Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0005406

Physical Location & Seq

Genomic Coordinates Forward (+)

3451211 .. 3453188

Gene Structure 1978 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g04490.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

ATGACGAGCGCATCGGAGCTTTTCTACAACCGCAGGTCTCGCTTCAACAGCCGAGCCACCCACAGCGATCTCGGCTTCGACTCCCTCTGTCCCCCTGACCGAATCTACAATCGCCGCCACCACAACCACCATGATTCCGACGCCTGCGATCTCCTCCTACACCGCCCCTCCTCCCGCCGCCACCGCATCTCCCTCACGGAGCGTGCGGCGGGGATTGGGTCGGAGCAGGGCGGACAATCGGGTACGGGTAATCGGGTTGGACCGAGAGTGAGCGGAAATGAGAGGTTGCCTGGTGCTGTTGTGCTCGCTAGGGAGAGGTTGCTTGAGAGGCTGAGAGGAATGCCTCCTTCCGAAACCAGGCGACACAGAGCATTGCATATGTACAGGAATGGTTCAATTGGTGATGATTTGGCTCCTCTTGATGAAAGGGATTGGAGTACTGACACCTGGCCAGGTCAGTCAGCCAGTGGTTCCCCGTCCAGTGACTTGAGTTCTCAAATTGCAAGAATGCATCTCTTGCAAGAAGCAAACAAGAAGCCCCCAGGTCTTACTGAAGATGTCCTTGAGTGCTTGGGTGTTGAGCTTTTCAGTGACACAGAATTGGTTGTTGATGGGTTGGTATCAGAAGTGTCAAGAGATTGTAGTATATGCCTGGAGAATTTCATGAATGGGGAAGAGCTTATATGCTTGCCTTGTGCACATAGGTTCCACACTACCTGCTTGGGACCCTGGGTTCAAATACGAGGAGACTGCCCGTATTGCCGGAGAGCTATAGTTGTAGATAGTGACATGTCCAAAAGGACTACGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001664 GO:0003674 GO:0003824 GO:0004842 GO:0005102 GO:0005109 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007267 GO:0008150 GO:0008152 GO:0008283 GO:0009056 GO:0009057 GO:0009966 GO:0009968 GO:0009987 GO:0010498 GO:0010646 GO:0010648 GO:0016020 GO:0016021 GO:0016055 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0022603 GO:0023051 GO:0023052 GO:0023057 GO:0030111 GO:0030163 GO:0030178 GO:0031224 GO:0031226 GO:0032446 GO:0032801 GO:0035567 GO:0036211 GO:0038018 GO:0043112 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044425 GO:0044459 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051603 GO:0051716 GO:0060070 GO:0060071 GO:0060828 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0071944 GO:0072089 GO:0090090 GO:0090175 GO:0140096 GO:0198738 GO:1901564 GO:1901565 GO:1901575 GO:1905114 GO:1905330 GO:2000026 GO:2000027 GO:2000050 GO:2000051

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

270

Amino Acids

30.06

Weight (kDa)

6.63

Isoelectric Point (pI)

63.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	213 - 255	1.9e-13	Ring finger domain
zf-RING_11	PF17123	213 - 241	6.4e-11	RING-like zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005406)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49850
fragaria_vesca	FvH4_2g04490 FvH4_2g04490
malus_domestica	MD05G1095900.v1.1 MD09G1148100.v1.1 MD10G1102100.v1.1
prunus_persica	Prupe.8G140300_v2.0.a1 Prupe.8G140300_v2.0.a1 Prupe.8G140300_v2.0.a1 Prupe.8G140300_v2.0.a1
pyrus_communis	pycom05g09460 pycom10g08780
rosa_chinensis	RchiOBHm_Chr6g0253981
rosa_laevigata	RLG00000014951
rosa_multiflora	Rmu_sc0001716.1_g000017
rosa_roxburghii	Rroxscaffold_7G00211330
rosa_rugosa	Rorug04G0080100 Rorug05G0548700
rosa_samantha	Rh2BG479300 Rh5DG329300 Rh6AG065200 Rh6AG082700 Rh6BG058200 Rh6CG058200 Rh6CG058300 Rh6DG055100 Rh6DG069100 Rh7CG154800
rosa_wichuraiana	Rw6G005740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	24, 725
AccBSI	CCGCTC	1 cut(s)	273
AcoI	YGGCCR	1 cut(s)	449
AcsI	RAATTY	1 cut(s)	658
AcuI	CTGAAG	1 cut(s)	573
AcyI	GRCGYC	1 cut(s)	141
AfaI	GTAC	3 cut(s)	244, 383, 439
AfiI	CCNNNNNNNGG	1 cut(s)	357
AflIII	ACRYGT	1 cut(s)	789
AgsI	TTSAA	3 cut(s)	46, 396, 737
AjnI	CCWGG	7 cut(s)	289, 356, 446, 451, 541, 651, 728
AloI	GAACNNNNNNTCC	2 cut(s)	717, 749
AluBI	AGCT	4 cut(s)	19, 583, 679, 770
AluI	AGCT	4 cut(s)	19, 583, 679, 770
Alw21I	GWGCWC	2 cut(s)	306, 700
Alw26I	GTCTC	2 cut(s)	42, 741
Alw44I	GTGCAC	1 cut(s)	696
AoxI	GGCC	1 cut(s)	449
ApaLI	GTGCAC	1 cut(s)	696
ApoI	RAATTY	1 cut(s)	658
AspLEI	GCGC	1 cut(s)	11
AspS9I	GGNCC	2 cut(s)	260, 725
AsuHPI	GGTGA	1 cut(s)	413
AvaII	GGWCC	2 cut(s)	260, 725
BaeGI	GKGCMC	1 cut(s)	700
BalI	TGGCCA	1 cut(s)	451
Bbv12I	GWGCWC	2 cut(s)	306, 700
BccI	CCATC	1 cut(s)	605
BcgI	CGANNNNNNTGC	2 cut(s)	732, 766
BciT130I	CCWGG	7 cut(s)	291, 358, 448, 453, 543, 653, 730
BcoDI	GTCTC	2 cut(s)	42, 741
BfaI	CTAG	1 cut(s)	309
BfmI	CTRYAG	1 cut(s)	771
BfuAI	ACCTGC	2 cut(s)	24, 725
BisI	GCNGC	3 cut(s)	115, 178, 207
BlsI	GCNGC	3 cut(s)	116, 179, 208
BmcAI	AGTACT	1 cut(s)	439
Bme1390I	CCNGG	7 cut(s)	291, 358, 448, 453, 543, 653, 730
Bme18I	GGWCC	2 cut(s)	260, 725
BmgT120I	GGNCC	2 cut(s)	260, 725
BmiI	GGNNCC	5 cut(s)	414, 472, 707, 726, 727
BmrFI	CCNGG	7 cut(s)	291, 358, 448, 453, 543, 653, 730
BmsI	GCATC	3 cut(s)	20, 195, 520
BpmI	CTGGAG	1 cut(s)	674
BpuEI	CTTGAG	3 cut(s)	344, 508, 584
BsaAI	YACGTR	1 cut(s)	807
BsaHI	GRCGYC	1 cut(s)	141
BsaI	GGTCTC	1 cut(s)	42
BsaJI	CCNNGG	3 cut(s)	541, 728, 729
BsaXI	ACNNNNNCTCC	4 cut(s)	152, 173, 182, 203
Bsc4I	CCNNNNNNNGG	1 cut(s)	357
Bse1I	ACTGG	2 cut(s)	465, 480
Bse3DI	GCAATG	1 cut(s)	371
BseBI	CCWGG	7 cut(s)	291, 358, 448, 453, 543, 653, 730
BseDI	CCNNGG	3 cut(s)	541, 728, 729
BseLI	CCNNNNNNNGG	1 cut(s)	357
BseMI	GCAATG	1 cut(s)	371
BseMII	CTCAG	1 cut(s)	323
BseNI	ACTGG	2 cut(s)	465, 480
BseRI	GAGGAG	4 cut(s)	143, 160, 405, 759
BseSI	GKGCMC	1 cut(s)	700
BshFI	GGCC	1 cut(s)	451
BsiHKAI	GWGCWC	2 cut(s)	306, 700
BsiSI	CCGG	1 cut(s)	763
BslFI	GGGAC	2 cut(s)	75, 738
BslI	CCNNNNNNNGG	1 cut(s)	357
BsmAI	GTCTC	2 cut(s)	42, 741
BsmFI	GGGAC	2 cut(s)	75, 738
BsmI	GAATGC	2 cut(s)	345, 513
BsnI	GGCC	1 cut(s)	451
Bso31I	GGTCTC	1 cut(s)	42
Bsp1286I	GDGCHC	2 cut(s)	306, 700
Bsp1407I	TGTACA	1 cut(s)	381
Bsp143I	GATC	2 cut(s)	67, 148
BspANI	GGCC	1 cut(s)	451
BspCNI	CTCAG	1 cut(s)	324
BspHI	TCATGA	1 cut(s)	663
BspLI	GGNNCC	5 cut(s)	414, 472, 707, 726, 727
BspMI	ACCTGC	2 cut(s)	24, 725
BspQI	GCTCTTC	1 cut(s)	669
BspTNI	GGTCTC	1 cut(s)	42
BsrBI	CCGCTC	1 cut(s)	273
BsrDI	GCAATG	1 cut(s)	371
BsrGI	TGTACA	1 cut(s)	381
BsrI	ACTGG	2 cut(s)	465, 480
BssECI	CCNNGG	3 cut(s)	541, 728, 729
BssMI	GATC	2 cut(s)	67, 148
BssNI	GRCGYC	1 cut(s)	141
Bst2UI	CCWGG	7 cut(s)	291, 358, 448, 453, 543, 653, 730
Bst6I	CTCTTC	1 cut(s)	669
BstACI	GRCGYC	1 cut(s)	141
BstAPI	GCANNNNNTGC	1 cut(s)	517
BstAUI	TGTACA	1 cut(s)	381
BstBAI	YACGTR	1 cut(s)	807
BstC8I	GCNNGC	4 cut(s)	145, 204, 306, 689
BstDEI	CTNAG	1 cut(s)	332
BstHHI	GCGC	1 cut(s)	11
BstKTI	GATC	2 cut(s)	70, 151
BstMAI	GTCTC	2 cut(s)	42, 741
BstMBI	GATC	2 cut(s)	67, 148
BstMWI	GCNNNNNNNGC	7 cut(s)	39, 48, 72, 183, 328, 517, 759
BstNI	CCWGG	7 cut(s)	291, 358, 448, 453, 543, 653, 730
BstNSI	RCATGY	1 cut(s)	793
BstSCI	CCNGG	7 cut(s)	289, 356, 446, 451, 541, 651, 728
BstSFI	CTRYAG	1 cut(s)	771
BstSLI	GKGCMC	1 cut(s)	700
BstSNI	TACGTA	1 cut(s)	807
BsuRI	GGCC	1 cut(s)	451
BtsIMutI	CAGTG	3 cut(s)	472, 487, 595
BveI	ACCTGC	2 cut(s)	24, 725
Cac8I	GCNNGC	4 cut(s)	145, 204, 306, 689
CciI	TCATGA	1 cut(s)	663
CfoI	GCGC	1 cut(s)	11
Cfr13I	GGNCC	2 cut(s)	260, 725
CseI	GACGC	1 cut(s)	149
Csp6I	GTAC	3 cut(s)	243, 382, 438
CviAII	CATG	3 cut(s)	131, 664, 790
CviQI	GTAC	3 cut(s)	243, 382, 438
DdeI	CTNAG	1 cut(s)	332
DpnI	GATC	2 cut(s)	69, 150
DpnII	GATC	2 cut(s)	67, 148
EaeI	YGGCCR	1 cut(s)	449
Eam1104I	CTCTTC	1 cut(s)	669
EarI	CTCTTC	1 cut(s)	669
EciI	GGCGGA	1 cut(s)	246
Eco105I	TACGTA	1 cut(s)	807
Eco31I	GGTCTC	1 cut(s)	42
Eco47I	GGWCC	2 cut(s)	260, 725
Eco57I	CTGAAG	1 cut(s)	573
EcoO109I	RGGNCCY	1 cut(s)	725
EcoRII	CCWGG	7 cut(s)	289, 356, 446, 451, 541, 651, 728
EcoT22I	ATGCAT	1 cut(s)	513
FaeI	CATG	3 cut(s)	134, 667, 793
FalI	AAGNNNNNCTT	2 cut(s)	546, 578
FaqI	GGGAC	2 cut(s)	75, 738
FatI	CATG	3 cut(s)	130, 663, 789
FauI	CCCGC	2 cut(s)	182, 202
FauNDI	CATATG	1 cut(s)	378
Fnu4HI	GCNGC	3 cut(s)	115, 178, 207
Fsp4HI	GCNGC	3 cut(s)	115, 178, 207
FspBI	CTAG	1 cut(s)	309
GlaI	GCGC	1 cut(s)	10
GluI	GCNGC	3 cut(s)	115, 178, 207
GsuI	CTGGAG	1 cut(s)	674
HaeIII	GGCC	1 cut(s)	451
HapII	CCGG	1 cut(s)	763
HgaI	GACGC	1 cut(s)	149
HhaI	GCGC	1 cut(s)	11
Hin1I	GRCGYC	1 cut(s)	141
Hin1II	CATG	3 cut(s)	134, 667, 793
Hin6I	GCGC	1 cut(s)	9
HinP1I	GCGC	1 cut(s)	9
HinfI	GANTC	3 cut(s)	80, 102, 134
HpaII	CCGG	1 cut(s)	763
HphI	GGTGA	1 cut(s)	413
Hpy166II	GTNNAC	1 cut(s)	698
Hpy188I	TCNGA	5 cut(s)	16, 139, 223, 352, 625
Hpy188III	TCNNGA	3 cut(s)	419, 633, 664
Hpy8I	GTNNAC	1 cut(s)	698
Hpy99I	CGWCG	1 cut(s)	143
HpyAV	CCTTC	1 cut(s)	357
HpyCH4IV	ACGT	1 cut(s)	806
HpyCH4V	TGCA	5 cut(s)	376, 503, 511, 520, 698
HpyF10VI	GCNNNNNNNGC	7 cut(s)	39, 48, 72, 183, 328, 517, 759
HpyF3I	CTNAG	1 cut(s)	332
HpySE526I	ACGT	1 cut(s)	806
Hsp92I	GRCGYC	1 cut(s)	141
Hsp92II	CATG	3 cut(s)	134, 667, 793
HspAI	GCGC	1 cut(s)	9
KflI	GGGWCCC	1 cut(s)	725
Kzo9I	GATC	2 cut(s)	67, 148
LguI	GCTCTTC	1 cut(s)	669
LmnI	GCTCC	4 cut(s)	16, 199, 223, 418
LweI	GCATC	3 cut(s)	20, 195, 520
MaeI	CTAG	1 cut(s)	309
MaeII	ACGT	1 cut(s)	806
MaeIII	GTNAC	3 cut(s)	482, 590, 785
MalI	GATC	2 cut(s)	69, 150
MbiI	CCGCTC	1 cut(s)	273
MboI	GATC	2 cut(s)	67, 148
MboII	GAAGA	2 cut(s)	566, 686
MfeI	CAATTG	1 cut(s)	396
MhlI	GDGCHC	2 cut(s)	306, 700
MlsI	TGGCCA	1 cut(s)	451
MluCI	AATT	4 cut(s)	396, 498, 599, 658
MluNI	TGGCCA	1 cut(s)	451
MlyI	GAGTC	1 cut(s)	74
MmeI	TCCRAC	3 cut(s)	162, 201, 238
Mox20I	TGGCCA	1 cut(s)	451
Mph1103I	ATGCAT	1 cut(s)	513
MscI	TGGCCA	1 cut(s)	451
Msp20I	TGGCCA	1 cut(s)	451
MspI	CCGG	1 cut(s)	763
MspR9I	CCNGG	7 cut(s)	291, 358, 448, 453, 543, 653, 730
MunI	CAATTG	1 cut(s)	396
Mva1269I	GAATGC	2 cut(s)	345, 513
MvaI	CCWGG	7 cut(s)	291, 358, 448, 453, 543, 653, 730
MwoI	GCNNNNNNNGC	7 cut(s)	39, 48, 72, 183, 328, 517, 759
NdeI	CATATG	1 cut(s)	378
NdeII	GATC	2 cut(s)	67, 148
NlaIII	CATG	3 cut(s)	134, 667, 793
NlaIV	GGNNCC	5 cut(s)	414, 472, 707, 726, 727
NmeAIII	GCCGAG	2 cut(s)	51, 77
NmuCI	GTSAC	3 cut(s)	482, 590, 785
NsiI	ATGCAT	1 cut(s)	513
NspI	RCATGY	1 cut(s)	793
PagI	TCATGA	1 cut(s)	663
PasI	CCCWGGG	1 cut(s)	729
PciI	ACATGT	1 cut(s)	789
PciSI	GCTCTTC	1 cut(s)	669
PctI	GAATGC	2 cut(s)	345, 513
PfeI	GAWTC	2 cut(s)	102, 134
PkrI	GCNGC	3 cut(s)	116, 179, 208
PleI	GAGTC	1 cut(s)	74
PpsI	GAGTC	1 cut(s)	74
Ppu21I	YACGTR	1 cut(s)	807
PpuMI	RGGWCCY	1 cut(s)	725
PscI	ACATGT	1 cut(s)	789
Psp5II	RGGWCCY	1 cut(s)	725
Psp6I	CCWGG	7 cut(s)	289, 356, 446, 451, 541, 651, 728
PspGI	CCWGG	7 cut(s)	289, 356, 446, 451, 541, 651, 728
PspN4I	GGNNCC	5 cut(s)	414, 472, 707, 726, 727
PspPI	GGNCC	2 cut(s)	260, 725
PspPPI	RGGWCCY	1 cut(s)	725
RsaI	GTAC	3 cut(s)	244, 383, 439
RsaNI	GTAC	3 cut(s)	243, 382, 438
SapI	GCTCTTC	1 cut(s)	669
SatI	GCNGC	3 cut(s)	115, 178, 207
Sau3AI	GATC	2 cut(s)	67, 148
Sau96I	GGNCC	2 cut(s)	260, 725
ScaI	AGTACT	1 cut(s)	439
SchI	GAGTC	1 cut(s)	74
ScrFI	CCNGG	7 cut(s)	291, 358, 448, 453, 543, 653, 730
SduI	GDGCHC	2 cut(s)	306, 700
SfaNI	GCATC	3 cut(s)	20, 195, 520
SfcI	CTRYAG	1 cut(s)	771
SinI	GGWCC	2 cut(s)	260, 725
SmlI	CTYRAG	3 cut(s)	323, 487, 563
SmoI	CTYRAG	3 cut(s)	323, 487, 563
SnaBI	TACGTA	1 cut(s)	807
Sse9I	AATT	4 cut(s)	396, 498, 599, 658
SspMI	CTAG	1 cut(s)	309
StyD4I	CCNGG	7 cut(s)	289, 356, 446, 451, 541, 651, 728
TaiI	ACGT	1 cut(s)	809
TaqI	TCGA	1 cut(s)	78
TaqII	GACCGA	2 cut(s)	114, 277
TasI	AATT	4 cut(s)	396, 498, 599, 658
TatI	WGTACW	2 cut(s)	381, 437
TauI	GCSGC	3 cut(s)	117, 180, 209
TfiI	GAWTC	2 cut(s)	102, 134
TscAI	CASTG	3 cut(s)	472, 487, 595
TseFI	GTSAC	3 cut(s)	482, 590, 785
Tsp45I	GTSAC	3 cut(s)	482, 590, 785
TspDTI	ATGAA	3 cut(s)	438, 652, 680
TspGWI	ACGGA	1 cut(s)	212
TspRI	CASTG	3 cut(s)	472, 487, 595
VneI	GTGCAC	1 cut(s)	696
VpaK11BI	GGWCC	2 cut(s)	260, 725
XapI	RAATTY	1 cut(s)	658
XceI	RCATGY	1 cut(s)	793
XspI	CTAG	1 cut(s)	309
ZrmI	AGTACT	1 cut(s)	439
Zsp2I	ATGCAT	1 cut(s)	513

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.