Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0005406

Physical Location & Seq

Genomic Coordinates Reverse (-)

59867771 .. 59869352

Gene Structure 1582 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000014951

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGACGAGCGCATCGGAGCTTTTCTACAACCGCAGGTCTCGCTACAACAACAGCCGAGCAACCCACCACGATCTCGGCTTCGACTCCCTCTGTCCGCCCGACCGGATTTACAATCCTCGCCGTCACCACAACCACCATGAATCCGACGGCTGTGATCTCCTCCGCCGCACCCCCTCCCGGCATCTACGCCACCGCGCCTCCCTCACGGATCATGAAAATTGTGCCGAACTTATTCTAGGATCATTTCTTGCTTTGATATGCTCCTACTTGTGGGAGGGACTGAATTCTGCCGTCTTATTTGAAAGAGCTGAGATTTCACAGCGACGCAGGGCATTGCATATATACAGGAGTGGTCTACTTGGTGATGATTTGGCTTCTGTTGATGAAAGGGATTGGAGTACTGAAACCTGGCCAGGTCGGTCAGCCAGTGTTTCCCAATCCAGTGACTTGAGTTCCCAAATTGAAAGGATGCATCTCTTGCAAGAAGCAAACAAGAAGCCTCCAGGTCTTACTCAAGAGGTCCTTGATTGCTTGAGTGTTGAGCTTTTCAGCAACACAGAATTGGGTGTTGACGGGTTGGTAACAAAAGCTTCACGAGATTGTAGTATATGCCTGGAGAGTTTCATGCATGGGGAAGAGCTTATATGCTTGCCCTGCACACATAGATTCCACACTACCTGCTTGGGACCCTGGGTTCGGATGCGAGGAGACTGCCCATATTGTCGGAGAGCTATAATTGTAGATAGTGACATGTCCAAAAGGACTATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001664 GO:0003674 GO:0003824 GO:0004842 GO:0005102 GO:0005109 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007267 GO:0008150 GO:0008152 GO:0008283 GO:0009056 GO:0009057 GO:0009966 GO:0009968 GO:0009987 GO:0010498 GO:0010646 GO:0010648 GO:0016020 GO:0016021 GO:0016055 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0022603 GO:0023051 GO:0023052 GO:0023057 GO:0030111 GO:0030163 GO:0030178 GO:0031224 GO:0031226 GO:0032446 GO:0032801 GO:0035567 GO:0036211 GO:0038018 GO:0043112 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044425 GO:0044459 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051603 GO:0051716 GO:0060070 GO:0060071 GO:0060828 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0071944 GO:0072089 GO:0090090 GO:0090175 GO:0140096 GO:0198738 GO:1901564 GO:1901565 GO:1901575 GO:1905114 GO:1905330 GO:2000026 GO:2000027 GO:2000050 GO:2000051

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

257

Amino Acids

29.27

Weight (kDa)

6.53

Isoelectric Point (pI)

68.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	200 - 242	8.3e-13	Ring finger domain
zf-RING_11	PF17123	200 - 228	3.1e-10	RING-like zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005406)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49850
fragaria_vesca	FvH4_2g04490 FvH4_2g04490
malus_domestica	MD05G1095900.v1.1 MD09G1148100.v1.1 MD10G1102100.v1.1
prunus_persica	Prupe.8G140300_v2.0.a1 Prupe.8G140300_v2.0.a1 Prupe.8G140300_v2.0.a1 Prupe.8G140300_v2.0.a1
pyrus_communis	pycom05g09460 pycom10g08780
rosa_chinensis	RchiOBHm_Chr6g0253981
rosa_laevigata	RLG00000014951
rosa_multiflora	Rmu_sc0001716.1_g000017
rosa_roxburghii	Rroxscaffold_7G00211330
rosa_rugosa	Rorug04G0080100 Rorug05G0548700
rosa_samantha	Rh2BG479300 Rh5DG329300 Rh6AG065200 Rh6AG082700 Rh6BG058200 Rh6CG058200 Rh6CG058300 Rh6DG055100 Rh6DG069100 Rh7CG154800
rosa_wichuraiana	Rw6G005740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	24, 686
AccI	GTMKAC	1 cut(s)	355
AccII	CGCG	1 cut(s)	195
AciI	CCGC	5 cut(s)	31, 95, 163, 166, 193
AclWI	GGATC	2 cut(s)	216, 247
AcoI	YGGCCR	1 cut(s)	410
AcsI	RAATTY	1 cut(s)	283
AfaI	GTAC	1 cut(s)	400
AfiI	CCNNNNNNNGG	3 cut(s)	177, 270, 696
AflIII	ACRYGT	1 cut(s)	750
AgsI	TTSAA	2 cut(s)	302, 464
AjnI	CCWGG	5 cut(s)	407, 412, 502, 612, 689
AloI	GAACNNNNNNTCC	2 cut(s)	678, 710
AluBI	AGCT	6 cut(s)	19, 308, 544, 590, 640, 731
AluI	AGCT	6 cut(s)	19, 308, 544, 590, 640, 731
Alw26I	GTCTC	2 cut(s)	42, 702
AlwI	GGATC	2 cut(s)	216, 247
AoxI	GGCC	1 cut(s)	410
ApoI	RAATTY	1 cut(s)	283
ArsI	GACNNNNNNTTYG	2 cut(s)	678, 710
Asp700I	GAANNNNTTC	1 cut(s)	231
AspLEI	GCGC	2 cut(s)	11, 197
AspS9I	GGNCC	2 cut(s)	520, 686
AsuC2I	CCSGG	1 cut(s)	178
AsuHPI	GGTGA	2 cut(s)	116, 374
AvaII	GGWCC	2 cut(s)	520, 686
BalI	TGGCCA	1 cut(s)	412
BauI	CACGAG	1 cut(s)	594
BceAI	ACGGC	3 cut(s)	105, 163, 275
BcgI	CGANNNNNNTGC	2 cut(s)	693, 727
BciT130I	CCWGG	5 cut(s)	409, 414, 504, 614, 691
BcnI	CCSGG	1 cut(s)	178
BcoDI	GTCTC	2 cut(s)	42, 702
BfaI	CTAG	1 cut(s)	236
BfuAI	ACCTGC	2 cut(s)	24, 686
BisI	GCNGC	1 cut(s)	166
BlsI	GCNGC	1 cut(s)	167
BmcAI	AGTACT	1 cut(s)	400
Bme1390I	CCNGG	6 cut(s)	178, 409, 414, 504, 614, 691
Bme18I	GGWCC	2 cut(s)	520, 686
BmgT120I	GGNCC	2 cut(s)	520, 686
BmiI	GGNNCC	2 cut(s)	687, 688
BmrFI	CCNGG	6 cut(s)	178, 409, 414, 504, 614, 691
BmsI	GCATC	5 cut(s)	20, 190, 459, 481, 690
BpmI	CTGGAG	2 cut(s)	486, 635
BpuEI	CTTGAG	3 cut(s)	469, 498, 553
BpuMI	CCSGG	1 cut(s)	178
BsaI	GGTCTC	1 cut(s)	42
BsaJI	CCNNGG	2 cut(s)	689, 690
BsaWI	WCCGGW	1 cut(s)	102
BsaXI	ACNNNNNCTCC	2 cut(s)	182, 212
Bsc4I	CCNNNNNNNGG	3 cut(s)	177, 270, 696
Bse1I	ACTGG	2 cut(s)	426, 441
Bse3DI	GCAATG	1 cut(s)	332
BseBI	CCWGG	5 cut(s)	409, 414, 504, 614, 691
BseDI	CCNNGG	2 cut(s)	689, 690
BseGI	GGATG	2 cut(s)	474, 705
BseLI	CCNNNNNNNGG	3 cut(s)	177, 270, 696
BseMI	GCAATG	1 cut(s)	332
BseMII	CTCAG	1 cut(s)	300
BseNI	ACTGG	2 cut(s)	426, 441
BseRI	GAGGAG	2 cut(s)	149, 720
BsgI	GTGCAG	1 cut(s)	640
Bsh1236I	CGCG	1 cut(s)	195
Bsh1285I	CGRYCG	1 cut(s)	103
BshFI	GGCC	1 cut(s)	412
BsiEI	CGRYCG	1 cut(s)	103
BsiSI	CCGG	2 cut(s)	103, 178
BslFI	GGGAC	2 cut(s)	291, 699
BslI	CCNNNNNNNGG	3 cut(s)	177, 270, 696
BsmAI	GTCTC	2 cut(s)	42, 702
BsmFI	GGGAC	2 cut(s)	291, 699
BsnI	GGCC	1 cut(s)	412
Bso31I	GGTCTC	1 cut(s)	42
Bsp143I	GATC	4 cut(s)	70, 154, 208, 239
BspACI	CCGC	5 cut(s)	31, 95, 163, 166, 193
BspANI	GGCC	1 cut(s)	412
BspCNI	CTCAG	1 cut(s)	301
BspFNI	CGCG	1 cut(s)	195
BspHI	TCATGA	1 cut(s)	211
BspLI	GGNNCC	2 cut(s)	687, 688
BspMI	ACCTGC	2 cut(s)	24, 686
BspPI	GGATC	2 cut(s)	216, 247
BspQI	GCTCTTC	1 cut(s)	630
BspTNI	GGTCTC	1 cut(s)	42
BsrDI	GCAATG	1 cut(s)	332
BsrI	ACTGG	2 cut(s)	426, 441
BssECI	CCNNGG	2 cut(s)	689, 690
BssMI	GATC	4 cut(s)	70, 154, 208, 239
BssSI	CACGAG	1 cut(s)	594
Bst2BI	CACGAG	1 cut(s)	594
Bst2UI	CCWGG	5 cut(s)	409, 414, 504, 614, 691
Bst6I	CTCTTC	1 cut(s)	630
BstAPI	GCANNNNNTGC	1 cut(s)	478
BstC8I	GCNNGC	1 cut(s)	650
BstDEI	CTNAG	1 cut(s)	309
BstF5I	GGATG	2 cut(s)	474, 705
BstFNI	CGCG	1 cut(s)	195
BstHHI	GCGC	2 cut(s)	11, 197
BstKTI	GATC	4 cut(s)	73, 157, 211, 242
BstMAI	GTCTC	2 cut(s)	42, 702
BstMBI	GATC	4 cut(s)	70, 154, 208, 239
BstMCI	CGRYCG	1 cut(s)	103
BstMWI	GCNNNNNNNGC	3 cut(s)	39, 478, 654
BstNI	CCWGG	5 cut(s)	409, 414, 504, 614, 691
BstNSI	RCATGY	1 cut(s)	754
BstSCI	CCNGG	6 cut(s)	176, 407, 412, 502, 612, 689
BstUI	CGCG	1 cut(s)	195
BsuRI	GGCC	1 cut(s)	412
BtsCI	GGATG	2 cut(s)	474, 705
BtsIMutI	CAGTG	2 cut(s)	433, 448
BveI	ACCTGC	2 cut(s)	24, 686
Cac8I	GCNNGC	1 cut(s)	650
CciI	TCATGA	1 cut(s)	211
CfoI	GCGC	2 cut(s)	11, 197
Cfr13I	GGNCC	2 cut(s)	520, 686
CseI	GACGC	1 cut(s)	333
Csp6I	GTAC	1 cut(s)	399
CviAII	CATG	5 cut(s)	137, 212, 625, 629, 751
CviQI	GTAC	1 cut(s)	399
DdeI	CTNAG	1 cut(s)	309
DpnI	GATC	4 cut(s)	72, 156, 210, 241
DpnII	GATC	4 cut(s)	70, 154, 208, 239
EaeI	YGGCCR	1 cut(s)	410
Eam1104I	CTCTTC	1 cut(s)	630
EarI	CTCTTC	1 cut(s)	630
EciI	GGCGGA	2 cut(s)	84, 152
Eco31I	GGTCTC	1 cut(s)	42
Eco47I	GGWCC	2 cut(s)	520, 686
EcoO109I	RGGNCCY	2 cut(s)	520, 686
EcoRI	GAATTC	1 cut(s)	283
EcoRII	CCWGG	5 cut(s)	407, 412, 502, 612, 689
EcoT22I	ATGCAT	2 cut(s)	474, 630
FaeI	CATG	5 cut(s)	140, 215, 628, 632, 754
FalI	AAGNNNNNCTT	2 cut(s)	507, 539
FaqI	GGGAC	2 cut(s)	291, 699
FatI	CATG	5 cut(s)	136, 211, 624, 628, 750
FblI	GTMKAC	1 cut(s)	355
Fnu4HI	GCNGC	1 cut(s)	166
FokI	GGATG	2 cut(s)	481, 712
Fsp4HI	GCNGC	1 cut(s)	166
FspBI	CTAG	1 cut(s)	236
GlaI	GCGC	2 cut(s)	10, 196
GluI	GCNGC	1 cut(s)	166
GsuI	CTGGAG	2 cut(s)	486, 635
HaeIII	GGCC	1 cut(s)	412
HapII	CCGG	2 cut(s)	103, 178
HgaI	GACGC	1 cut(s)	333
HhaI	GCGC	2 cut(s)	11, 197
Hin1II	CATG	5 cut(s)	140, 215, 628, 632, 754
Hin6I	GCGC	2 cut(s)	9, 195
HinP1I	GCGC	2 cut(s)	9, 195
HincII	GTYRAC	1 cut(s)	571
HindII	GTYRAC	1 cut(s)	571
HindIII	AAGCTT	1 cut(s)	588
HinfI	GANTC	3 cut(s)	83, 140, 666
HpaII	CCGG	2 cut(s)	103, 178
HphI	GGTGA	2 cut(s)	116, 374
Hpy166II	GTNNAC	2 cut(s)	356, 571
Hpy188I	TCNGA	4 cut(s)	16, 145, 699, 726
Hpy188III	TCNNGA	3 cut(s)	212, 515, 594
Hpy8I	GTNNAC	2 cut(s)	356, 571
Hpy99I	CGWCG	2 cut(s)	149, 327
HpyCH4V	TGCA	5 cut(s)	337, 472, 481, 628, 657
HpyF10VI	GCNNNNNNNGC	3 cut(s)	39, 478, 654
HpyF3I	CTNAG	1 cut(s)	309
Hsp92II	CATG	5 cut(s)	140, 215, 628, 632, 754
HspAI	GCGC	2 cut(s)	9, 195
KflI	GGGWCCC	1 cut(s)	686
Kzo9I	GATC	4 cut(s)	70, 154, 208, 239
LguI	GCTCTTC	1 cut(s)	630
LmnI	GCTCC	2 cut(s)	16, 266
LweI	GCATC	5 cut(s)	20, 190, 459, 481, 690
MaeI	CTAG	1 cut(s)	236
MaeIII	GTNAC	4 cut(s)	122, 443, 580, 746
MalI	GATC	4 cut(s)	72, 156, 210, 241
MboI	GATC	4 cut(s)	70, 154, 208, 239
MboII	GAAGA	1 cut(s)	647
MlsI	TGGCCA	1 cut(s)	412
MluCI	AATT	5 cut(s)	217, 283, 459, 560, 735
MluNI	TGGCCA	1 cut(s)	412
MlyI	GAGTC	1 cut(s)	77
MmeI	TCCRAC	2 cut(s)	168, 704
Mox20I	TGGCCA	1 cut(s)	412
Mph1103I	ATGCAT	2 cut(s)	474, 630
MroXI	GAANNNNTTC	1 cut(s)	231
MscI	TGGCCA	1 cut(s)	412
Msp20I	TGGCCA	1 cut(s)	412
MspI	CCGG	2 cut(s)	103, 178
MspR9I	CCNGG	6 cut(s)	178, 409, 414, 504, 614, 691
MvaI	CCWGG	5 cut(s)	409, 414, 504, 614, 691
MvnI	CGCG	1 cut(s)	195
MwoI	GCNNNNNNNGC	3 cut(s)	39, 478, 654
NciI	CCSGG	1 cut(s)	178
NdeII	GATC	4 cut(s)	70, 154, 208, 239
NlaIII	CATG	5 cut(s)	140, 215, 628, 632, 754
NlaIV	GGNNCC	2 cut(s)	687, 688
NmeAIII	GCCGAG	2 cut(s)	54, 80
NmuCI	GTSAC	3 cut(s)	122, 443, 746
NsiI	ATGCAT	2 cut(s)	474, 630
NspI	RCATGY	1 cut(s)	754
PagI	TCATGA	1 cut(s)	211
PasI	CCCWGGG	1 cut(s)	690
PciI	ACATGT	1 cut(s)	750
PciSI	GCTCTTC	1 cut(s)	630
PdmI	GAANNNNTTC	1 cut(s)	231
PfeI	GAWTC	2 cut(s)	140, 666
PkrI	GCNGC	1 cut(s)	167
PleI	GAGTC	1 cut(s)	77
PpsI	GAGTC	1 cut(s)	77
PpuMI	RGGWCCY	2 cut(s)	520, 686
PscI	ACATGT	1 cut(s)	750
Psp5II	RGGWCCY	2 cut(s)	520, 686
Psp6I	CCWGG	5 cut(s)	407, 412, 502, 612, 689
PspGI	CCWGG	5 cut(s)	407, 412, 502, 612, 689
PspN4I	GGNNCC	2 cut(s)	687, 688
PspPI	GGNCC	2 cut(s)	520, 686
PspPPI	RGGWCCY	2 cut(s)	520, 686
RsaI	GTAC	1 cut(s)	400
RsaNI	GTAC	1 cut(s)	399
SapI	GCTCTTC	1 cut(s)	630
SatI	GCNGC	1 cut(s)	166
Sau3AI	GATC	4 cut(s)	70, 154, 208, 239
Sau96I	GGNCC	2 cut(s)	520, 686
ScaI	AGTACT	1 cut(s)	400
SchI	GAGTC	1 cut(s)	77
ScrFI	CCNGG	6 cut(s)	178, 409, 414, 504, 614, 691
SfaNI	GCATC	5 cut(s)	20, 190, 459, 481, 690
SinI	GGWCC	2 cut(s)	520, 686
SmlI	CTYRAG	3 cut(s)	448, 513, 532
SmoI	CTYRAG	3 cut(s)	448, 513, 532
Sse9I	AATT	5 cut(s)	217, 283, 459, 560, 735
SsiI	CCGC	5 cut(s)	31, 95, 163, 166, 193
SspMI	CTAG	1 cut(s)	236
StyD4I	CCNGG	6 cut(s)	176, 407, 412, 502, 612, 689
TaqI	TCGA	1 cut(s)	81
TaqII	GACCGA	1 cut(s)	408
TasI	AATT	5 cut(s)	217, 283, 459, 560, 735
TatI	WGTACW	1 cut(s)	398
TauI	GCSGC	1 cut(s)	168
TfiI	GAWTC	2 cut(s)	140, 666
TscAI	CASTG	2 cut(s)	433, 448
TseFI	GTSAC	3 cut(s)	122, 443, 746
Tsp45I	GTSAC	3 cut(s)	122, 443, 746
TspDTI	ATGAA	4 cut(s)	153, 228, 399, 613
TspGWI	ACGGA	1 cut(s)	221
TspRI	CASTG	2 cut(s)	433, 448
VpaK11BI	GGWCC	2 cut(s)	520, 686
XapI	RAATTY	1 cut(s)	283
XceI	RCATGY	1 cut(s)	754
XmiI	GTMKAC	1 cut(s)	355
XmnI	GAANNNNTTC	1 cut(s)	231
XspI	CTAG	1 cut(s)	236
ZrmI	AGTACT	1 cut(s)	400
Zsp2I	ATGCAT	2 cut(s)	474, 630

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.