pycom05g09470

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0015087
Physical Location & Seq
Reverse (-)
12676258 .. 12676902
645 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g09470.1

Sequence Viewer

Length: 402 bp
ATGCTGATGGCCATGACGAGAGGCGGGGTTGCGAAATCAAAGATGTTTATGCTTAGGGAAGCTAAGCACGCGCAAGGAGATCATCGACGCCATTTCAGCAGCAAGCTGAGGGGAGCTGCAGAAAACATATCAAGCAAAATGGTTAAGAGTGATAGTGAGGATACTGACATGATGGAAAGTGAGACTGGCAGTAATAGTTCATCTTCATGGAGGTGCAACTGGGTGCCACATCCAAGAACAGGAATATACGTTCCGAAAGGGCATGAAAAGGTCATGGATGATGTGCCTAAGGGAGCTGCTTCTCTTAAGCAGACTTTCTGGCTCAGGAACGTCGACGGAGTACTTGAGAAACCCGACCCGGATACTCCTCCTGAGCATTACTATCACTACATGCATAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_3

Protein Analysis

134

Amino Acids

15.14

Weight (kDa)

9.01

Isoelectric Point (pI)

57.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_3a PF03242 28 - 103 1.2e-07 Late embryogenesis abundant protein (LEA_3a subfamily)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015087)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G19550
fragaria_vesca FvH4_2g04480
malus_domestica MD05G1096000.v1.1 MD10G1102200.v1.1
prunus_persica Prupe.8G140400_v2.0.a1
pyrus_communis pycom05g09470
rosa_chinensis RchiOBHm_Chr6g0253971
rosa_laevigata RLG00000014952
rosa_multiflora Rmu_sc0001716.1_g000012
rosa_roxburghii Rroxscaffold_7G00211360
rosa_rugosa Rorug05G0548700
rosa_samantha Rh6AG065000 Rh6BG058100 Rh6CG058100 Rh6DG055000
rosa_wichuraiana Rw6G005730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 223
AccI GTMKAC 1 cut(s) 333
AccII CGCG 1 cut(s) 71
AciI CCGC 1 cut(s) 24
AcoI YGGCCR 1 cut(s) 9
AcyI GRCGYC 1 cut(s) 88
AfaI GTAC 1 cut(s) 342
AfiI CCNNNNNNNGG 1 cut(s) 239
AflII CTTAAG 1 cut(s) 305
AloI GAACNNNNNNTCC 2 cut(s) 234, 266
AluBI AGCT 4 cut(s) 62, 106, 116, 296
AluI AGCT 4 cut(s) 62, 106, 116, 296
Alw26I GTCTC 1 cut(s) 176
AoxI GGCC 1 cut(s) 9
ApeKI GCWGC 3 cut(s) 99, 116, 296
AspLEI GCGC 1 cut(s) 73
AsuC2I CCSGG 1 cut(s) 359
AxyI CCTNAGG 1 cut(s) 288
BalI TGGCCA 1 cut(s) 11
BanI GGYRCC 1 cut(s) 223
BbvCI CCTCAGC 1 cut(s) 107
BbvI GCAGC 3 cut(s) 103, 111, 283
BccI CCATC 1 cut(s) 166
BciVI GTATCC 2 cut(s) 154, 355
BcnI CCSGG 1 cut(s) 359
BcoDI GTCTC 1 cut(s) 176
BfmI CTRYAG 1 cut(s) 117
BfrI CTTAAG 1 cut(s) 305
BfuI GTATCC 2 cut(s) 154, 355
BisI GCNGC 3 cut(s) 100, 117, 297
BlpI GCTNAGC 1 cut(s) 63
BlsI GCNGC 3 cut(s) 101, 118, 298
BmcAI AGTACT 1 cut(s) 342
Bme1390I CCNGG 1 cut(s) 359
BmiI GGNNCC 1 cut(s) 225
BmrFI CCNGG 1 cut(s) 359
BmrI ACTGGG 1 cut(s) 229
BmuI ACTGGG 1 cut(s) 229
Bpu10I CCTNAGC 4 cut(s) 53, 107, 323, 372
Bpu1102I GCTNAGC 1 cut(s) 63
BpuEI CTTGAG 1 cut(s) 365
BpuMI CCSGG 1 cut(s) 359
BsaHI GRCGYC 1 cut(s) 88
Bsc4I CCNNNNNNNGG 1 cut(s) 239
Bse1I ACTGG 2 cut(s) 190, 224
Bse21I CCTNAGG 1 cut(s) 288
BseGI GGATG 2 cut(s) 229, 283
BseLI CCNNNNNNNGG 1 cut(s) 239
BseMII CTCAG 3 cut(s) 98, 337, 363
BseNI ACTGG 2 cut(s) 190, 224
BseRI GAGGAG 1 cut(s) 357
BseXI GCAGC 3 cut(s) 103, 111, 283
Bsh1236I CGCG 1 cut(s) 71
BshFI GGCC 1 cut(s) 11
BshNI GGYRCC 1 cut(s) 223
BsiSI CCGG 1 cut(s) 359
BslI CCNNNNNNNGG 1 cut(s) 239
BsmAI GTCTC 1 cut(s) 176
BsnI GGCC 1 cut(s) 11
Bsp143I GATC 1 cut(s) 79
Bsp1720I GCTNAGC 1 cut(s) 63
BspACI CCGC 1 cut(s) 24
BspANI GGCC 1 cut(s) 11
BspCNI CTCAG 3 cut(s) 99, 336, 364
BspFNI CGCG 1 cut(s) 71
BspLI GGNNCC 1 cut(s) 225
BspMAI CTGCAG 1 cut(s) 121
BspT107I GGYRCC 1 cut(s) 223
BspTI CTTAAG 1 cut(s) 305
BsrI ACTGG 2 cut(s) 190, 224
BssMI GATC 1 cut(s) 79
BssNI GRCGYC 1 cut(s) 88
BstACI GRCGYC 1 cut(s) 88
BstAFI CTTAAG 1 cut(s) 305
BstC8I GCNNGC 2 cut(s) 69, 104
BstDEI CTNAG 6 cut(s) 53, 63, 107, 288, 323, 372
BstF5I GGATG 2 cut(s) 229, 283
BstFNI CGCG 1 cut(s) 71
BstHHI GCGC 1 cut(s) 73
BstKTI GATC 1 cut(s) 82
BstMAI GTCTC 1 cut(s) 176
BstMBI GATC 1 cut(s) 79
BstMWI GCNNNNNNNGC 2 cut(s) 68, 96
BstNSI RCATGY 1 cut(s) 394
BstSCI CCNGG 1 cut(s) 357
BstSFI CTRYAG 1 cut(s) 117
BstUI CGCG 1 cut(s) 71
BstV1I GCAGC 3 cut(s) 103, 111, 283
Bsu36I CCTNAGG 1 cut(s) 288
BsuI GTATCC 2 cut(s) 154, 355
BsuRI GGCC 1 cut(s) 11
BtsCI GGATG 2 cut(s) 229, 283
Cac8I GCNNGC 2 cut(s) 69, 104
CfoI GCGC 1 cut(s) 73
CseI GACGC 1 cut(s) 96
Csp6I GTAC 1 cut(s) 341
CviAII CATG 6 cut(s) 13, 169, 207, 263, 274, 391
CviJI RGCY 6 cut(s) 11, 62, 106, 116, 296, 322
CviKI_1 RGCY 6 cut(s) 11, 62, 106, 116, 296, 322
CviQI GTAC 1 cut(s) 341
DdeI CTNAG 6 cut(s) 53, 63, 107, 288, 323, 372
DpnI GATC 1 cut(s) 81
DpnII GATC 1 cut(s) 79
EaeI YGGCCR 1 cut(s) 9
Eco81I CCTNAGG 1 cut(s) 288
EcoT22I ATGCAT 1 cut(s) 396
FaeI CATG 6 cut(s) 16, 172, 210, 266, 277, 394
FatI CATG 6 cut(s) 12, 168, 206, 262, 273, 390
FauI CCCGC 1 cut(s) 17
FblI GTMKAC 1 cut(s) 333
Fnu4HI GCNGC 3 cut(s) 100, 117, 297
FokI GGATG 2 cut(s) 216, 290
Fsp4HI GCNGC 3 cut(s) 100, 117, 297
GlaI GCGC 1 cut(s) 72
GluI GCNGC 3 cut(s) 100, 117, 297
HaeIII GGCC 1 cut(s) 11
HapII CCGG 1 cut(s) 359
HgaI GACGC 1 cut(s) 96
HhaI GCGC 1 cut(s) 73
Hin1I GRCGYC 1 cut(s) 88
Hin1II CATG 6 cut(s) 16, 172, 210, 266, 277, 394
Hin6I GCGC 1 cut(s) 71
HinP1I GCGC 1 cut(s) 71
HincII GTYRAC 1 cut(s) 334
HindII GTYRAC 1 cut(s) 334
HpaII CCGG 1 cut(s) 359
Hpy166II GTNNAC 1 cut(s) 334
Hpy188I TCNGA 1 cut(s) 255
Hpy188III TCNNGA 2 cut(s) 325, 371
Hpy8I GTNNAC 1 cut(s) 334
Hpy99I CGWCG 3 cut(s) 90, 335, 338
HpyCH4IV ACGT 2 cut(s) 249, 330
HpyCH4V TGCA 3 cut(s) 119, 216, 394
HpyF10VI GCNNNNNNNGC 2 cut(s) 68, 96
HpyF3I CTNAG 6 cut(s) 53, 63, 107, 288, 323, 372
HpySE526I ACGT 2 cut(s) 249, 330
Hsp92I GRCGYC 1 cut(s) 88
Hsp92II CATG 6 cut(s) 16, 172, 210, 266, 277, 394
HspAI GCGC 1 cut(s) 71
Kzo9I GATC 1 cut(s) 79
LmnI GCTCC 2 cut(s) 113, 293
LpnPI CCDG 7 cut(s) 171, 205, 225, 304, 310, 372, 384
Lsp1109I GCAGC 3 cut(s) 103, 111, 283
MaeII ACGT 2 cut(s) 249, 330
MalI GATC 1 cut(s) 81
MboI GATC 1 cut(s) 79
MboII GAAGA 1 cut(s) 195
MlsI TGGCCA 1 cut(s) 11
MluNI TGGCCA 1 cut(s) 11
MnlI CCTC 5 cut(s) 14, 102, 151, 204, 378
Mox20I TGGCCA 1 cut(s) 11
Mph1103I ATGCAT 1 cut(s) 396
MscI TGGCCA 1 cut(s) 11
MseI TTAA 2 cut(s) 144, 306
MslI CAYNNNNRTG 2 cut(s) 205, 211
Msp20I TGGCCA 1 cut(s) 11
MspCI CTTAAG 1 cut(s) 305
MspI CCGG 1 cut(s) 359
MspR9I CCNGG 1 cut(s) 359
MvnI CGCG 1 cut(s) 71
MwoI GCNNNNNNNGC 2 cut(s) 68, 96
NciI CCSGG 1 cut(s) 359
NdeII GATC 1 cut(s) 79
NlaIII CATG 6 cut(s) 16, 172, 210, 266, 277, 394
NlaIV GGNNCC 1 cut(s) 225
NsiI ATGCAT 1 cut(s) 396
NspI RCATGY 1 cut(s) 394
PkrI GCNGC 3 cut(s) 101, 118, 298
PspN4I GGNNCC 1 cut(s) 225
PstI CTGCAG 1 cut(s) 121
RsaI GTAC 1 cut(s) 342
RsaNI GTAC 1 cut(s) 341
RseI CAYNNNNRTG 2 cut(s) 205, 211
SalI GTCGAC 1 cut(s) 332
SaqAI TTAA 2 cut(s) 144, 306
SatI GCNGC 3 cut(s) 100, 117, 297
Sau3AI GATC 1 cut(s) 79
ScaI AGTACT 1 cut(s) 342
ScrFI CCNGG 1 cut(s) 359
SetI ASST 8 cut(s) 64, 108, 118, 215, 252, 273, 298, 333
SfcI CTRYAG 1 cut(s) 117
SgrDI CGTCGACG 1 cut(s) 332
SmiMI CAYNNNNRTG 2 cut(s) 205, 211
SmlI CTYRAG 2 cut(s) 305, 344
SmoI CTYRAG 2 cut(s) 305, 344
SsiI CCGC 1 cut(s) 24
StyD4I CCNGG 1 cut(s) 357
TaiI ACGT 2 cut(s) 252, 333
TaqI TCGA 2 cut(s) 85, 333
TatI WGTACW 1 cut(s) 340
Tru1I TTAA 2 cut(s) 144, 306
Tru9I TTAA 2 cut(s) 144, 306
TseI GCWGC 3 cut(s) 99, 116, 296
TspDTI ATGAA 3 cut(s) 189, 195, 279
TspGWI ACGGA 1 cut(s) 351
Vha464I CTTAAG 1 cut(s) 305
XceI RCATGY 1 cut(s) 394
XmiI GTMKAC 1 cut(s) 333
ZrmI AGTACT 1 cut(s) 342
Zsp2I ATGCAT 1 cut(s) 396
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.