Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0005406

Physical Location & Seq

Genomic Coordinates Reverse (-)

16661108 .. 16663073

Gene Structure 1966 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1102100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 837 bp

ATGTGTATGACGAGCGCTTCGGAGCTTTTCTACAACCGGAGGTCTCGCTACAACAGCCGAACCGCCACCGATCTAGGGTTCGACTCCCTCCCTCCTCCTCCGACCGTTGACCGAAGTCACAACCACAATCACGGTCGCCGCCCCCACAATTCCGACGGCTGCGATCCCCTCCTCCGCCGAACCCCGCGCCATTTCCACCACCGCGCCTCCCTCCCGGATCGGGCGGCGGTTGGGCTCGAGCAGGGTGGGACCCACCAGGGTTCTGGAAATGGGGTCGCCGGAAGCAGTGCTGGTTTGAGCGGGAACGAGAGGCTTCCCGGGTCTGTTTTGCTCGCCAGGGAAAGGCTGCTGGAGAGGCTGAGAGGGATGCCTCCTTCAGAAACCAGGCGGCGTAGAGCATTGCATCTTTACGGAGGTGGGCTACTGCATGTTGATGACTTGAGTCCCCTTGTAAGGGATTGGGACGCTGAAATCTTGACAAGTCAGCCAGCCAGTGCCTACTCTTCAACTAACTTGGGCTCCCAAATTGAAAGGCTACATCTCTTGCAAGAAGTGAACAAGAAGCCTCCAGGTCTCAGTCAAGAGGTTCTTGATTGTTTGAGCCCTGAGATTTTCAGCAGCGCAGAAGTGGGTGTCGACGGCTTGGTGTTAAGGGCTTCCGGAGATTGTAGTATTTGCCTGGAGAGTTTTACCGATGGAGATAAGCTTATTTGCTTGCCTTGTGAGCATAGATTCCATGCTGCCTGCTTGAGTCCCTGGGCTCGTATTCGAGGGGACTGCCCATACTGCCGGAGAGTTATAGTTGTAGATAGTCAAAATGCTAAAGGGACTACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001664 GO:0003674 GO:0003824 GO:0004842 GO:0005102 GO:0005109 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007267 GO:0008150 GO:0008152 GO:0008283 GO:0009056 GO:0009057 GO:0009966 GO:0009968 GO:0009987 GO:0010498 GO:0010646 GO:0010648 GO:0016020 GO:0016021 GO:0016055 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0022603 GO:0023051 GO:0023052 GO:0023057 GO:0030111 GO:0030163 GO:0030178 GO:0031224 GO:0031226 GO:0032446 GO:0032801 GO:0035567 GO:0036211 GO:0038018 GO:0043112 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044425 GO:0044459 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051603 GO:0051716 GO:0060070 GO:0060071 GO:0060828 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0071944 GO:0072089 GO:0090090 GO:0090175 GO:0140096 GO:0198738 GO:1901564 GO:1901565 GO:1901575 GO:1905114 GO:1905330 GO:2000026 GO:2000027 GO:2000050 GO:2000051

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

279

Amino Acids

30.46

Weight (kDa)

8.08

Isoelectric Point (pI)

65.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	222 - 264	4.3e-14	Ring finger domain
zf-RING_11	PF17123	222 - 250	1.5e-11	RING-like zinc finger
zf-C3HC4_2	PF13923	223 - 263	5.6e-06	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	223 - 263	8.1e-06	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005406)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49850
fragaria_vesca	FvH4_2g04490 FvH4_2g04490
malus_domestica	MD05G1095900.v1.1 MD09G1148100.v1.1 MD10G1102100.v1.1
prunus_persica	Prupe.8G140300_v2.0.a1 Prupe.8G140300_v2.0.a1 Prupe.8G140300_v2.0.a1 Prupe.8G140300_v2.0.a1
pyrus_communis	pycom05g09460 pycom10g08780
rosa_chinensis	RchiOBHm_Chr6g0253981
rosa_laevigata	RLG00000014951
rosa_multiflora	Rmu_sc0001716.1_g000017
rosa_roxburghii	Rroxscaffold_7G00211330
rosa_rugosa	Rorug04G0080100 Rorug05G0548700
rosa_samantha	Rh2BG479300 Rh5DG329300 Rh6AG065200 Rh6AG082700 Rh6BG058200 Rh6CG058200 Rh6CG058300 Rh6DG055100 Rh6DG069100 Rh7CG154800
rosa_wichuraiana	Rw6G005740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	300
AccI	GTMKAC	1 cut(s)	636
AccII	CGCG	2 cut(s)	187, 204
AccIII	TCCGGA	1 cut(s)	659
AciI	CCGC	9 cut(s)	63, 139, 175, 185, 202, 224, 227, 300, 388
AclWI	GGATC	2 cut(s)	158, 225
AcuI	CTGAAG	1 cut(s)	360
AfeI	AGCGCT	1 cut(s)	16
AfiI	CCNNNNNNNGG	5 cut(s)	75, 220, 342, 453, 454
AgsI	TTSAA	2 cut(s)	507, 530
AjnI	CCWGG	6 cut(s)	255, 335, 383, 568, 678, 755
AluBI	AGCT	2 cut(s)	25, 706
AluI	AGCT	2 cut(s)	25, 706
Alw26I	GTCTC	2 cut(s)	48, 578
AlwI	GGATC	2 cut(s)	158, 225
Ama87I	CYCGRG	2 cut(s)	236, 317
Aor13HI	TCCGGA	1 cut(s)	659
Aor51HI	AGCGCT	1 cut(s)	16
ApeKI	GCWGC	4 cut(s)	159, 346, 618, 740
ArsI	GACNNNNNNTTYG	1 cut(s)	33
AspLEI	GCGC	4 cut(s)	17, 189, 206, 623
AspS9I	GGNCC	1 cut(s)	249
AsuC2I	CCSGG	3 cut(s)	215, 318, 319
AvaI	CYCGRG	2 cut(s)	236, 317
AvaII	GGWCC	1 cut(s)	249
BanII	GRGCYC	4 cut(s)	237, 521, 605, 763
BbvI	GCAGC	4 cut(s)	146, 333, 630, 727
BccI	CCATC	1 cut(s)	689
BceAI	ACGGC	2 cut(s)	172, 655
BcgI	CGANNNNNNTGC	2 cut(s)	759, 793
BciT130I	CCWGG	6 cut(s)	257, 337, 385, 570, 680, 757
BcnI	CCSGG	3 cut(s)	215, 318, 319
BcoDI	GTCTC	2 cut(s)	48, 578
BfaI	CTAG	1 cut(s)	74
BfoI	RGCGCY	1 cut(s)	18
BisI	GCNGC	7 cut(s)	139, 160, 225, 347, 389, 619, 741
BlsI	GCNGC	7 cut(s)	140, 161, 226, 348, 390, 620, 742
Bme1390I	CCNGG	9 cut(s)	215, 257, 318, 319, 337, 385, 570, 680, 757
Bme18I	GGWCC	1 cut(s)	249
BmeT110I	CYCGRG	2 cut(s)	236, 317
BmgT120I	GGNCC	1 cut(s)	249
BmiI	GGNNCC	3 cut(s)	250, 251, 520
BmrFI	CCNGG	9 cut(s)	215, 257, 318, 319, 337, 385, 570, 680, 757
BmsI	GCATC	2 cut(s)	357, 412
BoxI	GACNNNNGTC	2 cut(s)	114, 441
BpmI	CTGGAG	3 cut(s)	371, 552, 701
BpuEI	CTTGAG	2 cut(s)	460, 769
BpuMI	CCSGG	3 cut(s)	215, 318, 319
BsaI	GGTCTC	2 cut(s)	48, 578
BsaJI	CCNNGG	5 cut(s)	256, 317, 336, 755, 756
BsaWI	WCCGGW	2 cut(s)	36, 659
BsaXI	ACNNNNNCTCC	4 cut(s)	191, 221, 503, 533
Bsc4I	CCNNNNNNNGG	5 cut(s)	75, 220, 342, 453, 454
Bse1I	ACTGG	1 cut(s)	492
Bse3DI	GCAATG	1 cut(s)	398
BseAI	TCCGGA	1 cut(s)	659
BseBI	CCWGG	6 cut(s)	257, 337, 385, 570, 680, 757
BseDI	CCNNGG	5 cut(s)	256, 317, 336, 755, 756
BseGI	GGATG	1 cut(s)	372
BseLI	CCNNNNNNNGG	5 cut(s)	75, 220, 342, 453, 454
BseMI	GCAATG	1 cut(s)	398
BseMII	CTCAG	3 cut(s)	350, 589, 597
BseNI	ACTGG	1 cut(s)	492
BseRI	GAGGAG	3 cut(s)	84, 87, 161
BseXI	GCAGC	4 cut(s)	146, 333, 630, 727
Bsh1236I	CGCG	2 cut(s)	187, 204
Bsh1285I	CGRYCG	2 cut(s)	105, 136
BsiEI	CGRYCG	2 cut(s)	105, 136
BsiHKCI	CYCGRG	2 cut(s)	236, 317
BsiSI	CCGG	6 cut(s)	37, 215, 279, 318, 660, 790
BslFI	GGGAC	5 cut(s)	262, 429, 476, 738, 788
BslI	CCNNNNNNNGG	5 cut(s)	75, 220, 342, 453, 454
BsmAI	GTCTC	2 cut(s)	48, 578
BsmFI	GGGAC	5 cut(s)	262, 429, 476, 738, 788
Bso31I	GGTCTC	2 cut(s)	48, 578
BsoBI	CYCGRG	2 cut(s)	236, 317
Bsp1286I	GDGCHC	4 cut(s)	237, 521, 605, 763
Bsp13I	TCCGGA	1 cut(s)	659
Bsp143I	GATC	3 cut(s)	70, 163, 217
BspACI	CCGC	9 cut(s)	63, 139, 175, 185, 202, 224, 227, 300, 388
BspCNI	CTCAG	3 cut(s)	351, 588, 598
BspEI	TCCGGA	1 cut(s)	659
BspFNI	CGCG	2 cut(s)	187, 204
BspLI	GGNNCC	3 cut(s)	250, 251, 520
BspPI	GGATC	2 cut(s)	158, 225
BspTNI	GGTCTC	2 cut(s)	48, 578
BsrBI	CCGCTC	1 cut(s)	300
BsrDI	GCAATG	1 cut(s)	398
BsrI	ACTGG	1 cut(s)	492
BssECI	CCNNGG	5 cut(s)	256, 317, 336, 755, 756
BssMI	GATC	3 cut(s)	70, 163, 217
Bst2UI	CCWGG	6 cut(s)	257, 337, 385, 570, 680, 757
Bst4CI	ACNGT	2 cut(s)	106, 134
Bst6I	CTCTTC	1 cut(s)	508
BstC8I	GCNNGC	4 cut(s)	333, 489, 716, 745
BstDEI	CTNAG	3 cut(s)	359, 575, 606
BstF5I	GGATG	1 cut(s)	372
BstFNI	CGCG	2 cut(s)	187, 204
BstH2I	RGCGCY	1 cut(s)	18
BstHHI	GCGC	4 cut(s)	17, 189, 206, 623
BstKTI	GATC	3 cut(s)	73, 166, 220
BstMAI	GTCTC	2 cut(s)	48, 578
BstMBI	GATC	3 cut(s)	70, 163, 217
BstMCI	CGRYCG	2 cut(s)	105, 136
BstMWI	GCNNNNNNNGC	4 cut(s)	54, 355, 724, 786
BstNI	CCWGG	6 cut(s)	257, 337, 385, 570, 680, 757
BstNSI	RCATGY	1 cut(s)	431
BstPAI	GACNNNNGTC	2 cut(s)	114, 441
BstSCI	CCNGG	9 cut(s)	213, 255, 316, 317, 335, 383, 568, 678, 755
BstUI	CGCG	2 cut(s)	187, 204
BstV1I	GCAGC	4 cut(s)	146, 333, 630, 727
BstXI	CCANNNNNNTGG	1 cut(s)	263
BtsCI	GGATG	1 cut(s)	372
BtsI	GCAGTG	1 cut(s)	292
BtsIMutI	CAGTG	2 cut(s)	292, 499
Cac8I	GCNNGC	4 cut(s)	333, 489, 716, 745
CfoI	GCGC	4 cut(s)	17, 189, 206, 623
Cfr13I	GGNCC	1 cut(s)	249
Cfr9I	CCCGGG	1 cut(s)	317
CseI	GACGC	1 cut(s)	473
CviAII	CATG	2 cut(s)	428, 737
DdeI	CTNAG	3 cut(s)	359, 575, 606
DpnI	GATC	3 cut(s)	72, 165, 219
DpnII	GATC	3 cut(s)	70, 163, 217
Eam1104I	CTCTTC	1 cut(s)	508
EarI	CTCTTC	1 cut(s)	508
EciI	GGCGGA	1 cut(s)	164
Eco24I	GRGCYC	4 cut(s)	237, 521, 605, 763
Eco31I	GGTCTC	2 cut(s)	48, 578
Eco47I	GGWCC	1 cut(s)	249
Eco47III	AGCGCT	1 cut(s)	16
Eco57I	CTGAAG	1 cut(s)	360
Eco88I	CYCGRG	2 cut(s)	236, 317
EcoO109I	RGGNCCY	1 cut(s)	249
EcoRII	CCWGG	6 cut(s)	255, 335, 383, 568, 678, 755
EcoT38I	GRGCYC	4 cut(s)	237, 521, 605, 763
FaeI	CATG	2 cut(s)	431, 740
FaiI	YATR	7 cut(s)	8, 429, 729, 738, 784, 800, 835
FalI	AAGNNNNNCTT	2 cut(s)	573, 605
FaqI	GGGAC	5 cut(s)	262, 429, 476, 738, 788
FatI	CATG	2 cut(s)	427, 736
FauI	CCCGC	2 cut(s)	192, 293
FblI	GTMKAC	1 cut(s)	636
Fnu4HI	GCNGC	7 cut(s)	139, 160, 225, 347, 389, 619, 741
FokI	GGATG	1 cut(s)	379
FriOI	GRGCYC	4 cut(s)	237, 521, 605, 763
Fsp4HI	GCNGC	7 cut(s)	139, 160, 225, 347, 389, 619, 741
FspBI	CTAG	1 cut(s)	74
GlaI	GCGC	4 cut(s)	16, 188, 205, 622
GluI	GCNGC	7 cut(s)	139, 160, 225, 347, 389, 619, 741
GsuI	CTGGAG	3 cut(s)	371, 552, 701
HaeII	RGCGCY	1 cut(s)	18
HapII	CCGG	6 cut(s)	37, 215, 279, 318, 660, 790
HgaI	GACGC	1 cut(s)	473
HhaI	GCGC	4 cut(s)	17, 189, 206, 623
Hin1II	CATG	2 cut(s)	431, 740
Hin6I	GCGC	4 cut(s)	15, 187, 204, 621
HinP1I	GCGC	4 cut(s)	15, 187, 204, 621
HincII	GTYRAC	2 cut(s)	109, 637
HindII	GTYRAC	2 cut(s)	109, 637
HindIII	AAGCTT	1 cut(s)	704
HinfI	GANTC	4 cut(s)	83, 442, 732, 751
HpaII	CCGG	6 cut(s)	37, 215, 279, 318, 660, 790
Hpy166II	GTNNAC	3 cut(s)	109, 556, 637
Hpy188I	TCNGA	4 cut(s)	22, 102, 154, 379
Hpy188III	TCNNGA	5 cut(s)	264, 475, 581, 590, 660
Hpy8I	GTNNAC	3 cut(s)	109, 556, 637
Hpy99I	CGWCG	2 cut(s)	158, 641
HpyAV	CCTTC	1 cut(s)	384
HpyCH4III	ACNGT	2 cut(s)	106, 134
HpyCH4V	TGCA	3 cut(s)	403, 427, 547
HpyF10VI	GCNNNNNNNGC	4 cut(s)	54, 355, 724, 786
HpyF3I	CTNAG	3 cut(s)	359, 575, 606
Hsp92II	CATG	2 cut(s)	431, 740
HspAI	GCGC	4 cut(s)	15, 187, 204, 621
KflI	GGGWCCC	1 cut(s)	249
Kpn2I	TCCGGA	1 cut(s)	659
Kzo9I	GATC	3 cut(s)	70, 163, 217
LmnI	GCTCC	2 cut(s)	22, 524
Lsp1109I	GCAGC	4 cut(s)	146, 333, 630, 727
LweI	GCATC	2 cut(s)	357, 412
MaeI	CTAG	1 cut(s)	74
MaeIII	GTNAC	1 cut(s)	116
MalI	GATC	3 cut(s)	72, 165, 219
MbiI	CCGCTC	1 cut(s)	300
MboI	GATC	3 cut(s)	70, 163, 217
MboII	GAAGA	1 cut(s)	495
MhlI	GDGCHC	4 cut(s)	237, 521, 605, 763
MluCI	AATT	2 cut(s)	148, 525
MlyI	GAGTC	3 cut(s)	77, 451, 760
MmeI	TCCRAC	2 cut(s)	125, 177
MroI	TCCGGA	1 cut(s)	659
MseI	TTAA	1 cut(s)	650
MslI	CAYNNNNRTG	1 cut(s)	432
MspI	CCGG	6 cut(s)	37, 215, 279, 318, 660, 790
MspR9I	CCNGG	9 cut(s)	215, 257, 318, 319, 337, 385, 570, 680, 757
MvaI	CCWGG	6 cut(s)	257, 337, 385, 570, 680, 757
MvnI	CGCG	2 cut(s)	187, 204
MwoI	GCNNNNNNNGC	4 cut(s)	54, 355, 724, 786
NciI	CCSGG	3 cut(s)	215, 318, 319
NdeII	GATC	3 cut(s)	70, 163, 217
NlaIII	CATG	2 cut(s)	431, 740
NlaIV	GGNNCC	3 cut(s)	250, 251, 520
NmuCI	GTSAC	1 cut(s)	116
NspI	RCATGY	1 cut(s)	431
PaeR7I	CTCGAG	1 cut(s)	236
PasI	CCCWGGG	1 cut(s)	756
PfeI	GAWTC	1 cut(s)	732
PfoI	TCCNGGA	1 cut(s)	213
PkrI	GCNGC	7 cut(s)	140, 161, 226, 348, 390, 620, 742
PleI	GAGTC	3 cut(s)	77, 450, 759
PpsI	GAGTC	3 cut(s)	77, 450, 759
PpuMI	RGGWCCY	1 cut(s)	249
PshAI	GACNNNNGTC	2 cut(s)	114, 441
Psp5II	RGGWCCY	1 cut(s)	249
Psp6I	CCWGG	6 cut(s)	255, 335, 383, 568, 678, 755
PspGI	CCWGG	6 cut(s)	255, 335, 383, 568, 678, 755
PspN4I	GGNNCC	3 cut(s)	250, 251, 520
PspPI	GGNCC	1 cut(s)	249
PspPPI	RGGWCCY	1 cut(s)	249
PspXI	VCTCGAGB	1 cut(s)	236
RseI	CAYNNNNRTG	1 cut(s)	432
SalI	GTCGAC	1 cut(s)	635
SaqAI	TTAA	1 cut(s)	650
SatI	GCNGC	7 cut(s)	139, 160, 225, 347, 389, 619, 741
Sau3AI	GATC	3 cut(s)	70, 163, 217
Sau96I	GGNCC	1 cut(s)	249
SchI	GAGTC	3 cut(s)	77, 451, 760
ScrFI	CCNGG	9 cut(s)	215, 257, 318, 319, 337, 385, 570, 680, 757
SduI	GDGCHC	4 cut(s)	237, 521, 605, 763
SetI	ASST	6 cut(s)	27, 44, 418, 574, 588, 708
SfaNI	GCATC	2 cut(s)	357, 412
Sfr274I	CTCGAG	1 cut(s)	236
SinI	GGWCC	1 cut(s)	249
SlaI	CTCGAG	1 cut(s)	236
SmaI	CCCGGG	1 cut(s)	319
SmiMI	CAYNNNNRTG	1 cut(s)	432
SmlI	CTYRAG	3 cut(s)	236, 439, 748
SmoI	CTYRAG	3 cut(s)	236, 439, 748
Sse9I	AATT	2 cut(s)	148, 525
SsiI	CCGC	9 cut(s)	63, 139, 175, 185, 202, 224, 227, 300, 388
SspMI	CTAG	1 cut(s)	74
StyD4I	CCNGG	9 cut(s)	213, 255, 316, 317, 335, 383, 568, 678, 755
TaaI	ACNGT	2 cut(s)	106, 134
TaqI	TCGA	4 cut(s)	81, 237, 636, 769
TaqII	GACCGA	1 cut(s)	126
TasI	AATT	2 cut(s)	148, 525
TauI	GCSGC	3 cut(s)	141, 227, 391
TfiI	GAWTC	1 cut(s)	732
Tru1I	TTAA	1 cut(s)	650
Tru9I	TTAA	1 cut(s)	650
TscAI	CASTG	2 cut(s)	292, 499
TseFI	GTSAC	1 cut(s)	116
TseI	GCWGC	4 cut(s)	159, 346, 618, 740
Tsp45I	GTSAC	1 cut(s)	116
TspGWI	ACGGA	1 cut(s)	426
TspMI	CCCGGG	1 cut(s)	317
TspRI	CASTG	2 cut(s)	292, 499
VpaK11BI	GGWCC	1 cut(s)	249
XceI	RCATGY	1 cut(s)	431
XcmI	CCANNNNNNNNNTGG	1 cut(s)	260
XhoI	CTCGAG	1 cut(s)	236
XmaI	CCCGGG	1 cut(s)	317
XmiI	GTMKAC	1 cut(s)	636
XspI	CTAG	1 cut(s)	74

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.