Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0005406

Physical Location & Seq

Genomic Coordinates Reverse (-)

11580058 .. 11581497

Gene Structure 1440 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g08780.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ATGACGAGCGCTTCGGAGCTTTTCTACAACCGGAGGTCTCGCTACAACAGCCGAACCGCCACCGATCTAGGGTTCGACTCCCTCCCTCCTCCTCCGACCGTTGACCGAAGTCACAACCACAATCACAGTCGCCGCCACCACAATTCCGACGGCTGCGATCCCCTGCTCCGCCGAACCCCGCGCCATTTCCGCCACCGCGCCTCCCTCCCGGATCGGGCGGCGGTTGGGCTCGAGCAGGGTGGGACCCACCAGGGTTCTGGAAATGGGGTCGCCGGAAGCAGTGCTGGTTTGAGCGGGAACGAGAGGCTTCCCGGGTCTGTTTTGCTCGCCAGGGAAAGGCTGCTGGAGAGGCTGAGAGGGATGCCTCCTTCAGAAACCAGGCGGCATAGAGCATTGCATCTTTACGGAGGTGTGCTACTGCATGTTGATGACTTGAGTCCCCTTGTAAGGGATTGGGACGCTGAAATCTTGACAAGTCAGCCAGCCACTGCCTACTCTTCGACTAACTTGGGCTCCCAAATTGAAAGGCTACATCTCTTGCAAGAAGCGAACAAGAAGCCTCCAGGTCTTAGTCAAGAGGTTCTTGATTGTTTGAGCACTGAGATTTTCAGCAGCGCAGAAGTGGGTGTTGACGGCTTGGTGTTAAGGGCTTCCGGAGATTGTAGTATTTGCCTGGAGAGTTTTACCGATGGAGATAAGCTTATTTGCTTGCCTTGTGAACATAGATTCCATGCTGCCTGCTTGAGTCCCTGGGCTCTTATTCGAGGAGACTGCCCATACTGCCGGAGAGTTATAGTTGTAGATGGTCAAAATGCTAAAAGGACTACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001664 GO:0003674 GO:0003824 GO:0004842 GO:0005102 GO:0005109 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007267 GO:0008150 GO:0008152 GO:0008283 GO:0009056 GO:0009057 GO:0009966 GO:0009968 GO:0009987 GO:0010498 GO:0010646 GO:0010648 GO:0016020 GO:0016021 GO:0016055 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0022603 GO:0023051 GO:0023052 GO:0023057 GO:0030111 GO:0030163 GO:0030178 GO:0031224 GO:0031226 GO:0032446 GO:0032801 GO:0035567 GO:0036211 GO:0038018 GO:0043112 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044425 GO:0044459 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051603 GO:0051716 GO:0060070 GO:0060071 GO:0060828 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0071944 GO:0072089 GO:0090090 GO:0090175 GO:0140096 GO:0198738 GO:1901564 GO:1901565 GO:1901575 GO:1905114 GO:1905330 GO:2000026 GO:2000027 GO:2000050 GO:2000051

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

277

Amino Acids

30.35

Weight (kDa)

8.12

Isoelectric Point (pI)

61.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005406)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49850
fragaria_vesca	FvH4_2g04490 FvH4_2g04490
malus_domestica	MD05G1095900.v1.1 MD09G1148100.v1.1 MD10G1102100.v1.1
prunus_persica	Prupe.8G140300_v2.0.a1 Prupe.8G140300_v2.0.a1 Prupe.8G140300_v2.0.a1 Prupe.8G140300_v2.0.a1
pyrus_communis	pycom05g09460 pycom10g08780
rosa_chinensis	RchiOBHm_Chr6g0253981
rosa_laevigata	RLG00000014951
rosa_multiflora	Rmu_sc0001716.1_g000017
rosa_roxburghii	Rroxscaffold_7G00211330
rosa_rugosa	Rorug04G0080100 Rorug05G0548700
rosa_samantha	Rh2BG479300 Rh5DG329300 Rh6AG065200 Rh6AG082700 Rh6BG058200 Rh6CG058200 Rh6CG058300 Rh6DG055100 Rh6DG069100 Rh7CG154800
rosa_wichuraiana	Rw6G005740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	294
AccII	CGCG	2 cut(s)	181, 198
AccIII	TCCGGA	1 cut(s)	653
AclWI	GGATC	2 cut(s)	152, 219
AcuI	CTGAAG	1 cut(s)	354
AfeI	AGCGCT	1 cut(s)	10
AfiI	CCNNNNNNNGG	5 cut(s)	69, 214, 336, 447, 448
AgsI	TTSAA	1 cut(s)	524
AjnI	CCWGG	6 cut(s)	249, 329, 377, 562, 672, 749
AloI	GAACNNNNNNTCC	2 cut(s)	711, 743
AluBI	AGCT	2 cut(s)	19, 700
AluI	AGCT	2 cut(s)	19, 700
Alw21I	GWGCWC	1 cut(s)	599
Alw26I	GTCTC	2 cut(s)	42, 762
AlwI	GGATC	2 cut(s)	152, 219
AlwNI	CAGNNNCTG	1 cut(s)	488
Ama87I	CYCGRG	2 cut(s)	230, 311
Aor13HI	TCCGGA	1 cut(s)	653
Aor51HI	AGCGCT	1 cut(s)	10
ApeKI	GCWGC	4 cut(s)	153, 340, 612, 734
ArsI	GACNNNNNNTTYG	1 cut(s)	27
AspLEI	GCGC	4 cut(s)	11, 183, 200, 617
AspS9I	GGNCC	1 cut(s)	243
AsuC2I	CCSGG	3 cut(s)	209, 312, 313
AvaI	CYCGRG	2 cut(s)	230, 311
AvaII	GGWCC	1 cut(s)	243
BanII	GRGCYC	3 cut(s)	231, 515, 757
Bbv12I	GWGCWC	1 cut(s)	599
BbvI	GCAGC	4 cut(s)	140, 327, 624, 721
BccI	CCATC	2 cut(s)	683, 797
BceAI	ACGGC	2 cut(s)	166, 649
BcgI	CGANNNNNNTGC	2 cut(s)	753, 787
BciT130I	CCWGG	6 cut(s)	251, 331, 379, 564, 674, 751
BcnI	CCSGG	3 cut(s)	209, 312, 313
BcoDI	GTCTC	2 cut(s)	42, 762
BfaI	CTAG	1 cut(s)	68
BfoI	RGCGCY	1 cut(s)	12
BisI	GCNGC	7 cut(s)	133, 154, 219, 341, 383, 613, 735
BlsI	GCNGC	7 cut(s)	134, 155, 220, 342, 384, 614, 736
Bme1390I	CCNGG	9 cut(s)	209, 251, 312, 313, 331, 379, 564, 674, 751
Bme18I	GGWCC	1 cut(s)	243
BmeT110I	CYCGRG	2 cut(s)	230, 311
BmgT120I	GGNCC	1 cut(s)	243
BmiI	GGNNCC	3 cut(s)	244, 245, 514
BmrFI	CCNGG	9 cut(s)	209, 251, 312, 313, 331, 379, 564, 674, 751
BmsI	GCATC	2 cut(s)	351, 406
BoxI	GACNNNNGTC	2 cut(s)	108, 435
BpmI	CTGGAG	3 cut(s)	365, 546, 695
BpuEI	CTTGAG	2 cut(s)	454, 763
BpuMI	CCSGG	3 cut(s)	209, 312, 313
BsaI	GGTCTC	1 cut(s)	42
BsaJI	CCNNGG	5 cut(s)	250, 311, 330, 749, 750
BsaWI	WCCGGW	2 cut(s)	30, 653
BsaXI	ACNNNNNCTCC	4 cut(s)	185, 215, 497, 527
Bsc4I	CCNNNNNNNGG	5 cut(s)	69, 214, 336, 447, 448
Bse3DI	GCAATG	1 cut(s)	392
BseAI	TCCGGA	1 cut(s)	653
BseBI	CCWGG	6 cut(s)	251, 331, 379, 564, 674, 751
BseDI	CCNNGG	5 cut(s)	250, 311, 330, 749, 750
BseGI	GGATG	1 cut(s)	366
BseLI	CCNNNNNNNGG	5 cut(s)	69, 214, 336, 447, 448
BseMI	GCAATG	1 cut(s)	392
BseMII	CTCAG	2 cut(s)	344, 591
BseRI	GAGGAG	3 cut(s)	78, 81, 780
BseXI	GCAGC	4 cut(s)	140, 327, 624, 721
Bsh1236I	CGCG	2 cut(s)	181, 198
Bsh1285I	CGRYCG	1 cut(s)	99
BsiEI	CGRYCG	1 cut(s)	99
BsiHKAI	GWGCWC	1 cut(s)	599
BsiHKCI	CYCGRG	2 cut(s)	230, 311
BsiSI	CCGG	6 cut(s)	31, 209, 273, 312, 654, 784
BslFI	GGGAC	4 cut(s)	256, 423, 470, 732
BslI	CCNNNNNNNGG	5 cut(s)	69, 214, 336, 447, 448
BsmAI	GTCTC	2 cut(s)	42, 762
BsmFI	GGGAC	4 cut(s)	256, 423, 470, 732
Bso31I	GGTCTC	1 cut(s)	42
BsoBI	CYCGRG	2 cut(s)	230, 311
Bsp1286I	GDGCHC	4 cut(s)	231, 515, 599, 757
Bsp13I	TCCGGA	1 cut(s)	653
Bsp143I	GATC	3 cut(s)	64, 157, 211
BspCNI	CTCAG	2 cut(s)	345, 592
BspEI	TCCGGA	1 cut(s)	653
BspFNI	CGCG	2 cut(s)	181, 198
BspLI	GGNNCC	3 cut(s)	244, 245, 514
BspPI	GGATC	2 cut(s)	152, 219
BspTNI	GGTCTC	1 cut(s)	42
BsrBI	CCGCTC	1 cut(s)	294
BsrDI	GCAATG	1 cut(s)	392
BssECI	CCNNGG	5 cut(s)	250, 311, 330, 749, 750
BssMI	GATC	3 cut(s)	64, 157, 211
Bst2UI	CCWGG	6 cut(s)	251, 331, 379, 564, 674, 751
Bst4CI	ACNGT	2 cut(s)	100, 128
Bst6I	CTCTTC	1 cut(s)	502
BstC8I	GCNNGC	4 cut(s)	327, 483, 710, 739
BstDEI	CTNAG	3 cut(s)	353, 569, 600
BstF5I	GGATG	1 cut(s)	366
BstFNI	CGCG	2 cut(s)	181, 198
BstH2I	RGCGCY	1 cut(s)	12
BstHHI	GCGC	4 cut(s)	11, 183, 200, 617
BstKTI	GATC	3 cut(s)	67, 160, 214
BstMAI	GTCTC	2 cut(s)	42, 762
BstMBI	GATC	3 cut(s)	64, 157, 211
BstMCI	CGRYCG	1 cut(s)	99
BstMWI	GCNNNNNNNGC	4 cut(s)	48, 189, 349, 780
BstNI	CCWGG	6 cut(s)	251, 331, 379, 564, 674, 751
BstNSI	RCATGY	1 cut(s)	425
BstPAI	GACNNNNGTC	2 cut(s)	108, 435
BstSCI	CCNGG	9 cut(s)	207, 249, 310, 311, 329, 377, 562, 672, 749
BstUI	CGCG	2 cut(s)	181, 198
BstV1I	GCAGC	4 cut(s)	140, 327, 624, 721
BstXI	CCANNNNNNTGG	1 cut(s)	257
BtsCI	GGATG	1 cut(s)	366
BtsI	GCAGTG	2 cut(s)	286, 486
BtsIMutI	CAGTG	3 cut(s)	286, 486, 597
Cac8I	GCNNGC	4 cut(s)	327, 483, 710, 739
CaiI	CAGNNNCTG	1 cut(s)	488
CfoI	GCGC	4 cut(s)	11, 183, 200, 617
Cfr13I	GGNCC	1 cut(s)	243
Cfr9I	CCCGGG	1 cut(s)	311
CseI	GACGC	1 cut(s)	467
CviAII	CATG	2 cut(s)	422, 731
DdeI	CTNAG	3 cut(s)	353, 569, 600
DpnI	GATC	3 cut(s)	66, 159, 213
DpnII	GATC	3 cut(s)	64, 157, 211
Eam1104I	CTCTTC	1 cut(s)	502
EarI	CTCTTC	1 cut(s)	502
EciI	GGCGGA	2 cut(s)	158, 179
Eco24I	GRGCYC	3 cut(s)	231, 515, 757
Eco31I	GGTCTC	1 cut(s)	42
Eco47I	GGWCC	1 cut(s)	243
Eco47III	AGCGCT	1 cut(s)	10
Eco57I	CTGAAG	1 cut(s)	354
Eco88I	CYCGRG	2 cut(s)	230, 311
EcoO109I	RGGNCCY	1 cut(s)	243
EcoRII	CCWGG	6 cut(s)	249, 329, 377, 562, 672, 749
EcoT38I	GRGCYC	3 cut(s)	231, 515, 757
FaeI	CATG	2 cut(s)	425, 734
FaiI	YATR	7 cut(s)	387, 423, 723, 732, 778, 794, 829
FalI	AAGNNNNNCTT	2 cut(s)	567, 599
FaqI	GGGAC	4 cut(s)	256, 423, 470, 732
FatI	CATG	2 cut(s)	421, 730
FauI	CCCGC	2 cut(s)	186, 287
Fnu4HI	GCNGC	7 cut(s)	133, 154, 219, 341, 383, 613, 735
FokI	GGATG	1 cut(s)	373
FriOI	GRGCYC	3 cut(s)	231, 515, 757
Fsp4HI	GCNGC	7 cut(s)	133, 154, 219, 341, 383, 613, 735
FspBI	CTAG	1 cut(s)	68
GlaI	GCGC	4 cut(s)	10, 182, 199, 616
GluI	GCNGC	7 cut(s)	133, 154, 219, 341, 383, 613, 735
GsuI	CTGGAG	3 cut(s)	365, 546, 695
HaeII	RGCGCY	1 cut(s)	12
HapII	CCGG	6 cut(s)	31, 209, 273, 312, 654, 784
HgaI	GACGC	1 cut(s)	467
HhaI	GCGC	4 cut(s)	11, 183, 200, 617
Hin1II	CATG	2 cut(s)	425, 734
Hin6I	GCGC	4 cut(s)	9, 181, 198, 615
HinP1I	GCGC	4 cut(s)	9, 181, 198, 615
HincII	GTYRAC	2 cut(s)	103, 631
HindII	GTYRAC	2 cut(s)	103, 631
HindIII	AAGCTT	1 cut(s)	698
HinfI	GANTC	4 cut(s)	77, 436, 726, 745
HpaII	CCGG	6 cut(s)	31, 209, 273, 312, 654, 784
Hpy166II	GTNNAC	3 cut(s)	103, 631, 719
Hpy188I	TCNGA	4 cut(s)	16, 96, 148, 373
Hpy188III	TCNNGA	5 cut(s)	258, 469, 575, 584, 654
Hpy8I	GTNNAC	3 cut(s)	103, 631, 719
Hpy99I	CGWCG	1 cut(s)	152
HpyAV	CCTTC	1 cut(s)	378
HpyCH4III	ACNGT	2 cut(s)	100, 128
HpyCH4V	TGCA	3 cut(s)	397, 421, 541
HpyF10VI	GCNNNNNNNGC	4 cut(s)	48, 189, 349, 780
HpyF3I	CTNAG	3 cut(s)	353, 569, 600
Hsp92II	CATG	2 cut(s)	425, 734
HspAI	GCGC	4 cut(s)	9, 181, 198, 615
KflI	GGGWCCC	1 cut(s)	243
Kpn2I	TCCGGA	1 cut(s)	653
Kzo9I	GATC	3 cut(s)	64, 157, 211
LmnI	GCTCC	3 cut(s)	16, 171, 518
Lsp1109I	GCAGC	4 cut(s)	140, 327, 624, 721
LweI	GCATC	2 cut(s)	351, 406
MaeI	CTAG	1 cut(s)	68
MaeIII	GTNAC	1 cut(s)	110
MalI	GATC	3 cut(s)	66, 159, 213
MbiI	CCGCTC	1 cut(s)	294
MboI	GATC	3 cut(s)	64, 157, 211
MboII	GAAGA	1 cut(s)	489
MhlI	GDGCHC	4 cut(s)	231, 515, 599, 757
MluCI	AATT	2 cut(s)	142, 519
MlyI	GAGTC	3 cut(s)	71, 445, 754
MmeI	TCCRAC	2 cut(s)	119, 171
MroI	TCCGGA	1 cut(s)	653
MseI	TTAA	1 cut(s)	644
MslI	CAYNNNNRTG	1 cut(s)	426
MspI	CCGG	6 cut(s)	31, 209, 273, 312, 654, 784
MspR9I	CCNGG	9 cut(s)	209, 251, 312, 313, 331, 379, 564, 674, 751
MvaI	CCWGG	6 cut(s)	251, 331, 379, 564, 674, 751
MvnI	CGCG	2 cut(s)	181, 198
MwoI	GCNNNNNNNGC	4 cut(s)	48, 189, 349, 780
NciI	CCSGG	3 cut(s)	209, 312, 313
NdeII	GATC	3 cut(s)	64, 157, 211
NlaIII	CATG	2 cut(s)	425, 734
NlaIV	GGNNCC	3 cut(s)	244, 245, 514
NmuCI	GTSAC	1 cut(s)	110
NspI	RCATGY	1 cut(s)	425
PaeR7I	CTCGAG	1 cut(s)	230
PasI	CCCWGGG	1 cut(s)	750
PfeI	GAWTC	1 cut(s)	726
PfoI	TCCNGGA	1 cut(s)	207
PkrI	GCNGC	7 cut(s)	134, 155, 220, 342, 384, 614, 736
PleI	GAGTC	3 cut(s)	71, 444, 753
PpsI	GAGTC	3 cut(s)	71, 444, 753
PpuMI	RGGWCCY	1 cut(s)	243
PshAI	GACNNNNGTC	2 cut(s)	108, 435
Psp5II	RGGWCCY	1 cut(s)	243
Psp6I	CCWGG	6 cut(s)	249, 329, 377, 562, 672, 749
PspGI	CCWGG	6 cut(s)	249, 329, 377, 562, 672, 749
PspN4I	GGNNCC	3 cut(s)	244, 245, 514
PspPI	GGNCC	1 cut(s)	243
PspPPI	RGGWCCY	1 cut(s)	243
PspXI	VCTCGAGB	1 cut(s)	230
PstNI	CAGNNNCTG	1 cut(s)	488
RseI	CAYNNNNRTG	1 cut(s)	426
SaqAI	TTAA	1 cut(s)	644
SatI	GCNGC	7 cut(s)	133, 154, 219, 341, 383, 613, 735
Sau3AI	GATC	3 cut(s)	64, 157, 211
Sau96I	GGNCC	1 cut(s)	243
SchI	GAGTC	3 cut(s)	71, 445, 754
ScrFI	CCNGG	9 cut(s)	209, 251, 312, 313, 331, 379, 564, 674, 751
SduI	GDGCHC	4 cut(s)	231, 515, 599, 757
SetI	ASST	6 cut(s)	21, 38, 412, 568, 582, 702
SfaNI	GCATC	2 cut(s)	351, 406
Sfr274I	CTCGAG	1 cut(s)	230
SinI	GGWCC	1 cut(s)	243
SlaI	CTCGAG	1 cut(s)	230
SmaI	CCCGGG	1 cut(s)	313
SmiMI	CAYNNNNRTG	1 cut(s)	426
SmlI	CTYRAG	3 cut(s)	230, 433, 742
SmoI	CTYRAG	3 cut(s)	230, 433, 742
Sse9I	AATT	2 cut(s)	142, 519
SspMI	CTAG	1 cut(s)	68
StyD4I	CCNGG	9 cut(s)	207, 249, 310, 311, 329, 377, 562, 672, 749
TaaI	ACNGT	2 cut(s)	100, 128
TaqI	TCGA	4 cut(s)	75, 231, 500, 763
TaqII	GACCGA	1 cut(s)	120
TasI	AATT	2 cut(s)	142, 519
TauI	GCSGC	3 cut(s)	135, 221, 385
TfiI	GAWTC	1 cut(s)	726
Tru1I	TTAA	1 cut(s)	644
Tru9I	TTAA	1 cut(s)	644
TscAI	CASTG	3 cut(s)	286, 493, 604
TseFI	GTSAC	1 cut(s)	110
TseI	GCWGC	4 cut(s)	153, 340, 612, 734
Tsp45I	GTSAC	1 cut(s)	110
TspGWI	ACGGA	1 cut(s)	420
TspMI	CCCGGG	1 cut(s)	311
TspRI	CASTG	3 cut(s)	286, 493, 604
VpaK11BI	GGWCC	1 cut(s)	243
XceI	RCATGY	1 cut(s)	425
XcmI	CCANNNNNNNNNTGG	1 cut(s)	254
XhoI	CTCGAG	1 cut(s)	230
XmaI	CCCGGG	1 cut(s)	311
XspI	CTAG	1 cut(s)	68

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.