FvH4_2g04480

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0015087
Physical Location & Seq
Forward (+)
3449029 .. 3450347
1319 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g04480.t1

Sequence Viewer

Length: 384 bp
ATGTTATTGGGTAACACTTACGCTATGACAAGAGGAGGGGTTGCAAAATCAAAGATATTTCTTCTCAGTACATGCCGGGTAGCTAAGCGAGTTGAACAACGCTACTTCAGCAAGCTAAGTGGAACTGCTGAAGGAGTAAGCAGAAAGGAGGAGAGTCGAAAGCGGCCGGAAATGGAGAGCCCTAGTACATGGAGCAGCAGCTGGGTTCCGGATCCACGCACCGGAATATATTTTCCGAAAGGGCATGAACGGGTGATGGATGATATCCCTAAAGGAGCAGCTTCCCTTAATAACCAGACATTCTGGCTGAGGAACCTGGACGGTGTCCTTGAGAAACCCGACCCGGATACTTCCCCTGATCATTACTACCAAATGCGTATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_3

Protein Analysis

128

Amino Acids

14.5

Weight (kDa)

9.48

Isoelectric Point (pI)

38.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_3a PF03242 40 - 96 3.5e-07 Late embryogenesis abundant protein (LEA_3a subfamily)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015087)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G19550
fragaria_vesca FvH4_2g04480
malus_domestica MD05G1096000.v1.1 MD10G1102200.v1.1
prunus_persica Prupe.8G140400_v2.0.a1
pyrus_communis pycom05g09470
rosa_chinensis RchiOBHm_Chr6g0253971
rosa_laevigata RLG00000014952
rosa_multiflora Rmu_sc0001716.1_g000012
rosa_roxburghii Rroxscaffold_7G00211360
rosa_rugosa Rorug05G0548700
rosa_samantha Rh6AG065000 Rh6BG058100 Rh6CG058100 Rh6DG055000
rosa_wichuraiana Rw6G005730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 208
AciI CCGC 1 cut(s) 163
AclWI GGATC 2 cut(s) 206, 219
AcoI YGGCCR 1 cut(s) 164
AcuI CTGAAG 2 cut(s) 91, 150
AfaI GTAC 2 cut(s) 70, 187
AfiI CCNNNNNNNGG 1 cut(s) 221
AgsI TTSAA 1 cut(s) 95
AjnI CCWGG 1 cut(s) 315
AluBI AGCT 4 cut(s) 83, 115, 201, 281
AluI AGCT 4 cut(s) 83, 115, 201, 281
AlwI GGATC 2 cut(s) 206, 219
AlwNI CAGNNNCTG 1 cut(s) 201
Aor13HI TCCGGA 1 cut(s) 208
AoxI GGCC 1 cut(s) 164
ApeKI GCWGC 3 cut(s) 195, 198, 278
AsuC2I CCSGG 2 cut(s) 77, 344
AsuHPI GGTGA 1 cut(s) 265
BamHI GGATCC 1 cut(s) 211
BanII GRGCYC 1 cut(s) 182
BbvCI CCTCAGC 1 cut(s) 308
BbvI GCAGC 3 cut(s) 207, 210, 290
BccI CCATC 1 cut(s) 250
BciT130I CCWGG 1 cut(s) 317
BciVI GTATCC 1 cut(s) 340
BclI TGATCA 1 cut(s) 358
BcnI CCSGG 2 cut(s) 77, 344
BfaI CTAG 1 cut(s) 183
BfuI GTATCC 1 cut(s) 340
BisI GCNGC 4 cut(s) 164, 196, 199, 279
BlpI GCTNAGC 1 cut(s) 84
BlsI GCNGC 4 cut(s) 165, 197, 200, 280
Bme1390I CCNGG 3 cut(s) 77, 317, 344
BmiI GGNNCC 3 cut(s) 207, 213, 314
BmrFI CCNGG 3 cut(s) 77, 317, 344
Bpu10I CCTNAGC 1 cut(s) 308
Bpu1102I GCTNAGC 1 cut(s) 84
BpuEI CTTGAG 1 cut(s) 350
BpuMI CCSGG 2 cut(s) 77, 344
BsaWI WCCGGW 2 cut(s) 208, 221
Bsc4I CCNNNNNNNGG 1 cut(s) 221
BseAI TCCGGA 1 cut(s) 208
BseBI CCWGG 1 cut(s) 317
BseGI GGATG 1 cut(s) 265
BseLI CCNNNNNNNGG 1 cut(s) 221
BseMII CTCAG 2 cut(s) 79, 299
BseRI GAGGAG 2 cut(s) 48, 164
BseX3I CGGCCG 1 cut(s) 164
BseXI GCAGC 3 cut(s) 207, 210, 290
BseYI CCCAGC 1 cut(s) 201
Bsh1285I CGRYCG 1 cut(s) 167
BshFI GGCC 1 cut(s) 166
BsiEI CGRYCG 1 cut(s) 167
BsiSI CCGG 5 cut(s) 76, 167, 209, 222, 344
BslI CCNNNNNNNGG 1 cut(s) 221
BsnI GGCC 1 cut(s) 166
Bsp1286I GDGCHC 1 cut(s) 182
Bsp13I TCCGGA 1 cut(s) 208
Bsp143I GATC 2 cut(s) 211, 358
Bsp1720I GCTNAGC 1 cut(s) 84
BspACI CCGC 1 cut(s) 163
BspANI GGCC 1 cut(s) 166
BspCNI CTCAG 2 cut(s) 78, 300
BspEI TCCGGA 1 cut(s) 208
BspLI GGNNCC 3 cut(s) 207, 213, 314
BspPI GGATC 2 cut(s) 206, 219
BssMI GATC 2 cut(s) 211, 358
Bst2UI CCWGG 1 cut(s) 317
Bst4CI ACNGT 1 cut(s) 323
BstC8I GCNNGC 1 cut(s) 113
BstDEI CTNAG 4 cut(s) 65, 84, 116, 308
BstF5I GGATG 1 cut(s) 265
BstKTI GATC 2 cut(s) 214, 361
BstMBI GATC 2 cut(s) 211, 358
BstMCI CGRYCG 1 cut(s) 167
BstMWI GCNNNNNNNGC 1 cut(s) 108
BstNI CCWGG 1 cut(s) 317
BstNSI RCATGY 1 cut(s) 75
BstSCI CCNGG 3 cut(s) 75, 315, 342
BstV1I GCAGC 3 cut(s) 207, 210, 290
BstX2I RGATCY 1 cut(s) 211
BstYI RGATCY 1 cut(s) 211
BstZI CGGCCG 1 cut(s) 164
BsuI GTATCC 1 cut(s) 340
BsuRI GGCC 1 cut(s) 166
BtsCI GGATG 1 cut(s) 265
Cac8I GCNNGC 1 cut(s) 113
CaiI CAGNNNCTG 1 cut(s) 201
Csp6I GTAC 2 cut(s) 69, 186
CspCI CAANNNNNGTGG 2 cut(s) 100, 135
CviAII CATG 3 cut(s) 72, 189, 245
CviJI RGCY 7 cut(s) 83, 115, 166, 180, 201, 281, 307
CviKI_1 RGCY 7 cut(s) 83, 115, 166, 180, 201, 281, 307
CviQI GTAC 2 cut(s) 69, 186
DdeI CTNAG 4 cut(s) 65, 84, 116, 308
DpnI GATC 2 cut(s) 213, 360
DpnII GATC 2 cut(s) 211, 358
EaeI YGGCCR 1 cut(s) 164
EagI CGGCCG 1 cut(s) 164
EclXI CGGCCG 1 cut(s) 164
Eco24I GRGCYC 1 cut(s) 182
Eco32I GATATC 1 cut(s) 265
Eco52I CGGCCG 1 cut(s) 164
Eco57I CTGAAG 2 cut(s) 91, 150
EcoRII CCWGG 1 cut(s) 315
EcoRV GATATC 1 cut(s) 265
EcoT38I GRGCYC 1 cut(s) 182
FaeI CATG 3 cut(s) 75, 192, 248
FaiI YATR 6 cut(s) 26, 73, 190, 229, 246, 380
FatI CATG 3 cut(s) 71, 188, 244
FbaI TGATCA 1 cut(s) 358
Fnu4HI GCNGC 4 cut(s) 164, 196, 199, 279
FokI GGATG 1 cut(s) 272
FriOI GRGCYC 1 cut(s) 182
Fsp4HI GCNGC 4 cut(s) 164, 196, 199, 279
FspBI CTAG 1 cut(s) 183
GluI GCNGC 4 cut(s) 164, 196, 199, 279
GsaI CCCAGC 1 cut(s) 205
HaeIII GGCC 1 cut(s) 166
HapII CCGG 5 cut(s) 76, 167, 209, 222, 344
Hin1II CATG 3 cut(s) 75, 192, 248
HinfI GANTC 1 cut(s) 154
HpaII CCGG 5 cut(s) 76, 167, 209, 222, 344
HphI GGTGA 1 cut(s) 265
Hpy188I TCNGA 1 cut(s) 237
Hpy188III TCNNGA 1 cut(s) 209
HpyAV CCTTC 1 cut(s) 125
HpyCH4III ACNGT 1 cut(s) 323
HpyCH4V TGCA 1 cut(s) 44
HpyF10VI GCNNNNNNNGC 1 cut(s) 108
HpyF3I CTNAG 4 cut(s) 65, 84, 116, 308
Hsp92II CATG 3 cut(s) 75, 192, 248
Kpn2I TCCGGA 1 cut(s) 208
Ksp22I TGATCA 1 cut(s) 358
Kzo9I GATC 2 cut(s) 211, 358
LmnI GCTCC 2 cut(s) 192, 275
Lsp1109I GCAGC 3 cut(s) 207, 210, 290
MaeI CTAG 1 cut(s) 183
MaeIII GTNAC 1 cut(s) 11
MalI GATC 2 cut(s) 213, 360
MboI GATC 2 cut(s) 211, 358
MboII GAAGA 1 cut(s) 53
MflI RGATCY 1 cut(s) 211
MhlI GDGCHC 1 cut(s) 182
MlyI GAGTC 1 cut(s) 163
MnlI CCTC 4 cut(s) 26, 29, 142, 303
MroI TCCGGA 1 cut(s) 208
MseI TTAA 1 cut(s) 288
MspA1I CMGCKG 1 cut(s) 201
MspI CCGG 5 cut(s) 76, 167, 209, 222, 344
MspR9I CCNGG 3 cut(s) 77, 317, 344
MvaI CCWGG 1 cut(s) 317
MwoI GCNNNNNNNGC 1 cut(s) 108
NciI CCSGG 2 cut(s) 77, 344
NdeII GATC 2 cut(s) 211, 358
NlaIII CATG 3 cut(s) 75, 192, 248
NlaIV GGNNCC 3 cut(s) 207, 213, 314
NspI RCATGY 1 cut(s) 75
PflFI GACNNNGTC 1 cut(s) 323
PkrI GCNGC 4 cut(s) 165, 197, 200, 280
PleI GAGTC 1 cut(s) 162
PpsI GAGTC 1 cut(s) 162
Psp6I CCWGG 1 cut(s) 315
PspFI CCCAGC 1 cut(s) 201
PspGI CCWGG 1 cut(s) 315
PspN4I GGNNCC 3 cut(s) 207, 213, 314
PstNI CAGNNNCTG 1 cut(s) 201
PsuI RGATCY 1 cut(s) 211
PsyI GACNNNGTC 1 cut(s) 323
PvuII CAGCTG 1 cut(s) 201
RsaI GTAC 2 cut(s) 70, 187
RsaNI GTAC 2 cut(s) 69, 186
SaqAI TTAA 1 cut(s) 288
SatI GCNGC 4 cut(s) 164, 196, 199, 279
Sau3AI GATC 2 cut(s) 211, 358
SchI GAGTC 1 cut(s) 163
ScrFI CCNGG 3 cut(s) 77, 317, 344
SduI GDGCHC 1 cut(s) 182
SetI ASST 5 cut(s) 85, 117, 203, 283, 318
SmlI CTYRAG 1 cut(s) 329
SmoI CTYRAG 1 cut(s) 329
SsiI CCGC 1 cut(s) 163
SspMI CTAG 1 cut(s) 183
StyD4I CCNGG 3 cut(s) 75, 315, 342
TaaI ACNGT 1 cut(s) 323
TaqI TCGA 1 cut(s) 157
TatI WGTACW 2 cut(s) 68, 185
TauI GCSGC 1 cut(s) 166
Tru1I TTAA 1 cut(s) 288
Tru9I TTAA 1 cut(s) 288
TseI GCWGC 3 cut(s) 195, 198, 278
TspDTI ATGAA 1 cut(s) 261
Tth111I GACNNNGTC 1 cut(s) 323
XceI RCATGY 1 cut(s) 75
XspI CTAG 1 cut(s) 183
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.