Rorug04G0080100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0005406
Physical Location & Seq
Reverse (-)
12218937 .. 12219278
342 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0080100.1

Sequence Viewer

Length: 342 bp
ATGGTTGAAAGTGATTATGAAGTTCTAGTTAACATGATCAAGCAGGGTGTGAATGATTTACATTATTCTAAAACTCTTATTGATTGCTGCAAATTTTTGATTAGACAGTTTCCTCACTGTGAAGTTAGCCACATTTATCGTGAGATTAATCAGGTTGCTGATGTGCTTTCTAAATCTGGAGTGAATGTTGAGATTGGAGTGCATGTTATGGAGCAACCTCCTCCACAAGTTACTTCCTTCTTGTTGGATGACTTGTGTGAATATCCTACATATAGGACAGTAGTTCCTAGAGTGTATTTTTTTCTCTTCTTTGTTGCTGGCCGTTTGGTCTCCATTTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

113

Amino Acids

13.11

Weight (kDa)

5.43

Isoelectric Point (pI)

29.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 2 - 59 2.8e-11 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 319
AcsI RAATTY 1 cut(s) 92
AgsI TTSAA 1 cut(s) 8
Alw26I GTCTC 1 cut(s) 334
AoxI GGCC 1 cut(s) 319
ApeKI GCWGC 1 cut(s) 87
ApoI RAATTY 1 cut(s) 92
AseI ATTAAT 1 cut(s) 147
BbvI GCAGC 1 cut(s) 74
BceAI ACGGC 1 cut(s) 306
BclI TGATCA 1 cut(s) 36
BcoDI GTCTC 1 cut(s) 334
BfaI CTAG 2 cut(s) 26, 288
BisI GCNGC 1 cut(s) 88
BlsI GCNGC 1 cut(s) 89
BpmI CTGGAG 1 cut(s) 198
BsaI GGTCTC 1 cut(s) 334
BsaXI ACNNNNNCTCC 4 cut(s) 171, 189, 201, 219
BseGI GGATG 1 cut(s) 253
BseRI GAGGAG 1 cut(s) 210
BseXI GCAGC 1 cut(s) 74
BshFI GGCC 1 cut(s) 321
BsmAI GTCTC 1 cut(s) 334
BsnI GGCC 1 cut(s) 321
Bso31I GGTCTC 1 cut(s) 334
Bsp143I GATC 1 cut(s) 36
BspANI GGCC 1 cut(s) 321
BspTNI GGTCTC 1 cut(s) 334
BssMI GATC 1 cut(s) 36
Bst4CI ACNGT 3 cut(s) 108, 119, 280
Bst6I CTCTTC 1 cut(s) 311
BstC8I GCNNGC 1 cut(s) 319
BstF5I GGATG 1 cut(s) 253
BstKTI GATC 1 cut(s) 39
BstMAI GTCTC 1 cut(s) 334
BstMBI GATC 1 cut(s) 36
BstNSI RCATGY 1 cut(s) 206
BstV1I GCAGC 1 cut(s) 74
BsuRI GGCC 1 cut(s) 321
BtsCI GGATG 1 cut(s) 253
BtsIMutI CAGTG 1 cut(s) 115
Cac8I GCNNGC 1 cut(s) 319
CviAII CATG 2 cut(s) 34, 203
CviJI RGCY 2 cut(s) 129, 321
CviKI_1 RGCY 2 cut(s) 129, 321
DpnI GATC 1 cut(s) 38
DpnII GATC 1 cut(s) 36
EaeI YGGCCR 1 cut(s) 319
Eam1104I CTCTTC 1 cut(s) 311
EarI CTCTTC 1 cut(s) 311
Eco31I GGTCTC 1 cut(s) 334
FaeI CATG 2 cut(s) 37, 206
FaiI YATR 6 cut(s) 18, 35, 204, 209, 271, 273
FatI CATG 2 cut(s) 33, 202
FbaI TGATCA 1 cut(s) 36
Fnu4HI GCNGC 1 cut(s) 88
FokI GGATG 1 cut(s) 260
Fsp4HI GCNGC 1 cut(s) 88
FspBI CTAG 2 cut(s) 26, 288
GluI GCNGC 1 cut(s) 88
GsuI CTGGAG 1 cut(s) 198
HaeIII GGCC 1 cut(s) 321
Hin1II CATG 2 cut(s) 37, 206
HincII GTYRAC 1 cut(s) 31
HindII GTYRAC 1 cut(s) 31
HpaI GTTAAC 1 cut(s) 31
Hpy166II GTNNAC 1 cut(s) 31
Hpy188III TCNNGA 2 cut(s) 140, 177
Hpy8I GTNNAC 1 cut(s) 31
HpyAV CCTTC 1 cut(s) 247
HpyCH4III ACNGT 3 cut(s) 108, 119, 280
HpyCH4V TGCA 2 cut(s) 90, 202
Hsp92II CATG 2 cut(s) 37, 206
Ksp22I TGATCA 1 cut(s) 36
KspAI GTTAAC 1 cut(s) 31
Kzo9I GATC 1 cut(s) 36
LmnI GCTCC 1 cut(s) 211
LpnPI CCDG 4 cut(s) 29, 137, 162, 303
Lsp1109I GCAGC 1 cut(s) 74
MaeI CTAG 2 cut(s) 26, 288
MaeIII GTNAC 1 cut(s) 229
MalI GATC 1 cut(s) 38
MboI GATC 1 cut(s) 36
MboII GAAGA 1 cut(s) 298
MluCI AATT 1 cut(s) 92
MmeI TCCRAC 1 cut(s) 225
MnlI CCTC 3 cut(s) 123, 228, 231
MseI TTAA 3 cut(s) 30, 147, 340
NdeII GATC 1 cut(s) 36
NlaIII CATG 2 cut(s) 37, 206
NspI RCATGY 1 cut(s) 206
PkrI GCNGC 1 cut(s) 89
PshBI ATTAAT 1 cut(s) 147
SaqAI TTAA 3 cut(s) 30, 147, 340
SatI GCNGC 1 cut(s) 88
Sau3AI GATC 1 cut(s) 36
SetI ASST 2 cut(s) 156, 220
Sse9I AATT 1 cut(s) 92
SspMI CTAG 2 cut(s) 26, 288
TaaI ACNGT 3 cut(s) 108, 119, 280
TasI AATT 1 cut(s) 92
Tru1I TTAA 3 cut(s) 30, 147, 340
Tru9I TTAA 3 cut(s) 30, 147, 340
TscAI CASTG 1 cut(s) 122
TseI GCWGC 1 cut(s) 87
TspDTI ATGAA 1 cut(s) 33
TspRI CASTG 1 cut(s) 122
VspI ATTAAT 1 cut(s) 147
XapI RAATTY 1 cut(s) 92
XceI RCATGY 1 cut(s) 206
XspI CTAG 2 cut(s) 26, 288
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.