Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0015087

Physical Location & Seq

Genomic Coordinates Reverse (-)

15872090 .. 15873058

Gene Structure 969 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G140400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGACAAGAGGCAGCGGGGTGGCAAAATCAAAGATGTTTCTGGTTAGGGAAGCTAAGAGAGTGGATCATCAACGTCAATTCAGCAAGATGAAGGGAGCTGCAGAGAAAATTTCAAGCAGAAATGAGAGTGACAGTGAGGAGACTGGTAGTGGCAGCCCATCATGGATGTGCAACTGGGTTCCACATCCAAGAACAGGAATATATGTTCCCAAAGGGCATGAAGGGGTGATGGATGATGTCCCCAAGGAAGCTGCTTCTCTCAACCAGACTTTCTGGCTCCGGAACGTCGATGGAGTACTCGAGAAACCCGACCCGGACACTTCTCCGGATCATTACTATCGGTACATGCATATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_3

Protein Analysis

119

Amino Acids

13.41

Weight (kDa)

7.9

Isoelectric Point (pI)

47.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015087)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19550
fragaria_vesca	FvH4_2g04480
malus_domestica	MD05G1096000.v1.1 MD10G1102200.v1.1
prunus_persica	Prupe.8G140400_v2.0.a1
pyrus_communis	pycom05g09470
rosa_chinensis	RchiOBHm_Chr6g0253971
rosa_laevigata	RLG00000014952
rosa_multiflora	Rmu_sc0001716.1_g000012
rosa_roxburghii	Rroxscaffold_7G00211360
rosa_rugosa	Rorug05G0548700
rosa_samantha	Rh6AG065000 Rh6BG058100 Rh6CG058100 Rh6DG055000
rosa_wichuraiana	Rw6G005730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	2 cut(s)	279, 325
AciI	CCGC	1 cut(s)	15
AclWI	GGATC	2 cut(s)	72, 336
AcsI	RAATTY	1 cut(s)	108
AfaI	GTAC	2 cut(s)	297, 344
AfiI	CCNNNNNNNGG	1 cut(s)	194
AgsI	TTSAA	1 cut(s)	114
AloI	GAACNNNNNNTCC	2 cut(s)	189, 221
AluBI	AGCT	3 cut(s)	53, 98, 251
AluI	AGCT	3 cut(s)	53, 98, 251
Alw26I	GTCTC	1 cut(s)	134
AlwI	GGATC	2 cut(s)	72, 336
Ama87I	CYCGRG	1 cut(s)	299
Aor13HI	TCCGGA	2 cut(s)	279, 325
ApeKI	GCWGC	4 cut(s)	12, 98, 153, 251
ApoI	RAATTY	1 cut(s)	108
AsuC2I	CCSGG	1 cut(s)	314
AsuHPI	GGTGA	1 cut(s)	238
AvaI	CYCGRG	1 cut(s)	299
BbvI	GCAGC	4 cut(s)	24, 85, 165, 238
BccI	CCATC	3 cut(s)	166, 223, 284
BcnI	CCSGG	1 cut(s)	314
BcoDI	GTCTC	1 cut(s)	134
BfmI	CTRYAG	1 cut(s)	99
BisI	GCNGC	4 cut(s)	13, 99, 154, 252
BlsI	GCNGC	4 cut(s)	14, 100, 155, 253
BmcAI	AGTACT	1 cut(s)	297
Bme1390I	CCNGG	1 cut(s)	314
BmeT110I	CYCGRG	1 cut(s)	299
BmiI	GGNNCC	2 cut(s)	180, 278
BmrFI	CCNGG	1 cut(s)	314
BmrI	ACTGGG	1 cut(s)	184
BmuI	ACTGGG	1 cut(s)	184
BpuMI	CCSGG	1 cut(s)	314
BsaJI	CCNNGG	1 cut(s)	243
BsaWI	WCCGGW	2 cut(s)	279, 325
Bsc4I	CCNNNNNNNGG	1 cut(s)	194
Bse1I	ACTGG	2 cut(s)	148, 179
BseAI	TCCGGA	2 cut(s)	279, 325
BseDI	CCNNGG	1 cut(s)	243
BseGI	GGATG	3 cut(s)	171, 184, 238
BseLI	CCNNNNNNNGG	1 cut(s)	194
BseNI	ACTGG	2 cut(s)	148, 179
BseRI	GAGGAG	1 cut(s)	152
BseXI	GCAGC	4 cut(s)	24, 85, 165, 238
BsiHKCI	CYCGRG	1 cut(s)	299
BsiSI	CCGG	3 cut(s)	280, 314, 326
BslFI	GGGAC	1 cut(s)	224
BslI	CCNNNNNNNGG	1 cut(s)	194
BsmAI	GTCTC	1 cut(s)	134
BsmFI	GGGAC	1 cut(s)	224
BsoBI	CYCGRG	1 cut(s)	299
Bsp13I	TCCGGA	2 cut(s)	279, 325
Bsp143I	GATC	2 cut(s)	64, 328
BspACI	CCGC	1 cut(s)	15
BspEI	TCCGGA	2 cut(s)	279, 325
BspLI	GGNNCC	2 cut(s)	180, 278
BspMAI	CTGCAG	1 cut(s)	103
BspPI	GGATC	2 cut(s)	72, 336
BsrI	ACTGG	2 cut(s)	148, 179
BssECI	CCNNGG	1 cut(s)	243
BssMI	GATC	2 cut(s)	64, 328
BssT1I	CCWWGG	1 cut(s)	243
Bst4CI	ACNGT	1 cut(s)	134
BstDEI	CTNAG	1 cut(s)	54
BstF5I	GGATG	3 cut(s)	171, 184, 238
BstKTI	GATC	2 cut(s)	67, 331
BstMAI	GTCTC	1 cut(s)	134
BstMBI	GATC	2 cut(s)	64, 328
BstNSI	RCATGY	1 cut(s)	349
BstSCI	CCNGG	1 cut(s)	312
BstSFI	CTRYAG	1 cut(s)	99
BstV1I	GCAGC	4 cut(s)	24, 85, 165, 238
BtsCI	GGATG	3 cut(s)	171, 184, 238
BtsIMutI	CAGTG	1 cut(s)	139
Csp6I	GTAC	2 cut(s)	296, 343
CviAII	CATG	3 cut(s)	162, 218, 346
CviJI	RGCY	5 cut(s)	53, 98, 156, 251, 277
CviKI_1	RGCY	5 cut(s)	53, 98, 156, 251, 277
CviQI	GTAC	2 cut(s)	296, 343
DdeI	CTNAG	1 cut(s)	54
DpnI	GATC	2 cut(s)	66, 330
DpnII	GATC	2 cut(s)	64, 328
Eco130I	CCWWGG	1 cut(s)	243
Eco88I	CYCGRG	1 cut(s)	299
EcoT14I	CCWWGG	1 cut(s)	243
EcoT22I	ATGCAT	1 cut(s)	351
ErhI	CCWWGG	1 cut(s)	243
FaeI	CATG	3 cut(s)	165, 221, 349
FaiI	YATR	7 cut(s)	163, 202, 204, 219, 347, 351, 353
FaqI	GGGAC	1 cut(s)	224
FatI	CATG	3 cut(s)	161, 217, 345
FauI	CCCGC	1 cut(s)	8
FauNDI	CATATG	1 cut(s)	351
Fnu4HI	GCNGC	4 cut(s)	13, 99, 154, 252
FokI	GGATG	3 cut(s)	171, 178, 245
Fsp4HI	GCNGC	4 cut(s)	13, 99, 154, 252
GluI	GCNGC	4 cut(s)	13, 99, 154, 252
HapII	CCGG	3 cut(s)	280, 314, 326
Hin1II	CATG	3 cut(s)	165, 221, 349
HpaII	CCGG	3 cut(s)	280, 314, 326
HphI	GGTGA	1 cut(s)	238
Hpy188III	TCNNGA	3 cut(s)	280, 301, 326
Hpy99I	CGWCG	1 cut(s)	290
HpyAV	CCTTC	2 cut(s)	85, 215
HpyCH4III	ACNGT	1 cut(s)	134
HpyCH4IV	ACGT	2 cut(s)	73, 285
HpyCH4V	TGCA	3 cut(s)	101, 171, 349
HpyF3I	CTNAG	1 cut(s)	54
HpySE526I	ACGT	2 cut(s)	73, 285
Hsp92II	CATG	3 cut(s)	165, 221, 349
Kpn2I	TCCGGA	2 cut(s)	279, 325
Kzo9I	GATC	2 cut(s)	64, 328
LmnI	GCTCC	2 cut(s)	95, 282
LpnPI	CCDG	9 cut(s)	26, 129, 160, 180, 259, 278, 293, 327, 339
Lsp1109I	GCAGC	4 cut(s)	24, 85, 165, 238
MaeII	ACGT	2 cut(s)	73, 285
MaeIII	GTNAC	1 cut(s)	128
MalI	GATC	2 cut(s)	66, 330
MboI	GATC	2 cut(s)	64, 328
MluCI	AATT	2 cut(s)	77, 108
MnlI	CCTC	1 cut(s)	130
Mph1103I	ATGCAT	1 cut(s)	351
MroI	TCCGGA	2 cut(s)	279, 325
MslI	CAYNNNNRTG	2 cut(s)	166, 350
MspA1I	CMGCKG	1 cut(s)	15
MspI	CCGG	3 cut(s)	280, 314, 326
MspR9I	CCNGG	1 cut(s)	314
NciI	CCSGG	1 cut(s)	314
NdeI	CATATG	1 cut(s)	351
NdeII	GATC	2 cut(s)	64, 328
NlaIII	CATG	3 cut(s)	165, 221, 349
NlaIV	GGNNCC	2 cut(s)	180, 278
NmuCI	GTSAC	1 cut(s)	128
NsiI	ATGCAT	1 cut(s)	351
NspI	RCATGY	1 cut(s)	349
PaeR7I	CTCGAG	1 cut(s)	299
PcsI	WCGNNNNNNNCGW	1 cut(s)	306
PkrI	GCNGC	4 cut(s)	14, 100, 155, 253
PspN4I	GGNNCC	2 cut(s)	180, 278
PstI	CTGCAG	1 cut(s)	103
RsaI	GTAC	2 cut(s)	297, 344
RsaNI	GTAC	2 cut(s)	296, 343
RseI	CAYNNNNRTG	2 cut(s)	166, 350
SatI	GCNGC	4 cut(s)	13, 99, 154, 252
Sau3AI	GATC	2 cut(s)	64, 328
ScaI	AGTACT	1 cut(s)	297
ScrFI	CCNGG	1 cut(s)	314
SetI	ASST	5 cut(s)	55, 76, 100, 253, 288
SfcI	CTRYAG	1 cut(s)	99
Sfr274I	CTCGAG	1 cut(s)	299
SlaI	CTCGAG	1 cut(s)	299
SmiMI	CAYNNNNRTG	2 cut(s)	166, 350
SmlI	CTYRAG	1 cut(s)	299
SmoI	CTYRAG	1 cut(s)	299
Sse9I	AATT	2 cut(s)	77, 108
SsiI	CCGC	1 cut(s)	15
StyD4I	CCNGG	1 cut(s)	312
StyI	CCWWGG	1 cut(s)	243
TaaI	ACNGT	1 cut(s)	134
TaiI	ACGT	2 cut(s)	76, 288
TaqI	TCGA	2 cut(s)	288, 300
TasI	AATT	2 cut(s)	77, 108
TatI	WGTACW	1 cut(s)	295
TscAI	CASTG	1 cut(s)	139
TseFI	GTSAC	1 cut(s)	128
TseI	GCWGC	4 cut(s)	12, 98, 153, 251
Tsp45I	GTSAC	1 cut(s)	128
TspDTI	ATGAA	2 cut(s)	104, 234
TspRI	CASTG	1 cut(s)	139
XapI	RAATTY	1 cut(s)	108
XceI	RCATGY	1 cut(s)	349
XhoI	CTCGAG	1 cut(s)	299
ZrmI	AGTACT	1 cut(s)	297
Zsp2I	ATGCAT	1 cut(s)	351

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.