Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0005406

Physical Location & Seq

Genomic Coordinates Reverse (-)

61785361 .. 61788312

Gene Structure 2952 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00211330.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGCATCTCTTGCAAGAAGCAAACAAGAAGCCTCCAGGTCTTACTCAAGAGGTCCTTGATGCCTCATTGCCTCGAGTGTTTGAGCTTTTCGGCAACACAGAATTGGGTGTTGAAGGGTTGGTATCAAAAGCATCACTAGATTGCAGTATGTGCCCGGAGAGCATAGTTGTAGATAGTGACACAATCTTCTTCGATTCTATTTCGCGTTCTCTTTGTTCAATCCCTGAACTTTCATTTTTGAGTCCTCTTATGAGTTCTCTTGGCAACAAAAGCGATAATGCAACCAACTCAAGAACAGAGCTCAAGCACCTTTTATGTCATCTGAGCCGGCTCAAGAGTACAATCAAGGAAAGCAAACATTTGTTGCAAAGTCAACAAGGAGTGAAAAGAAAAGGAATGATGAATTGCCATTTTACAAATGCAAAAATATCGAATACGGTTTATTTGTTGATAATGCTTTCAAGAGGGAATATCACCAAGATTTTCATGATCAAGGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001664 GO:0003674 GO:0003824 GO:0004842 GO:0005102 GO:0005109 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007267 GO:0008150 GO:0008152 GO:0008283 GO:0009056 GO:0009057 GO:0009966 GO:0009968 GO:0009987 GO:0010498 GO:0010646 GO:0010648 GO:0016020 GO:0016021 GO:0016055 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0022603 GO:0023051 GO:0023052 GO:0023057 GO:0030111 GO:0030163 GO:0030178 GO:0031224 GO:0031226 GO:0032446 GO:0032801 GO:0035567 GO:0036211 GO:0038018 GO:0043112 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044425 GO:0044459 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051603 GO:0051716 GO:0060070 GO:0060071 GO:0060828 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0071944 GO:0072089 GO:0090090 GO:0090175 GO:0140096 GO:0198738 GO:1901564 GO:1901565 GO:1901575 GO:1905114 GO:1905330 GO:2000026 GO:2000027 GO:2000050 GO:2000051

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

166

Amino Acids

18.41

Weight (kDa)

8.85

Isoelectric Point (pI)

48.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005406)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49850
fragaria_vesca	FvH4_2g04490 FvH4_2g04490
malus_domestica	MD05G1095900.v1.1 MD09G1148100.v1.1 MD10G1102100.v1.1
prunus_persica	Prupe.8G140300_v2.0.a1 Prupe.8G140300_v2.0.a1 Prupe.8G140300_v2.0.a1 Prupe.8G140300_v2.0.a1
pyrus_communis	pycom05g09460 pycom10g08780
rosa_chinensis	RchiOBHm_Chr6g0253981
rosa_laevigata	RLG00000014951
rosa_multiflora	Rmu_sc0001716.1_g000017
rosa_roxburghii	Rroxscaffold_7G00211330
rosa_rugosa	Rorug04G0080100 Rorug05G0548700
rosa_samantha	Rh2BG479300 Rh5DG329300 Rh6AG065200 Rh6AG082700 Rh6BG058200 Rh6CG058200 Rh6CG058300 Rh6DG055100 Rh6DG069100 Rh7CG154800
rosa_wichuraiana	Rw6G005740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	205
AfaI	GTAC	1 cut(s)	340
AgsI	TTSAA	3 cut(s)	113, 219, 462
AjnI	CCWGG	1 cut(s)	34
AluBI	AGCT	2 cut(s)	85, 301
AluI	AGCT	2 cut(s)	85, 301
Alw21I	GWGCWC	1 cut(s)	303
Ama87I	CYCGRG	1 cut(s)	72
AspS9I	GGNCC	1 cut(s)	52
AsuC2I	CCSGG	1 cut(s)	155
AsuHPI	GGTGA	1 cut(s)	466
AvaI	CYCGRG	1 cut(s)	72
AvaII	GGWCC	1 cut(s)	52
BaeGI	GKGCMC	1 cut(s)	155
BanII	GRGCYC	1 cut(s)	303
Bbv12I	GWGCWC	1 cut(s)	303
BcgI	CGANNNNNNTGC	2 cut(s)	411, 445
BciT130I	CCWGG	1 cut(s)	36
BclI	TGATCA	1 cut(s)	489
BcnI	CCSGG	1 cut(s)	155
BfaI	CTAG	1 cut(s)	137
Bme1390I	CCNGG	2 cut(s)	36, 155
Bme18I	GGWCC	1 cut(s)	52
BmeT110I	CYCGRG	1 cut(s)	72
BmgT120I	GGNCC	1 cut(s)	52
BmrFI	CCNGG	2 cut(s)	36, 155
BmsI	GCATC	3 cut(s)	13, 49, 140
BpmI	CTGGAG	1 cut(s)	18
BpuEI	CTTGAG	4 cut(s)	30, 274, 287, 317
BpuMI	CCSGG	1 cut(s)	155
Bse118I	RCCGGY	1 cut(s)	327
Bse3DI	GCAATG	1 cut(s)	65
BseBI	CCWGG	1 cut(s)	36
BseMI	GCAATG	1 cut(s)	65
BseMII	CTCAG	1 cut(s)	314
BseSI	GKGCMC	1 cut(s)	155
Bsh1236I	CGCG	1 cut(s)	205
BsiHKAI	GWGCWC	1 cut(s)	303
BsiHKCI	CYCGRG	1 cut(s)	72
BsiSI	CCGG	2 cut(s)	155, 328
BsoBI	CYCGRG	1 cut(s)	72
Bsp1286I	GDGCHC	2 cut(s)	155, 303
Bsp143I	GATC	1 cut(s)	489
BspCNI	CTCAG	1 cut(s)	315
BspFNI	CGCG	1 cut(s)	205
BspHI	TCATGA	1 cut(s)	486
BsrDI	GCAATG	1 cut(s)	65
BsrFI	RCCGGY	1 cut(s)	327
BssAI	RCCGGY	1 cut(s)	327
BssMI	GATC	1 cut(s)	489
Bst2UI	CCWGG	1 cut(s)	36
Bst4CI	ACNGT	1 cut(s)	439
BstAPI	GCANNNNNTGC	2 cut(s)	10, 150
BstC8I	GCNNGC	1 cut(s)	329
BstDEI	CTNAG	1 cut(s)	323
BstFNI	CGCG	1 cut(s)	205
BstKTI	GATC	1 cut(s)	492
BstMBI	GATC	1 cut(s)	489
BstMWI	GCNNNNNNNGC	4 cut(s)	10, 150, 159, 270
BstNI	CCWGG	1 cut(s)	36
BstSCI	CCNGG	2 cut(s)	34, 153
BstSLI	GKGCMC	1 cut(s)	155
BstUI	CGCG	1 cut(s)	205
Cac8I	GCNNGC	1 cut(s)	329
CciI	TCATGA	1 cut(s)	486
Cfr10I	RCCGGY	1 cut(s)	327
Cfr13I	GGNCC	1 cut(s)	52
Csp6I	GTAC	1 cut(s)	339
CviAII	CATG	1 cut(s)	487
CviJI	RGCY	5 cut(s)	31, 85, 301, 327, 331
CviKI_1	RGCY	5 cut(s)	31, 85, 301, 327, 331
CviQI	GTAC	1 cut(s)	339
DdeI	CTNAG	1 cut(s)	323
DpnI	GATC	1 cut(s)	491
DpnII	GATC	1 cut(s)	489
Ecl136II	GAGCTC	1 cut(s)	301
Eco24I	GRGCYC	1 cut(s)	303
Eco47I	GGWCC	1 cut(s)	52
Eco53kI	GAGCTC	1 cut(s)	301
Eco88I	CYCGRG	1 cut(s)	72
EcoICRI	GAGCTC	1 cut(s)	301
EcoO109I	RGGNCCY	1 cut(s)	52
EcoRII	CCWGG	1 cut(s)	34
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	303
FaeI	CATG	1 cut(s)	490
FaiI	YATR	5 cut(s)	149, 164, 251, 316, 488
FalI	AAGNNNNNCTT	2 cut(s)	39, 71
FatI	CATG	1 cut(s)	486
FbaI	TGATCA	1 cut(s)	489
FriOI	GRGCYC	1 cut(s)	303
FspBI	CTAG	1 cut(s)	137
GsuI	CTGGAG	1 cut(s)	18
HapII	CCGG	2 cut(s)	155, 328
Hin1II	CATG	1 cut(s)	490
HincII	GTYRAC	1 cut(s)	374
HindII	GTYRAC	1 cut(s)	374
HinfI	GANTC	2 cut(s)	194, 241
HpaII	CCGG	2 cut(s)	155, 328
HphI	GGTGA	1 cut(s)	466
Hpy166II	GTNNAC	1 cut(s)	374
Hpy188I	TCNGA	1 cut(s)	324
Hpy188III	TCNNGA	5 cut(s)	47, 291, 334, 462, 487
Hpy8I	GTNNAC	1 cut(s)	374
HpyAV	CCTTC	1 cut(s)	107
HpyCH4III	ACNGT	1 cut(s)	439
HpyCH4V	TGCA	6 cut(s)	4, 13, 144, 281, 367, 422
HpyF10VI	GCNNNNNNNGC	4 cut(s)	10, 150, 159, 270
HpyF3I	CTNAG	1 cut(s)	323
Hsp92II	CATG	1 cut(s)	490
KroI	GCCGGC	1 cut(s)	327
KroNI	GCCGGC	1 cut(s)	329
Ksp22I	TGATCA	1 cut(s)	489
Kzo9I	GATC	1 cut(s)	489
LpnPI	CCDG	5 cut(s)	21, 48, 168, 237, 341
LweI	GCATC	3 cut(s)	13, 49, 140
MaeI	CTAG	1 cut(s)	137
MaeIII	GTNAC	1 cut(s)	176
MalI	GATC	1 cut(s)	491
MboI	GATC	1 cut(s)	489
MboII	GAAGA	2 cut(s)	178, 181
MhlI	GDGCHC	2 cut(s)	155, 303
MluCI	AATT	2 cut(s)	101, 403
MlyI	GAGTC	1 cut(s)	250
MnlI	CCTC	6 cut(s)	42, 43, 73, 81, 255, 458
Mph1103I	ATGCAT	1 cut(s)	6
MroNI	GCCGGC	1 cut(s)	327
MspI	CCGG	2 cut(s)	155, 328
MspR9I	CCNGG	2 cut(s)	36, 155
MvaI	CCWGG	1 cut(s)	36
MvnI	CGCG	1 cut(s)	205
MwoI	GCNNNNNNNGC	4 cut(s)	10, 150, 159, 270
NaeI	GCCGGC	1 cut(s)	329
NciI	CCSGG	1 cut(s)	155
NdeII	GATC	1 cut(s)	489
NgoMIV	GCCGGC	1 cut(s)	327
NlaIII	CATG	1 cut(s)	490
NmuCI	GTSAC	1 cut(s)	176
NsiI	ATGCAT	1 cut(s)	6
PaeR7I	CTCGAG	1 cut(s)	72
PagI	TCATGA	1 cut(s)	486
PdiI	GCCGGC	1 cut(s)	329
PfeI	GAWTC	1 cut(s)	194
PleI	GAGTC	1 cut(s)	249
PpsI	GAGTC	1 cut(s)	249
PpuMI	RGGWCCY	1 cut(s)	52
Psp124BI	GAGCTC	1 cut(s)	303
Psp5II	RGGWCCY	1 cut(s)	52
Psp6I	CCWGG	1 cut(s)	34
PspGI	CCWGG	1 cut(s)	34
PspPI	GGNCC	1 cut(s)	52
PspPPI	RGGWCCY	1 cut(s)	52
PspXI	VCTCGAGB	1 cut(s)	72
RsaI	GTAC	1 cut(s)	340
RsaNI	GTAC	1 cut(s)	339
SacI	GAGCTC	1 cut(s)	303
Sau3AI	GATC	1 cut(s)	489
Sau96I	GGNCC	1 cut(s)	52
SchI	GAGTC	1 cut(s)	250
ScrFI	CCNGG	2 cut(s)	36, 155
SduI	GDGCHC	2 cut(s)	155, 303
SetI	ASST	6 cut(s)	40, 54, 87, 303, 312, 498
SfaNI	GCATC	3 cut(s)	13, 49, 140
Sfr274I	CTCGAG	1 cut(s)	72
SinI	GGWCC	1 cut(s)	52
SlaI	CTCGAG	1 cut(s)	72
SmlI	CTYRAG	5 cut(s)	45, 72, 289, 302, 332
SmoI	CTYRAG	5 cut(s)	45, 72, 289, 302, 332
Sse9I	AATT	2 cut(s)	101, 403
SspMI	CTAG	1 cut(s)	137
SstI	GAGCTC	1 cut(s)	303
StyD4I	CCNGG	2 cut(s)	34, 153
TaaI	ACNGT	1 cut(s)	439
TaqI	TCGA	3 cut(s)	73, 192, 431
TasI	AATT	2 cut(s)	101, 403
TatI	WGTACW	1 cut(s)	338
TfiI	GAWTC	1 cut(s)	194
TseFI	GTSAC	1 cut(s)	176
Tsp45I	GTSAC	1 cut(s)	176
TspDTI	ATGAA	3 cut(s)	222, 416, 475
VpaK11BI	GGWCC	1 cut(s)	52
XhoI	CTCGAG	1 cut(s)	72
XspI	CTAG	1 cut(s)	137
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.