)	315
BstV2I	GAAGAC	1 cut(s)	438
BstX2I	RGATCY	2 cut(s)	323, 469
BstYI	RGATCY	2 cut(s)	323, 469
BtgZI	GCGATG	1 cut(s)	95
BtrI	CACGTC	1 cut(s)	41
BtsCI	GGATG	2 cut(s)	208, 436
Cac8I	GCNNGC	1 cut(s)	354
CciI	TCATGA	1 cut(s)	145
CfoI	GCGC	1 cut(s)	11
Cfr10I	RCCGGY	1 cut(s)	561
CseI	GACGC	3 cut(s)	112, 131, 204
Csp6I	GTAC	2 cut(s)	279, 663
CviAII	CATG	2 cut(s)	146, 643
CviQI	GTAC	2 cut(s)	279, 663
DdeI	CTNAG	3 cut(s)	294, 577, 701
DpnI	GATC	6 cut(s)	37, 52, 165, 325, 435, 471
DpnII	GATC	6 cut(s)	35, 50, 163, 323, 433, 469
DraI	TTTAAA	1 cut(s)	267
Eam1104I	CTCTTC	1 cut(s)	26
EarI	CTCTTC	1 cut(s)	26
Eco130I	CCWWGG	1 cut(s)	695
EcoRII	CCWGG	1 cut(s)	337
EcoT14I	CCWWGG	1 cut(s)	695
ErhI	CCWWGG	1 cut(s)	695
Esp3I	CGTCTC	1 cut(s)	194
FaeI	CATG	2 cut(s)	149, 646
FaiI	YATR	9 cut(s)	135, 147, 461, 507, 614, 616, 644, 669, 740
FalI	AAGNNNNNCTT	2 cut(s)	430, 462
FatI	CATG	2 cut(s)	145, 642
FauNDI	CATATG	1 cut(s)	614
FbaI	TGATCA	1 cut(s)	433
FblI	GTMKAC	1 cut(s)	229
Fnu4HI	GCNGC	1 cut(s)	304
FokI	GGATG	2 cut(s)	195, 443
Fsp4HI	GCNGC	1 cut(s)	304
FspBI	CTAG	3 cut(s)	255, 399, 485
GlaI	GCGC	1 cut(s)	10
GluI	GCNGC	1 cut(s)	304
GsuI	CTGGAG	1 cut(s)	360
HapII	CCGG	4 cut(s)	44, 59, 172, 562
HgaI	GACGC	3 cut(s)	112, 131, 204
HhaI	GCGC	1 cut(s)	11
Hin1I	GRCGYC	1 cut(s)	123
Hin1II	CATG	2 cut(s)	149, 646
Hin6I	GCGC	1 cut(s)	9
HinP1I	GCGC	1 cut(s)	9
HincII	GTYRAC	1 cut(s)	313
HindII	GTYRAC	1 cut(s)	313
HinfI	GANTC	4 cut(s)	68, 149, 214, 443
HpaI	GTTAAC	1 cut(s)	313
HpaII	CCGG	4 cut(s)	44, 59, 172, 562
HphI	GGTGA	2 cut(s)	197, 650
Hpy166II	GTNNAC	3 cut(s)	230, 313, 557
Hpy188I	TCNGA	9 cut(s)	16, 55, 73, 154, 194, 213, 297, 328, 595
Hpy188III	TCNNGA	4 cut(s)	146, 218, 239, 539
Hpy8I	GTNNAC	3 cut(s)	230, 313, 557
Hpy99I	CGWCG	2 cut(s)	158, 198
HpyCH4III	ACNGT	2 cut(s)	407, 554
HpyCH4IV	ACGT	2 cut(s)	40, 223
HpyCH4V	TGCA	2 cut(s)	356, 513
HpyF10VI	GCNNNNNNNGC	1 cut(s)	120
HpyF3I	CTNAG	3 cut(s)	294, 577, 701
HpySE526I	ACGT	2 cut(s)	40, 223
Hsp92I	GRCGYC	1 cut(s)	123
Hsp92II	CATG	2 cut(s)	149, 646
HspAI	GCGC	1 cut(s)	9
Ksp22I	TGATCA	1 cut(s)	433
KspAI	GTTAAC	1 cut(s)	313
Kzo9I	GATC	6 cut(s)	35, 50, 163, 323, 433, 469
LmnI	GCTCC	1 cut(s)	341
LpnPI	CCDG	9 cut(s)	57, 72, 185, 203, 324, 351, 474, 575, 673
Lsp1109I	GCAGC	1 cut(s)	315
LweI	GCATC	2 cut(s)	20, 532
MaeI	CTAG	3 cut(s)	255, 399, 485
MaeII	ACGT	2 cut(s)	40, 223
MaeIII	GTNAC	4 cut(s)	116, 401, 499, 638
MalI	GATC	6 cut(s)	37, 52, 165, 325, 435, 471
MboI	GATC	6 cut(s)	35, 50, 163, 323, 433, 469
MboII	GAAGA	5 cut(s)	13, 45, 72, 438, 672
MflI	RGATCY	2 cut(s)	323, 469
MluCI	AATT	1 cut(s)	474
MlyI	GAGTC	1 cut(s)	452
MmeI	TCCRAC	4 cut(s)	78, 96, 177, 217
MnlI	CCTC	4 cut(s)	177, 324, 377, 577
MseI	TTAA	5 cut(s)	266, 312, 549, 588, 689
MspI	CCGG	4 cut(s)	44, 59, 172, 562
MspR9I	CCNGG	3 cut(s)	45, 59, 339
Mva1269I	GAATGC	1 cut(s)	515
MvaI	CCWGG	1 cut(s)	339
MwoI	GCNNNNNNNGC	1 cut(s)	120
NciI	CCSGG	2 cut(s)	45, 59
NdeI	CATATG	1 cut(s)	614
NdeII	GATC	6 cut(s)	35, 50, 163, 323, 433, 469
NlaIII	CATG	2 cut(s)	149, 646
NlaIV	GGNNCC	1 cut(s)	325
NmeAIII	GCCGAG	1 cut(s)	607
NmuCI	GTSAC	3 cut(s)	116, 499, 638
NspI	RCATGY	1 cut(s)	646
NspV	TTCGAA	1 cut(s)	372
PagI	TCATGA	1 cut(s)	145
PcsI	WCGNNNNNNNCGW	2 cut(s)	37, 46
PctI	GAATGC	1 cut(s)	515
PfeI	GAWTC	3 cut(s)	68, 149, 214
PfoI	TCCNGGA	1 cut(s)	337
PkrI	GCNGC	1 cut(s)	305
PleI	GAGTC	1 cut(s)	451
PpsI	GAGTC	1 cut(s)	451
Psp6I	CCWGG	1 cut(s)	337
PspGI	CCWGG	1 cut(s)	337
PspN4I	GGNNCC	1 cut(s)	325
PsuI	RGATCY	2 cut(s)	323, 469
RsaI	GTAC	2 cut(s)	280, 664
RsaNI	GTAC	2 cut(s)	279, 663
SaqAI	TTAA	5 cut(s)	266, 312, 549, 588, 689
SatI	GCNGC	1 cut(s)	304
Sau3AI	GATC	6 cut(s)	35, 50, 163, 323, 433, 469
ScaI	AGTACT	1 cut(s)	280
SchI	GAGTC	1 cut(s)	452
ScrFI	CCNGG	3 cut(s)	45, 59, 339
SfaNI	GCATC	2 cut(s)	20, 532
SfcI	CTRYAG	1 cut(s)	459
SfuI	TTCGAA	1 cut(s)	372
SmiI	ATTTAAAT	1 cut(s)	267
SmlI	CTYRAG	1 cut(s)	537
SmoI	CTYRAG	1 cut(s)	537
SpeI	ACTAGT	1 cut(s)	254
Sse9I	AATT	1 cut(s)	474
SspMI	CTAG	3 cut(s)	255, 399, 485
StyD4I	CCNGG	3 cut(s)	43, 57, 337
StyI	CCWWGG	1 cut(s)	695
SwaI	ATTTAAAT	1 cut(s)	267
TaaI	ACNGT	2 cut(s)	407, 554
TaiI	ACGT	2 cut(s)	43, 226
TaqI	TCGA	4 cut(s)	49, 88, 372, 409
TasI	AATT	1 cut(s)	474
TatI	WGTACW	1 cut(s)	278
TfiI	GAWTC	3 cut(s)	68, 149, 214
Tru1I	TTAA	5 cut(s)	266, 312, 549, 588, 689
Tru9I	TTAA	5 cut(s)	266, 312, 549, 588, 689
TseFI	GTSAC	3 cut(s)	116, 499, 638
TseI	GCWGC	1 cut(s)	303
Tsp45I	GTSAC	3 cut(s)	116, 499, 638
TspDTI	ATGAA	4 cut(s)	414, 438, 443, 522
TspGWI	ACGGA	1 cut(s)	287
XceI	RCATGY	1 cut(s)	646
XmiI	GTMKAC	1 cut(s)	229
XspI	CTAG	3 cut(s)	255, 399, 485
ZrmI	AGTACT	1 cut(s)	280

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.